Gchil1732.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1732.t1
Unique NameGchil1732.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length429
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2006257..2007543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr50516
PFAMsNa_H_Exchanger
Max annot lvl2836|Bacillariophyta
Evalue4.12e-43
EggNOG OGsCOG0475@1|root,KOG1650@2759|Eukaryota,2XB5T@2836|Bacillariophyta
DescriptionSodium/hydrogen exchanger family
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1732Gchil1732Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2006257..2007543 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1732.t1.stop1Gchil1732.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2006257..2006259 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1732.t1.CDS1Gchil1732.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2006257..2007543 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1732.t1.exon1Gchil1732.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2006257..2007543 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1732.t1.start1Gchil1732.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2007541..2007543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1732.t1Gchil1732.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2006257..2007543 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1732.t1 ID=Gchil1732.t1|Name=Gchil1732.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=429bp
MKDVTSTTESELDLVRLGLFLASTYAGGELASFVGTSPVAMYIAIGAILG
PPLANFVPIPRGLELAGLLGILLSVVDAGLGTRREDLRKSLARGLLVAVL
GVLFPIAGAVLIICVVDVIEGRFAVLNTLKTAFAVGSAIAPTSLGVTARL
LSEIGELETKIGQLISVAAVIDDVISLVLLSQVLAVAVPTPSVWSLLRPV
VFSLVFLIGAATFAKYLPSLLPNVWVKVGFPERYYPHTGLWLLVLLVIAI
TYLAYIARTSFLLGGYLIGIAFAQVPPFIARDPWKCSASPYVEWLSLLFF
SCTVGFVIPLKELFSKSVFGLGALLSISSFFGKLMCGLGLLPNRIDGIAV
AVAMQGRGEFGFLIASQARTSELLSQRMYAATIWGVLVPTIFAPIIFRPV
FRWRNKRLDNSATTDRGEHHDLSTETSP*
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spliced messenger RNA

>Gchil1732.t1 ID=Gchil1732.t1|Name=Gchil1732.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1287bp|location=Sequence derived from alignment at tig00004403_pilon:2006257..2007543- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGATGTTACGTCCACAACGGAAAGTGAATTGGATCTCGTCCGCCT
CGGCTTATTTCTTGCCAGCACGTACGCTGGAGGTGAATTGGCTTCTTTCG
TTGGTACCTCGCCTGTGGCAATGTACATTGCCATCGGTGCGATTCTTGGT
CCACCACTTGCAAACTTTGTTCCAATTCCGAGAGGTCTAGAGCTCGCAGG
TTTGCTTGGAATACTCCTAAGTGTTGTAGACGCCGGCCTTGGCACAAGAC
GGGAAGACCTGAGAAAAAGCCTAGCAAGAGGTTTACTAGTGGCAGTTTTG
