Gchil1558.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1558.t1
Unique NameGchil1558.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length138
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:887612..888025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1558Gchil1558Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 887612..888025 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1558.t1.start1Gchil1558.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 887612..887614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1558.t1.CDS1Gchil1558.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 887612..888025 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1558.t1.exon1Gchil1558.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 887612..888025 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1558.t1.stop1Gchil1558.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 888023..888025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1558.t1Gchil1558.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 887612..888025 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1558.t1 ID=Gchil1558.t1|Name=Gchil1558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=138bp
MPLGLSLEARRSVVAARVLTLTPHGQSLNNALDLVLYGVVNSAVNGIQVM
DPYGRRVRIFIDPVAFFGDYSAVYATADVLGYTVGAFRTLCEVKRRKCCT
EPEIMYSTEIQTRRDWDMFSPKRGCAPYGSLKRIVEV*
back to top

spliced messenger RNA

>Gchil1558.t1 ID=Gchil1558.t1|Name=Gchil1558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=414bp|location=Sequence derived from alignment at tig00004403_pilon:887612..888025+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgccgcttggtctgtcgttggaggccagaagatctgttgtggccgcccg
cgttcttacgcttacaccgcacggacaatccctcaacaacgccttggatc
tcgtattgtatggcgtggtgaacagcgctgtgaatggaatacaagtaatg
gacccgtacggacgtcgcgttagaattttcatagatcccgtggcattctt
cggggactactccgctgtttatgcaactgctgatgtgctgggttacacgg
tgggcgcctttcgcacgttgtgcgaggtgaaaagaaggaaatgttgcacc
gaaccggagataatgtattccaccgagattcaaacgaggagagactggga
tatgttctctccgaagagaggatgcgcgccatacgggagtctcaagcgga
tagtggaagtatga
back to top

protein sequence of Gchil1558.t1

>Gchil1558.t1 ID=Gchil1558.t1|Name=Gchil1558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=138bp
MPLGLSLEARRSVVAARVLTLTPHGQSLNNALDLVLYGVVNSAVNGIQVM
DPYGRRVRIFIDPVAFFGDYSAVYATADVLGYTVGAFRTLCEVKRRKCCT
EPEIMYSTEIQTRRDWDMFSPKRGCAPYGSLKRIVEV*
back to top

mRNA from alignment at tig00004403_pilon:887612..888025+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1558.t1 ID=Gchil1558.t1|Name=Gchil1558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=414bp|location=Sequence derived from alignment at tig00004403_pilon:887612..888025+ (Gracilaria chilensis NLEC103_M9 male)
atgccgcttggtctgtcgttggaggccagaagatctgttgtggccgcccg
cgttcttacgcttacaccgcacggacaatccctcaacaacgccttggatc
tcgtattgtatggcgtggtgaacagcgctgtgaatggaatacaagtaatg
gacccgtacggacgtcgcgttagaattttcatagatcccgtggcattctt
cggggactactccgctgtttatgcaactgctgatgtgctgggttacacgg
tgggcgcctttcgcacgttgtgcgaggtgaaaagaaggaaatgttgcacc
gaaccggagataatgtattccaccgagattcaaacgaggagagactggga
tatgttctctccgaagagaggatgcgcgccatacgggagtctcaagcgga
tagtggaagtatga
back to top

Coding sequence (CDS) from alignment at tig00004403_pilon:887612..888025+

>Gchil1558.t1 ID=Gchil1558.t1|Name=Gchil1558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=414bp|location=Sequence derived from alignment at tig00004403_pilon:887612..888025+ (Gracilaria chilensis NLEC103_M9 male)
atgccgcttggtctgtcgttggaggccagaagatctgttgtggccgcccg
cgttcttacgcttacaccgcacggacaatccctcaacaacgccttggatc
tcgtattgtatggcgtggtgaacagcgctgtgaatggaatacaagtaatg
gacccgtacggacgtcgcgttagaattttcatagatcccgtggcattctt
cggggactactccgctgtttatgcaactgctgatgtgctgggttacacgg
tgggcgcctttcgcacgttgtgcgaggtgaaaagaaggaaatgttgcacc
gaaccggagataatgtattccaccgagattcaaacgaggagagactggga
tatgttctctccgaagagaggatgcgcgccatacgggagtctcaagcgga
tagtggaagtatga
back to top