Gchil1546.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1546.t1
Unique Name	Gchil1546.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	634

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:834735..836636 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4113.PGSC0003DMT400017657
PFAMs	Dor1
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K20295
Evalue	2.72e-86
EggNOG OGs	KOG2069@1\|root,KOG2069@2759\|Eukaryota,37SHY@33090\|Viridiplantae,3GFRB@35493\|Streptophyta,44BCX@71274\|asterids
Description	Conserved oligomeric Golgi complex
COG category	U
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1546	Gchil1546	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 834735..836636 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1546.t1.start1	Gchil1546.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 834735..834737 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1546.t1.CDS1	Gchil1546.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 834735..836636 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1546.t1.exon1	Gchil1546.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 834735..836636 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1546.t1.stop1	Gchil1546.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 836634..836636 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1546.t1	Gchil1546.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 834735..836636 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:834735..836636+
coding sequence from alignment at tig00004403_pilon:834735..836636+

mRNA sequence

>Gchil1546.t1 ID=Gchil1546.t1|Name=Gchil1546.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=634bp
MTAEVPGVQEEPPDTSATSGPLDPDADAEEALKAICKFILNDLPADAPSC
DKWHGLHAYIEELCGYNIERLSREPHDLSSACVRLKNELEDVACGNYRAL
IESFECAGAVRGGVADVRSRLDDLINSLPKLADATRKFSASVTEKQRGRE
NLLRAITEHRAVADIVEMPRLMTTLVGAELYDEALELRECAVKLYAMHND
EILIRHVCEEMDVLTQQLVLQLLVLLRNSIQLPMCLRIVGFLRRLDVFSE
YRLRMLFLHCRGEWMRNGIETSTANTRQAELVSLSDNMRSMMFEIITQYR
AVFNDDIDDEYAGLEKESSSRSERSYSHSSSILFDWTSSSVTEYLNKLRS
GIKEVKDGAALNTILQQAMYCGQSLGRVGADFRAALPPMFESSVMQIYCS
HLNAALRQFEMMIEDNRWAPVGSSALRKERGQLGGGTQNNRESQAGIEIS
PSDDYEPPLAVLDSPPLAVFLNGILAAVNDLRLCAPLSLAPQLGKVLRET
LISSGEFMTAIGGPGGAFLKRSDRPHYASMAVSLRDLCVPYVAKCLEHCM
NSTGLISIEDVQSVLNSMFGDTLPTEPVYENNDDRPNEDPSRNDQTVHPT
GDGNNDEYLAEENGHVANHEDADKPETEENLIL*

