Gchil1502.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1502.t1
Unique Name	Gchil1502.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	690

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:415748..417961 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7668.SPU_001414-tr
PFAMs	RVT_1,SCAN,gag-asp_proteas,rve,zf-CCHC,zf-H2C2
Max annot lvl	33208\|Metazoa
Evalue	2.11e-102
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38F42@33154\|Opisthokonta,3BA5H@33208\|Metazoa,3CWAK@33213\|Bilateria
Description	K02A2.6-like
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1502	Gchil1502	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 415748..417961 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1502.t1	Gchil1502.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 415748..417961 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1502.t1.start1	Gchil1502.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 415748..415750 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1502.t1.CDS1	Gchil1502.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 415748..415918 +
Gchil1502.t1.CDS2	Gchil1502.t1.CDS2	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 416063..417961 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1502.t1.exon1	Gchil1502.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 415748..415918 +
Gchil1502.t1.exon2	Gchil1502.t1.exon2	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 416063..417961 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1502.t1.intron1	Gchil1502.t1.intron1	Gracilaria chilensis NLEC103_M9 male	intron	tig00004403_pilon 415919..416062 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1502.t1.stop1	Gchil1502.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 417959..417961 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:415748..417961+
coding sequence from alignment at tig00004403_pilon:415748..417961+

mRNA sequence

>Gchil1502.t1 ID=Gchil1502.t1|Name=Gchil1502.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=690bp
MSESHVLVTSRAAGLIFIQGHHPSAHKEELTLLAGGVMRIRPDVAFYVQV
ANYSDRPPTGQEPTPDAENVWIAKVQLSPEFESERERVIELLKPFRDMWN
GHLGRIASAKHRIQLKPGTKPIYQMPYSAGPARRELERKEVTKKLKLGVI
EPFSAEWASPFVFAQKKDGSLRFCVDYRRLNEITVRDTYPLPRMDECIDS
LGEAKIFSTLDANSGYWQTKVDEADRDKTTLTSQMELYRYVRMPFGLKNA
PTTLQRALNIILSRVKWQYALVYLDDVISYSRTVSEHFDHVRTILSLLRS
AGITLHLDKCQFFSGTVDYLGLVIRPDKLQVSTRTQDAIRAAKPRTNQTE
LRSFFGLCNVFRCFVESFARIAAALNRKLEKNQPFYFEALTDPEHEAFEE
LRQRFIRPPILAIQRQDMPYVLDTDACDKKVGCVLLQKQPNGGLLPIGYW
SRSLNKAERSYSTTERECLAVVWAILHLRPYLEGARFTLLTDHHALRWIL
NLADASRRLARWRLRLMEYDFDIVHRPGIKHQAADALSRILTDGKDTTPL
DEEVPCLLLADRAEENDDLVADITVDGEVKTETVLDWHDGQNPIGCLEVM
AIVEEETNVRPVTLEELIRAQAEDEYCKSVWKDVGNGITLFDINRYRVLV
RRSPLEGALQKAVPRSLVPRVLCLSHYPRLEGHPGGTRM*