GGGGTTTTGTTTCCAATAGCTGGCGCTGTACTCATAATTTGCGTCGTTGA
TGTGATTGAAGGCAGATTTGCCGTGTTGAATACTTTGAAGACAGCTTTTG
CGGTGGGCTCCGCGATTGCTCCCACTTCGCTTGGAGTGACTGCAAGACTG
CTCTCCGAAATAGGAGAGCTGGAGACAAAAATAGGTCAGCTCATCTCTGT
GGCAGCAGTGATAGACGATGTGATAAGCCTTGTTCTTTTGTCCCAGGTTC
TTGCTGTTGCTGTCCCAACCCCCAGCGTTTGGAGTCTTCTACGACCCGTA
GTCTTCTCTCTAGTCTTTTTAATAGGAGCAGCGACCTTTGCCAAGTACTT
ACCATCTCTTTTACCAAATGTGTGGGTAAAAGTTGGCTTTCCTGAAAGGT
ACTACCCACACACGGGCCTATGGCTTCTCGTACTGTTAGTGATAGCAATC
ACTTATCTGGCATATATAGCGAGAACGAGCTTTCTTTTAGGGGGTTATTT
AATCGGCATTGCATTTGCTCAAGTTCCACCTTTTATCGCCAGAGATCCTT
GGAAATGTTCAGCATCTCCATACGTCGAATGGTTATCTCTTCTCTTTTTT
TCATGTACGGTTGGATTTGTTATTCCTTTGAAAGAACTGTTTTCAAAAAG
CGTTTTTGGACTCGGGGCTCTGTTGTCAATATCGAGCTTTTTCGGGAAGT
TGATGTGCGGTTTAGGTTTGCTTCCGAATCGAATTGATGGAATCGCGGTC
GCGGTTGCCATGCAGGGAAGAGGGGAATTCGGCTTCCTGATTGCGTCCCA
AGCACGAACATCTGAGCTCCTGTCTCAGCGAATGTACGCCGCAACTATTT
GGGGTGTTCTTGTTCCAACAATTTTCGCACCAATCATATTCAGGCCTGTG
TTTCGATGGAGAAACAAAAGGCTGGACAATTCTGCGACAACTGACCGCGG
TGAACACCATGATCTCTCAACAGAAACGTCTCCCTGA
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protein sequence of Gchil1732.t1

>Gchil1732.t1 ID=Gchil1732.t1|Name=Gchil1732.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=429bp
MKDVTSTTESELDLVRLGLFLASTYAGGELASFVGTSPVAMYIAIGAILG
PPLANFVPIPRGLELAGLLGILLSVVDAGLGTRREDLRKSLARGLLVAVL
GVLFPIAGAVLIICVVDVIEGRFAVLNTLKTAFAVGSAIAPTSLGVTARL
LSEIGELETKIGQLISVAAVIDDVISLVLLSQVLAVAVPTPSVWSLLRPV
VFSLVFLIGAATFAKYLPSLLPNVWVKVGFPERYYPHTGLWLLVLLVIAI
TYLAYIARTSFLLGGYLIGIAFAQVPPFIARDPWKCSASPYVEWLSLLFF
SCTVGFVIPLKELFSKSVFGLGALLSISSFFGKLMCGLGLLPNRIDGIAV
AVAMQGRGEFGFLIASQARTSELLSQRMYAATIWGVLVPTIFAPIIFRPV
FRWRNKRLDNSATTDRGEHHDLSTETSP*
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mRNA from alignment at tig00004403_pilon:2006257..2007543-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1732.t1 ID=Gchil1732.t1|Name=Gchil1732.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1287bp|location=Sequence derived from alignment at tig00004403_pilon:2006257..2007543- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGGATGTTACGTCCACAACGGAAAGTGAATTGGATCTCGTCCGCCT
CGGCTTATTTCTTGCCAGCACGTACGCTGGAGGTGAATTGGCTTCTTTCG
TTGGTACCTCGCCTGTGGCAATGTACATTGCCATCGGTGCGATTCTTGGT
CCACCACTTGCAAACTTTGTTCCAATTCCGAGAGGTCTAGAGCTCGCAGG
TTTGCTTGGAATACTCCTAAGTGTTGTAGACGCCGGCCTTGGCACAAGAC
GGGAAGACCTGAGAAAAAGCCTAGCAAGAGGTTTACTAGTGGCAGTTTTG
GGGGTTTTGTTTCCAATAGCTGGCGCTGTACTCATAATTTGCGTCGTTGA
TGTGATTGAAGGCAGATTTGCCGTGTTGAATACTTTGAAGACAGCTTTTG
CGGTGGGCTCCGCGATTGCTCCCACTTCGCTTGGAGTGACTGCAAGACTG