spliced messenger RNA

>Gchil1546.t1 ID=Gchil1546.t1|Name=Gchil1546.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1902bp|location=Sequence derived from alignment at tig00004403_pilon:834735..836636+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGCTGAAGTCCCGGGGGTACAAGAGGAGCCTCCTGATACTAGTGC
TACGTCTGGACCTCTGGATCCTGATGCAGATGCTGAAGAGGCTCTGAAAG
CAATTTGCAAGTTTATCCTGAATGACTTGCCGGCAGACGCTCCTTCCTGT
GATAAATGGCATGGACTTCACGCCTACATTGAAGAGCTCTGTGGATATAA
CATTGAAAGATTATCGCGTGAGCCGCACGATCTCAGCTCTGCATGCGTTC
GTTTGAAGAACGAGTTGGAGGATGTTGCATGTGGGAATTACCGGGCACTT
ATTGAAAGCTTTGAATGTGCAGGAGCAGTCCGTGGTGGTGTTGCAGATGT
GCGGTCCAGACTAGATGATCTAATCAATTCTTTGCCAAAGTTGGCTGATG
CCACTCGCAAGTTTTCCGCGAGCGTTACGGAAAAACAACGCGGGAGGGAG
AACCTTTTGCGCGCCATCACTGAACATCGGGCAGTAGCGGACATAGTGGA
AATGCCAAGACTCATGACAACGCTAGTGGGTGCTGAACTGTACGACGAGG
CGTTAGAATTGCGAGAATGTGCGGTGAAACTTTACGCCATGCACAACGAT
GAAATTCTTATTCGTCACGTCTGTGAAGAAATGGATGTCCTCACACAACA
ACTGGTACTTCAACTACTCGTGCTATTGCGAAATTCAATACAGTTGCCTA
TGTGTTTGCGAATAGTCGGCTTTCTACGTCGCCTCGACGTATTCTCAGAA
TACCGCTTGCGAATGTTGTTTTTGCATTGTCGAGGCGAATGGATGAGAAA
TGGAATAGAAACTTCAACGGCAAACACAAGACAGGCGGAGTTGGTTAGTC
TCAGTGACAATATGAGATCTATGATGTTCGAAATCATCACGCAGTATCGT
GCGGTCTTCAATGACGATATCGATGACGAATATGCAGGGCTTGAAAAAGA
GTCATCCAGTCGATCTGAAAGATCCTACTCACACTCATCATCCATTCTGT
TCGATTGGACATCTTCGTCCGTAACGGAGTACTTAAATAAGCTTAGAAGT
GGTATAAAGGAGGTGAAAGATGGTGCTGCGCTGAACACAATTCTTCAACA
AGCTATGTATTGTGGTCAATCATTGGGTCGAGTTGGAGCTGACTTCCGGG
CGGCACTTCCGCCAATGTTCGAGAGCTCTGTGATGCAAATTTACTGCTCT
CATCTGAACGCTGCTCTCCGCCAATTCGAGATGATGATAGAAGACAATCG
TTGGGCTCCTGTGGGATCATCAGCTCTGCGAAAGGAAAGAGGACAACTCG
GAGGCGGAACGCAGAATAACAGAGAATCCCAAGCCGGAATCGAAATTTCA
CCAAGCGATGATTATGAGCCCCCTCTTGCAGTTCTTGACAGCCCGCCCCT
TGCAGTTTTCCTGAACGGTATTCTTGCTGCCGTCAACGATTTGCGATTGT
GCGCTCCGTTATCGCTCGCACCGCAACTTGGAAAAGTCCTGCGAGAAACT
TTGATTAGTTCTGGGGAATTCATGACGGCTATCGGTGGCCCTGGTGGTGC
ATTCTTGAAAAGATCGGATAGGCCTCACTACGCATCTATGGCCGTTTCTT
TACGCGATTTATGTGTACCGTATGTTGCGAAGTGCTTGGAGCATTGTATG
AACTCAACCGGGTTGATAAGTATCGAAGATGTTCAAAGTGTTTTAAACTC
AATGTTTGGAGACACGCTACCCACTGAGCCGGTATATGAAAATAATGATG
ATCGTCCGAATGAGGACCCAAGTCGCAACGATCAAACTGTTCATCCAACT
GGAGATGGAAATAACGATGAATACCTAGCCGAAGAAAATGGCCATGTTGC
TAACCATGAAGACGCGGACAAGCCGGAGACGGAAGAGAATCTGATTTTGT
GA

protein sequence of Gchil1546.t1

>Gchil1546.t1 ID=Gchil1546.t1|Name=Gchil1546.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=634bp
MTAEVPGVQEEPPDTSATSGPLDPDADAEEALKAICKFILNDLPADAPSC
DKWHGLHAYIEELCGYNIERLSREPHDLSSACVRLKNELEDVACGNYRAL
IESFECAGAVRGGVADVRSRLDDLINSLPKLADATRKFSASVTEKQRGRE
NLLRAITEHRAVADIVEMPRLMTTLVGAELYDEALELRECAVKLYAMHND
EILIRHVCEEMDVLTQQLVLQLLVLLRNSIQLPMCLRIVGFLRRLDVFSE
YRLRMLFLHCRGEWMRNGIETSTANTRQAELVSLSDNMRSMMFEIITQYR
AVFNDDIDDEYAGLEKESSSRSERSYSHSSSILFDWTSSSVTEYLNKLRS
GIKEVKDGAALNTILQQAMYCGQSLGRVGADFRAALPPMFESSVMQIYCS
HLNAALRQFEMMIEDNRWAPVGSSALRKERGQLGGGTQNNRESQAGIEIS
PSDDYEPPLAVLDSPPLAVFLNGILAAVNDLRLCAPLSLAPQLGKVLRET
LISSGEFMTAIGGPGGAFLKRSDRPHYASMAVSLRDLCVPYVAKCLEHCM
NSTGLISIEDVQSVLNSMFGDTLPTEPVYENNDDRPNEDPSRNDQTVHPT
GDGNNDEYLAEENGHVANHEDADKPETEENLIL*

