Gchil1719.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1719.t1
Unique NameGchil1719.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length271
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1975778..1976590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5518.FGSG_07961P0
PFAMsRsa3
Max annot lvl4751|Fungi
KEGG koko:K14854
Evalue0.000691
EggNOG OGs2CINY@1|root,2SBU9@2759|Eukaryota,3ACFM@33154|Opisthokonta,3P8X8@4751|Fungi,3QZ78@4890|Ascomycota,21BXV@147550|Sordariomycetes,3TJDJ@5125|Hypocreales,1FVCV@110618|Nectriaceae
DescriptionRibosome-assembly protein 3
COG categoryS
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1719Gchil1719Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1975778..1976590 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1719.t1.stop1Gchil1719.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1975778..1975780 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1719.t1.CDS1Gchil1719.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1975778..1976590 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1719.t1.exon1Gchil1719.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1975778..1976590 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1719.t1.start1Gchil1719.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1976588..1976590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1719.t1Gchil1719.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1975778..1976590 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1719.t1 ID=Gchil1719.t1|Name=Gchil1719.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=271bp
MTPEETPSGKREPSTEKKGRSGKRADTGRKKKRIKASRADVPRAKKEKRS
HASPPETSPLDFDFRTEEPHARDAIFHGAASLKLPSGNNMRSMSQEDQHK
CIEGVTESCEKLIQILDESVSVFSKNEDGLGVEEQLMSDMARLRNIPIAR
RYVEMTLWRRIKLFSRQRLAVAEELGYGSGKKKKSDGFLIHSSDDVDPTF
VSYRNAYLKTVIERYQEDLDQIRERESLDAEQVHFLLQCLQSGADLFSNL
KCIEDKELKKKRIKPHGKGN*
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spliced messenger RNA

>Gchil1719.t1 ID=Gchil1719.t1|Name=Gchil1719.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=813bp|location=Sequence derived from alignment at tig00004403_pilon:1975778..1976590- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCCTGAAGAGACTCCGAGCGGGAAACGGGAACCGAGCACTGAAAA
GAAGGGTCGGTCGGGAAAAAGGGCGGATACTGGAAGGAAAAAAAAAAGAA
TCAAAGCGTCCAGAGCTGATGTTCCAAGAGCAAAGAAAGAAAAACGGAGT
CATGCTTCCCCTCCTGAAACTAGTCCATTGGATTTTGACTTTCGCACAGA
AGAGCCCCATGCGAGGGATGCTATATTTCACGGAGCAGCATCTTTGAAAC
TGCCTTCTGGAAACAACATGCGAAGCATGTCACAAGAGGATCAGCACAAG
TGCATCGAAGGCGTCACAGAAAGTTGTGAGAAACTGATTCAAATTTTAGA
CGAGTCGGTTTCGGTCTTCTCGAAGAATGAAGATGGACTGGGCGTAGAAG
AACAACTAATGTCAGATATGGCACGACTTCGGAACATCCCAATCGCGCGA
AGGTATGTCGAAATGACGCTCTGGAGGAGAATTAAGCTTTTCAGTCGCCA
AAGACTTGCGGTTGCCGAAGAGTTGGGCTATGGCAGTGGAAAGAAGAAAA
AGAGCGATGGATTTCTTATTCACTCTTCTGATGATGTTGACCCGACCTTT
GTTTCCTATCGTAACGCCTACCTGAAGACTGTAATCGAACGATACCAGGA
AGATCTGGATCAAATCAGGGAACGCGAAAGCCTTGACGCCGAGCAAGTGC
ATTTCTTGTTACAATGTTTGCAATCCGGTGCGGACCTTTTTTCAAACTTA
AAATGTATTGAAGACAAAGAATTGAAAAAGAAGCGAATCAAGCCGCATGG
GAAAGGAAATTAA
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protein sequence of Gchil1719.t1