CTCTCCGAAATAGGAGAGCTGGAGACAAAAATAGGTCAGCTCATCTCTGT
GGCAGCAGTGATAGACGATGTGATAAGCCTTGTTCTTTTGTCCCAGGTTC
TTGCTGTTGCTGTCCCAACCCCCAGCGTTTGGAGTCTTCTACGACCCGTA
GTCTTCTCTCTAGTCTTTTTAATAGGAGCAGCGACCTTTGCCAAGTACTT
ACCATCTCTTTTACCAAATGTGTGGGTAAAAGTTGGCTTTCCTGAAAGGT
ACTACCCACACACGGGCCTATGGCTTCTCGTACTGTTAGTGATAGCAATC
ACTTATCTGGCATATATAGCGAGAACGAGCTTTCTTTTAGGGGGTTATTT
AATCGGCATTGCATTTGCTCAAGTTCCACCTTTTATCGCCAGAGATCCTT
GGAAATGTTCAGCATCTCCATACGTCGAATGGTTATCTCTTCTCTTTTTT
TCATGTACGGTTGGATTTGTTATTCCTTTGAAAGAACTGTTTTCAAAAAG
CGTTTTTGGACTCGGGGCTCTGTTGTCAATATCGAGCTTTTTCGGGAAGT
TGATGTGCGGTTTAGGTTTGCTTCCGAATCGAATTGATGGAATCGCGGTC
GCGGTTGCCATGCAGGGAAGAGGGGAATTCGGCTTCCTGATTGCGTCCCA
AGCACGAACATCTGAGCTCCTGTCTCAGCGAATGTACGCCGCAACTATTT
GGGGTGTTCTTGTTCCAACAATTTTCGCACCAATCATATTCAGGCCTGTG
TTTCGATGGAGAAACAAAAGGCTGGACAATTCTGCGACAACTGACCGCGG
TGAACACCATGATCTCTCAACAGAAACGTCTCCCTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:2006257..2007543-

>Gchil1732.t1 ID=Gchil1732.t1|Name=Gchil1732.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1287bp|location=Sequence derived from alignment at tig00004403_pilon:2006257..2007543- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGGATGTTACGTCCACAACGGAAAGTGAATTGGATCTCGTCCGCCT
CGGCTTATTTCTTGCCAGCACGTACGCTGGAGGTGAATTGGCTTCTTTCG
TTGGTACCTCGCCTGTGGCAATGTACATTGCCATCGGTGCGATTCTTGGT
CCACCACTTGCAAACTTTGTTCCAATTCCGAGAGGTCTAGAGCTCGCAGG
TTTGCTTGGAATACTCCTAAGTGTTGTAGACGCCGGCCTTGGCACAAGAC
GGGAAGACCTGAGAAAAAGCCTAGCAAGAGGTTTACTAGTGGCAGTTTTG
GGGGTTTTGTTTCCAATAGCTGGCGCTGTACTCATAATTTGCGTCGTTGA
TGTGATTGAAGGCAGATTTGCCGTGTTGAATACTTTGAAGACAGCTTTTG
CGGTGGGCTCCGCGATTGCTCCCACTTCGCTTGGAGTGACTGCAAGACTG
CTCTCCGAAATAGGAGAGCTGGAGACAAAAATAGGTCAGCTCATCTCTGT
GGCAGCAGTGATAGACGATGTGATAAGCCTTGTTCTTTTGTCCCAGGTTC
TTGCTGTTGCTGTCCCAACCCCCAGCGTTTGGAGTCTTCTACGACCCGTA
GTCTTCTCTCTAGTCTTTTTAATAGGAGCAGCGACCTTTGCCAAGTACTT
ACCATCTCTTTTACCAAATGTGTGGGTAAAAGTTGGCTTTCCTGAAAGGT
ACTACCCACACACGGGCCTATGGCTTCTCGTACTGTTAGTGATAGCAATC
ACTTATCTGGCATATATAGCGAGAACGAGCTTTCTTTTAGGGGGTTATTT
AATCGGCATTGCATTTGCTCAAGTTCCACCTTTTATCGCCAGAGATCCTT
GGAAATGTTCAGCATCTCCATACGTCGAATGGTTATCTCTTCTCTTTTTT
TCATGTACGGTTGGATTTGTTATTCCTTTGAAAGAACTGTTTTCAAAAAG
CGTTTTTGGACTCGGGGCTCTGTTGTCAATATCGAGCTTTTTCGGGAAGT
TGATGTGCGGTTTAGGTTTGCTTCCGAATCGAATTGATGGAATCGCGGTC
GCGGTTGCCATGCAGGGAAGAGGGGAATTCGGCTTCCTGATTGCGTCCCA
AGCACGAACATCTGAGCTCCTGTCTCAGCGAATGTACGCCGCAACTATTT
GGGGTGTTCTTGTTCCAACAATTTTCGCACCAATCATATTCAGGCCTGTG
TTTCGATGGAGAAACAAAAGGCTGGACAATTCTGCGACAACTGACCGCGG
TGAACACCATGATCTCTCAACAGAAACGTCTCCCTGA
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