mRNA from alignment at tig00004403_pilon:834735..836636+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1546.t1 ID=Gchil1546.t1|Name=Gchil1546.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1902bp|location=Sequence derived from alignment at tig00004403_pilon:834735..836636+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAGCTGAAGTCCCGGGGGTACAAGAGGAGCCTCCTGATACTAGTGC
TACGTCTGGACCTCTGGATCCTGATGCAGATGCTGAAGAGGCTCTGAAAG
CAATTTGCAAGTTTATCCTGAATGACTTGCCGGCAGACGCTCCTTCCTGT
GATAAATGGCATGGACTTCACGCCTACATTGAAGAGCTCTGTGGATATAA
CATTGAAAGATTATCGCGTGAGCCGCACGATCTCAGCTCTGCATGCGTTC
GTTTGAAGAACGAGTTGGAGGATGTTGCATGTGGGAATTACCGGGCACTT
ATTGAAAGCTTTGAATGTGCAGGAGCAGTCCGTGGTGGTGTTGCAGATGT
GCGGTCCAGACTAGATGATCTAATCAATTCTTTGCCAAAGTTGGCTGATG
CCACTCGCAAGTTTTCCGCGAGCGTTACGGAAAAACAACGCGGGAGGGAG
AACCTTTTGCGCGCCATCACTGAACATCGGGCAGTAGCGGACATAGTGGA
AATGCCAAGACTCATGACAACGCTAGTGGGTGCTGAACTGTACGACGAGG
CGTTAGAATTGCGAGAATGTGCGGTGAAACTTTACGCCATGCACAACGAT
GAAATTCTTATTCGTCACGTCTGTGAAGAAATGGATGTCCTCACACAACA
ACTGGTACTTCAACTACTCGTGCTATTGCGAAATTCAATACAGTTGCCTA
TGTGTTTGCGAATAGTCGGCTTTCTACGTCGCCTCGACGTATTCTCAGAA
TACCGCTTGCGAATGTTGTTTTTGCATTGTCGAGGCGAATGGATGAGAAA
TGGAATAGAAACTTCAACGGCAAACACAAGACAGGCGGAGTTGGTTAGTC
TCAGTGACAATATGAGATCTATGATGTTCGAAATCATCACGCAGTATCGT
GCGGTCTTCAATGACGATATCGATGACGAATATGCAGGGCTTGAAAAAGA
GTCATCCAGTCGATCTGAAAGATCCTACTCACACTCATCATCCATTCTGT
TCGATTGGACATCTTCGTCCGTAACGGAGTACTTAAATAAGCTTAGAAGT
GGTATAAAGGAGGTGAAAGATGGTGCTGCGCTGAACACAATTCTTCAACA
AGCTATGTATTGTGGTCAATCATTGGGTCGAGTTGGAGCTGACTTCCGGG
CGGCACTTCCGCCAATGTTCGAGAGCTCTGTGATGCAAATTTACTGCTCT
CATCTGAACGCTGCTCTCCGCCAATTCGAGATGATGATAGAAGACAATCG
TTGGGCTCCTGTGGGATCATCAGCTCTGCGAAAGGAAAGAGGACAACTCG
GAGGCGGAACGCAGAATAACAGAGAATCCCAAGCCGGAATCGAAATTTCA
CCAAGCGATGATTATGAGCCCCCTCTTGCAGTTCTTGACAGCCCGCCCCT
TGCAGTTTTCCTGAACGGTATTCTTGCTGCCGTCAACGATTTGCGATTGT
GCGCTCCGTTATCGCTCGCACCGCAACTTGGAAAAGTCCTGCGAGAAACT
TTGATTAGTTCTGGGGAATTCATGACGGCTATCGGTGGCCCTGGTGGTGC
ATTCTTGAAAAGATCGGATAGGCCTCACTACGCATCTATGGCCGTTTCTT
TACGCGATTTATGTGTACCGTATGTTGCGAAGTGCTTGGAGCATTGTATG
AACTCAACCGGGTTGATAAGTATCGAAGATGTTCAAAGTGTTTTAAACTC
AATGTTTGGAGACACGCTACCCACTGAGCCGGTATATGAAAATAATGATG
ATCGTCCGAATGAGGACCCAAGTCGCAACGATCAAACTGTTCATCCAACT
GGAGATGGAAATAACGATGAATACCTAGCCGAAGAAAATGGCCATGTTGC
TAACCATGAAGACGCGGACAAGCCGGAGACGGAAGAGAATCTGATTTTGT
GA