>Gchil1719.t1 ID=Gchil1719.t1|Name=Gchil1719.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=271bp
MTPEETPSGKREPSTEKKGRSGKRADTGRKKKRIKASRADVPRAKKEKRS
HASPPETSPLDFDFRTEEPHARDAIFHGAASLKLPSGNNMRSMSQEDQHK
CIEGVTESCEKLIQILDESVSVFSKNEDGLGVEEQLMSDMARLRNIPIAR
RYVEMTLWRRIKLFSRQRLAVAEELGYGSGKKKKSDGFLIHSSDDVDPTF
VSYRNAYLKTVIERYQEDLDQIRERESLDAEQVHFLLQCLQSGADLFSNL
KCIEDKELKKKRIKPHGKGN*
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mRNA from alignment at tig00004403_pilon:1975778..1976590-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1719.t1 ID=Gchil1719.t1|Name=Gchil1719.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=813bp|location=Sequence derived from alignment at tig00004403_pilon:1975778..1976590- (Gracilaria chilensis NLEC103_M9 male)
ATGACGCCTGAAGAGACTCCGAGCGGGAAACGGGAACCGAGCACTGAAAA
GAAGGGTCGGTCGGGAAAAAGGGCGGATACTGGAAGGAAAAAAAAAAGAA
TCAAAGCGTCCAGAGCTGATGTTCCAAGAGCAAAGAAAGAAAAACGGAGT
CATGCTTCCCCTCCTGAAACTAGTCCATTGGATTTTGACTTTCGCACAGA
AGAGCCCCATGCGAGGGATGCTATATTTCACGGAGCAGCATCTTTGAAAC
TGCCTTCTGGAAACAACATGCGAAGCATGTCACAAGAGGATCAGCACAAG
TGCATCGAAGGCGTCACAGAAAGTTGTGAGAAACTGATTCAAATTTTAGA
CGAGTCGGTTTCGGTCTTCTCGAAGAATGAAGATGGACTGGGCGTAGAAG
AACAACTAATGTCAGATATGGCACGACTTCGGAACATCCCAATCGCGCGA
AGGTATGTCGAAATGACGCTCTGGAGGAGAATTAAGCTTTTCAGTCGCCA
AAGACTTGCGGTTGCCGAAGAGTTGGGCTATGGCAGTGGAAAGAAGAAAA
AGAGCGATGGATTTCTTATTCACTCTTCTGATGATGTTGACCCGACCTTT
GTTTCCTATCGTAACGCCTACCTGAAGACTGTAATCGAACGATACCAGGA
AGATCTGGATCAAATCAGGGAACGCGAAAGCCTTGACGCCGAGCAAGTGC
ATTTCTTGTTACAATGTTTGCAATCCGGTGCGGACCTTTTTTCAAACTTA
AAATGTATTGAAGACAAAGAATTGAAAAAGAAGCGAATCAAGCCGCATGG
GAAAGGAAATTAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1975778..1976590-

>Gchil1719.t1 ID=Gchil1719.t1|Name=Gchil1719.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=813bp|location=Sequence derived from alignment at tig00004403_pilon:1975778..1976590- (Gracilaria chilensis NLEC103_M9 male)
ATGACGCCTGAAGAGACTCCGAGCGGGAAACGGGAACCGAGCACTGAAAA
GAAGGGTCGGTCGGGAAAAAGGGCGGATACTGGAAGGAAAAAAAAAAGAA
TCAAAGCGTCCAGAGCTGATGTTCCAAGAGCAAAGAAAGAAAAACGGAGT
CATGCTTCCCCTCCTGAAACTAGTCCATTGGATTTTGACTTTCGCACAGA
AGAGCCCCATGCGAGGGATGCTATATTTCACGGAGCAGCATCTTTGAAAC
TGCCTTCTGGAAACAACATGCGAAGCATGTCACAAGAGGATCAGCACAAG
TGCATCGAAGGCGTCACAGAAAGTTGTGAGAAACTGATTCAAATTTTAGA
CGAGTCGGTTTCGGTCTTCTCGAAGAATGAAGATGGACTGGGCGTAGAAG
AACAACTAATGTCAGATATGGCACGACTTCGGAACATCCCAATCGCGCGA
AGGTATGTCGAAATGACGCTCTGGAGGAGAATTAAGCTTTTCAGTCGCCA
AAGACTTGCGGTTGCCGAAGAGTTGGGCTATGGCAGTGGAAAGAAGAAAA
AGAGCGATGGATTTCTTATTCACTCTTCTGATGATGTTGACCCGACCTTT
GTTTCCTATCGTAACGCCTACCTGAAGACTGTAATCGAACGATACCAGGA
AGATCTGGATCAAATCAGGGAACGCGAAAGCCTTGACGCCGAGCAAGTGC
ATTTCTTGTTACAATGTTTGCAATCCGGTGCGGACCTTTTTTCAAACTTA
AAATGTATTGAAGACAAAGAATTGAAAAAGAAGCGAATCAAGCCGCATGG
GAAAGGAAATTAA
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