spliced messenger RNA

>Gchil1502.t1 ID=Gchil1502.t1|Name=Gchil1502.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2070bp|location=Sequence derived from alignment at tig00004403_pilon:415748..417961+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgtcggaatcccatgtactggtaacatcccgggccgctggcctcatttt
tatccaaggacatcacccctcggctcataaagaggaattaaccctcttgg
ctggcggggtaatgagaatccgaccggacgtggccttctacgttcaggtg
gctaactattccgaccgcccgcccaccggacaggagccaacgcctgatgc
agagaacgtctggatcgcaaaggtccagttgtctcccgaattcgagtccg
aacgggaaagggttatcgagctcctcaaaccgtttcgggacatgtggaac
ggccatctaggccgtatcgcgtcagcaaagcacaggatccaattgaaacc
tggtacgaagccgatctaccagatgccatacagtgcgggtccggcgcgtc
gcgaactggaacgtaaggaggtcaccaagaagttgaagcttggcgtaatt
gagcctttctcggccgaatgggcgagcccgttcgtgtttgctcagaagaa
agacgggagtctacgcttctgtgtggactaccgccgactaaacgagatca
ccgttcgggatacttacccactaccgagaatggacgaatgcatcgattct
cttggagaagcgaaaatattctccaccttggacgcaaacagcgggtattg
gcagaccaaagtggatgaagccgaccgggataaaacgacgttgacgtccc
aaatggaactgtacaggtatgttcgaatgccgttcggtttgaagaacgcc
cccaccacattgcaacgggccttgaacatcatactgtcccgcgtcaagtg
gcaatatgccttggtctatcttgatgacgttatcagctactcccgcacgg
tttcggagcatttcgaccatgttcggaccattctttcattactccgatcg
gccggtatcactctccatttggataagtgccaattcttcagcggtactgt
cgattatctgggtctcgttatccgtccggacaagctgcaggtctccacaa
ggacccaggacgctatccgagcggccaaacctcgcactaaccaaaccgaa
ctccgttcgttcttcggactgtgcaacgttttccgatgttttgttgaaag
ctttgcccgaattgcggccgcgctgaaccgcaagctcgaaaaaaaccaac
cgttctacttcgaggccctgaccgatccggaacacgaggcctttgaggaa
ctccgccaacggtttatacgacccccaattctggctatccagcgtcaaga
tatgccgtacgtcctggacaccgacgcctgcgacaagaaagtcggttgtg
tcttactacaaaagcaacctaacggtggtttacttccgatcggatactgg
agccgctcgctgaataaagccgagcggtcatattccacaaccgaacggga
atgcctcgctgtcgtgtgggcaatactgcatctccgaccgtatctcgagg
gagcccgctttactctccttacggaccaccacgctttgaggtggatactc
aacctggcggacgcatctcgacggctagctcgttggcgacttcgtctcat
ggagtatgacttcgacatagtccaccggccgggcataaaacaccaggccg
ctgacgcgctgtcgcgaatcctgacggacggaaaagacaccactcccctg
gacgaggaggtcccatgcctacttcttgcagaccgcgcggaagagaacga
cgacctcgtcgcggacatcaccgttgacggtgaggtcaagacagaaactg
tccttgactggcacgatggtcagaacccgatcggctgcctcgaggtcatg
gccatcgtggaggaggagacaaacgtccgaccggtcactttggaagagct
catccgagcgcaggcggaggacgagtactgcaaatccgtgtggaaggacg
tgggtaacgggattaccctcttcgacatcaaccgttacagagttctcgtc
cgtcgctccccgctggaaggagccctacagaaggcggtaccccgctcgct
agttccgcgcgtcctctgtctttcgcattacccgcgtttggaaggacacc
cgggcgggactcgaatgtaa

protein sequence of Gchil1502.t1

>Gchil1502.t1 ID=Gchil1502.t1|Name=Gchil1502.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=690bp
MSESHVLVTSRAAGLIFIQGHHPSAHKEELTLLAGGVMRIRPDVAFYVQV
ANYSDRPPTGQEPTPDAENVWIAKVQLSPEFESERERVIELLKPFRDMWN
GHLGRIASAKHRIQLKPGTKPIYQMPYSAGPARRELERKEVTKKLKLGVI
EPFSAEWASPFVFAQKKDGSLRFCVDYRRLNEITVRDTYPLPRMDECIDS
LGEAKIFSTLDANSGYWQTKVDEADRDKTTLTSQMELYRYVRMPFGLKNA
PTTLQRALNIILSRVKWQYALVYLDDVISYSRTVSEHFDHVRTILSLLRS
AGITLHLDKCQFFSGTVDYLGLVIRPDKLQVSTRTQDAIRAAKPRTNQTE
LRSFFGLCNVFRCFVESFARIAAALNRKLEKNQPFYFEALTDPEHEAFEE
LRQRFIRPPILAIQRQDMPYVLDTDACDKKVGCVLLQKQPNGGLLPIGYW
SRSLNKAERSYSTTERECLAVVWAILHLRPYLEGARFTLLTDHHALRWIL
NLADASRRLARWRLRLMEYDFDIVHRPGIKHQAADALSRILTDGKDTTPL
DEEVPCLLLADRAEENDDLVADITVDGEVKTETVLDWHDGQNPIGCLEVM
AIVEEETNVRPVTLEELIRAQAEDEYCKSVWKDVGNGITLFDINRYRVLV
RRSPLEGALQKAVPRSLVPRVLCLSHYPRLEGHPGGTRM*