Coding sequence (CDS) from alignment at tig00004403_pilon:834735..836636+

>Gchil1546.t1 ID=Gchil1546.t1|Name=Gchil1546.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1902bp|location=Sequence derived from alignment at tig00004403_pilon:834735..836636+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAGCTGAAGTCCCGGGGGTACAAGAGGAGCCTCCTGATACTAGTGC
TACGTCTGGACCTCTGGATCCTGATGCAGATGCTGAAGAGGCTCTGAAAG
CAATTTGCAAGTTTATCCTGAATGACTTGCCGGCAGACGCTCCTTCCTGT
GATAAATGGCATGGACTTCACGCCTACATTGAAGAGCTCTGTGGATATAA
CATTGAAAGATTATCGCGTGAGCCGCACGATCTCAGCTCTGCATGCGTTC
GTTTGAAGAACGAGTTGGAGGATGTTGCATGTGGGAATTACCGGGCACTT
ATTGAAAGCTTTGAATGTGCAGGAGCAGTCCGTGGTGGTGTTGCAGATGT
GCGGTCCAGACTAGATGATCTAATCAATTCTTTGCCAAAGTTGGCTGATG
CCACTCGCAAGTTTTCCGCGAGCGTTACGGAAAAACAACGCGGGAGGGAG
AACCTTTTGCGCGCCATCACTGAACATCGGGCAGTAGCGGACATAGTGGA
AATGCCAAGACTCATGACAACGCTAGTGGGTGCTGAACTGTACGACGAGG
CGTTAGAATTGCGAGAATGTGCGGTGAAACTTTACGCCATGCACAACGAT
GAAATTCTTATTCGTCACGTCTGTGAAGAAATGGATGTCCTCACACAACA
ACTGGTACTTCAACTACTCGTGCTATTGCGAAATTCAATACAGTTGCCTA
TGTGTTTGCGAATAGTCGGCTTTCTACGTCGCCTCGACGTATTCTCAGAA
TACCGCTTGCGAATGTTGTTTTTGCATTGTCGAGGCGAATGGATGAGAAA
TGGAATAGAAACTTCAACGGCAAACACAAGACAGGCGGAGTTGGTTAGTC
TCAGTGACAATATGAGATCTATGATGTTCGAAATCATCACGCAGTATCGT
GCGGTCTTCAATGACGATATCGATGACGAATATGCAGGGCTTGAAAAAGA
GTCATCCAGTCGATCTGAAAGATCCTACTCACACTCATCATCCATTCTGT
TCGATTGGACATCTTCGTCCGTAACGGAGTACTTAAATAAGCTTAGAAGT
GGTATAAAGGAGGTGAAAGATGGTGCTGCGCTGAACACAATTCTTCAACA
AGCTATGTATTGTGGTCAATCATTGGGTCGAGTTGGAGCTGACTTCCGGG
CGGCACTTCCGCCAATGTTCGAGAGCTCTGTGATGCAAATTTACTGCTCT
CATCTGAACGCTGCTCTCCGCCAATTCGAGATGATGATAGAAGACAATCG
TTGGGCTCCTGTGGGATCATCAGCTCTGCGAAAGGAAAGAGGACAACTCG
GAGGCGGAACGCAGAATAACAGAGAATCCCAAGCCGGAATCGAAATTTCA
CCAAGCGATGATTATGAGCCCCCTCTTGCAGTTCTTGACAGCCCGCCCCT
TGCAGTTTTCCTGAACGGTATTCTTGCTGCCGTCAACGATTTGCGATTGT
GCGCTCCGTTATCGCTCGCACCGCAACTTGGAAAAGTCCTGCGAGAAACT
TTGATTAGTTCTGGGGAATTCATGACGGCTATCGGTGGCCCTGGTGGTGC
ATTCTTGAAAAGATCGGATAGGCCTCACTACGCATCTATGGCCGTTTCTT
TACGCGATTTATGTGTACCGTATGTTGCGAAGTGCTTGGAGCATTGTATG
AACTCAACCGGGTTGATAAGTATCGAAGATGTTCAAAGTGTTTTAAACTC
AATGTTTGGAGACACGCTACCCACTGAGCCGGTATATGAAAATAATGATG
ATCGTCCGAATGAGGACCCAAGTCGCAACGATCAAACTGTTCATCCAACT
GGAGATGGAAATAACGATGAATACCTAGCCGAAGAAAATGGCCATGTTGC
TAACCATGAAGACGCGGACAAGCCGGAGACGGAAGAGAATCTGATTTTGT
GA