mRNA from alignment at tig00004403_pilon:415748..417961+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1502.t1 ID=Gchil1502.t1|Name=Gchil1502.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2214bp|location=Sequence derived from alignment at tig00004403_pilon:415748..417961+ (Gracilaria chilensis NLEC103_M9 male)
atgtcggaatcccatgtactggtaacatcccgggccgctggcctcatttt
tatccaaggacatcacccctcggctcataaagaggaattaaccctcttgg
ctggcggggtaatgagaatccgaccggacgtggccttctacgttcaggtg
gctaactattccgaccgcccggtacgccttcacaaaggcaaaatcatcgg
cctggctttaccttcccccgtcgcattaataacacccgactttccgtctc
ggagcgacgaaactgaagaggggggccccaatgacgcatctctttccgtt
taagatgtgtcgaagcccaccggacaggagccaacgcctgatgcagagaa
cgtctggatcgcaaaggtccagttgtctcccgaattcgagtccgaacggg
aaagggttatcgagctcctcaaaccgtttcgggacatgtggaacggccat
ctaggccgtatcgcgtcagcaaagcacaggatccaattgaaacctggtac
gaagccgatctaccagatgccatacagtgcgggtccggcgcgtcgcgaac
tggaacgtaaggaggtcaccaagaagttgaagcttggcgtaattgagcct
ttctcggccgaatgggcgagcccgttcgtgtttgctcagaagaaagacgg
gagtctacgcttctgtgtggactaccgccgactaaacgagatcaccgttc
gggatacttacccactaccgagaatggacgaatgcatcgattctcttgga
gaagcgaaaatattctccaccttggacgcaaacagcgggtattggcagac
caaagtggatgaagccgaccgggataaaacgacgttgacgtcccaaatgg
aactgtacaggtatgttcgaatgccgttcggtttgaagaacgcccccacc
acattgcaacgggccttgaacatcatactgtcccgcgtcaagtggcaata
tgccttggtctatcttgatgacgttatcagctactcccgcacggtttcgg
agcatttcgaccatgttcggaccattctttcattactccgatcggccggt
atcactctccatttggataagtgccaattcttcagcggtactgtcgatta
tctgggtctcgttatccgtccggacaagctgcaggtctccacaaggaccc
aggacgctatccgagcggccaaacctcgcactaaccaaaccgaactccgt
tcgttcttcggactgtgcaacgttttccgatgttttgttgaaagctttgc
ccgaattgcggccgcgctgaaccgcaagctcgaaaaaaaccaaccgttct
acttcgaggccctgaccgatccggaacacgaggcctttgaggaactccgc
caacggtttatacgacccccaattctggctatccagcgtcaagatatgcc
gtacgtcctggacaccgacgcctgcgacaagaaagtcggttgtgtcttac
tacaaaagcaacctaacggtggtttacttccgatcggatactggagccgc
tcgctgaataaagccgagcggtcatattccacaaccgaacgggaatgcct
cgctgtcgtgtgggcaatactgcatctccgaccgtatctcgagggagccc
gctttactctccttacggaccaccacgctttgaggtggatactcaacctg
gcggacgcatctcgacggctagctcgttggcgacttcgtctcatggagta
tgacttcgacatagtccaccggccgggcataaaacaccaggccgctgacg
cgctgtcgcgaatcctgacggacggaaaagacaccactcccctggacgag
gaggtcccatgcctacttcttgcagaccgcgcggaagagaacgacgacct
cgtcgcggacatcaccgttgacggtgaggtcaagacagaaactgtccttg
actggcacgatggtcagaacccgatcggctgcctcgaggtcatggccatc
gtggaggaggagacaaacgtccgaccggtcactttggaagagctcatccg
agcgcaggcggaggacgagtactgcaaatccgtgtggaaggacgtgggta
acgggattaccctcttcgacatcaaccgttacagagttctcgtccgtcgc
tccccgctggaaggagccctacagaaggcggtaccccgctcgctagttcc
gcgcgtcctctgtctttcgcattacccgcgtttggaaggacacccgggcg
ggactcgaatgtaa

Coding sequence (CDS) from alignment at tig00004403_pilon:415748..417961+

>Gchil1502.t1 ID=Gchil1502.t1|Name=Gchil1502.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2070bp|location=Sequence derived from alignment at tig00004403_pilon:415748..417961+ (Gracilaria chilensis NLEC103_M9 male)
atgtcggaatcccatgtactggtaacatcccgggccgctggcctcatttt
tatccaaggacatcacccctcggctcataaagaggaattaaccctcttgg
ctggcggggtaatgagaatccgaccggacgtggccttctacgttcaggtg
gctaactattccgaccgcccgcccaccggacaggagccaacgcctgatgc
agagaacgtctggatcgcaaaggtccagttgtctcccgaattcgagtccg
aacgggaaagggttatcgagctcctcaaaccgtttcgggacatgtggaac
ggccatctaggccgtatcgcgtcagcaaagcacaggatccaattgaaacc
tggtacgaagccgatctaccagatgccatacagtgcgggtccggcgcgtc
gcgaactggaacgtaaggaggtcaccaagaagttgaagcttggcgtaatt
gagcctttctcggccgaatgggcgagcccgttcgtgtttgctcagaagaa
agacgggagtctacgcttctgtgtggactaccgccgactaaacgagatca
ccgttcgggatacttacccactaccgagaatggacgaatgcatcgattct
cttggagaagcgaaaatattctccaccttggacgcaaacagcgggtattg
gcagaccaaagtggatgaagccgaccgggataaaacgacgttgacgtccc
aaatggaactgtacaggtatgttcgaatgccgttcggtttgaagaacgcc
cccaccacattgcaacgggccttgaacatcatactgtcccgcgtcaagtg
gcaatatgccttggtctatcttgatgacgttatcagctactcccgcacgg
tttcggagcatttcgaccatgttcggaccattctttcattactccgatcg
gccggtatcactctccatttggataagtgccaattcttcagcggtactgt
cgattatctgggtctcgttatccgtccggacaagctgcaggtctccacaa
ggacccaggacgctatccgagcggccaaacctcgcactaaccaaaccgaa
ctccgttcgttcttcggactgtgcaacgttttccgatgttttgttgaaag
ctttgcccgaattgcggccgcgctgaaccgcaagctcgaaaaaaaccaac
cgttctacttcgaggccctgaccgatccggaacacgaggcctttgaggaa
ctccgccaacggtttatacgacccccaattctggctatccagcgtcaaga
tatgccgtacgtcctggacaccgacgcctgcgacaagaaagtcggttgtg
tcttactacaaaagcaacctaacggtggtttacttccgatcggatactgg
agccgctcgctgaataaagccgagcggtcatattccacaaccgaacggga
atgcctcgctgtcgtgtgggcaatactgcatctccgaccgtatctcgagg
gagcccgctttactctccttacggaccaccacgctttgaggtggatactc
aacctggcggacgcatctcgacggctagctcgttggcgacttcgtctcat
ggagtatgacttcgacatagtccaccggccgggcataaaacaccaggccg
ctgacgcgctgtcgcgaatcctgacggacggaaaagacaccactcccctg
gacgaggaggtcccatgcctacttcttgcagaccgcgcggaagagaacga
cgacctcgtcgcggacatcaccgttgacggtgaggtcaagacagaaactg
tccttgactggcacgatggtcagaacccgatcggctgcctcgaggtcatg
gccatcgtggaggaggagacaaacgtccgaccggtcactttggaagagct
catccgagcgcaggcggaggacgagtactgcaaatccgtgtggaaggacg
tgggtaacgggattaccctcttcgacatcaaccgttacagagttctcgtc
cgtcgctccccgctggaaggagccctacagaaggcggtaccccgctcgct
agttccgcgcgtcctctgtctttcgcattacccgcgtttggaaggacacc
cgggcgggactcgaatgtaa