Gchil1827.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1827.t1
Unique NameGchil1827.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2722627..2723704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog164328.Phyra81578
PFAMs4HBT,ABC2_membrane,ABC_tran
Max annot lvl4776|Peronosporales
Evalue1.16e-20
EggNOG OGsCOG1131@1|root,KOG0061@2759|Eukaryota,3QEHD@4776|Peronosporales
DescriptionABC-2 type transporter
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1827Gchil1827Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2722627..2723704 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1827.t1Gchil1827.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2722627..2723704 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1827.t1.stop1Gchil1827.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2722627..2722629 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1827.t1.CDS1Gchil1827.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2722627..2723317 -
Gchil1827.t1.CDS2Gchil1827.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2723403..2723704 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1827.t1.exon1Gchil1827.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2722627..2723317 -
Gchil1827.t1.exon2Gchil1827.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2723403..2723704 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1827.t1.intron1Gchil1827.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 2723318..2723402 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1827.t1.start1Gchil1827.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2723702..2723704 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1827.t1 ID=Gchil1827.t1|Name=Gchil1827.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=331bp
MITDLVDVIGDPSRYGQPSTSAPLMSLLDIACGRCSALYSGGSVVTGCFD
EITLYAPLRHGEVVAVVCEVVSTGKSSMFLRILASTYEPPGSNKLPQVVA
RGFATFVAIEPKTKSPRPLPGIVRKTIPDERSVESHIKLLVCEPELEPSL
STSFAAHRKQLRESSTPVKQLQLVEALQSLSFSRVMDVGQTEINIRKHFL
PRNENHGGMVFGGDILETFESAALSCASRMQKTPMRTVAVRSISFLAAVQ
NLSLLHVIAKVIACTRKTVVVLIRSFIDQESNRFSLQPSHYGVFYLRTQD
SAELEVGVQAWETDHDVDLHRVLSLPGGCD*
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spliced messenger RNA

>Gchil1827.t1 ID=Gchil1827.t1|Name=Gchil1827.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00004403_pilon:2722627..2723704- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTACGGATCTCGTCGACGTTATTGGCGACCCCTCCAGGTATGGCCA
ACCCTCGACTTCAGCTCCTCTCATGTCTTTGTTGGATATTGCCTGTGGTA
GGTGTTCAGCCCTCTATTCGGGCGGTTCTGTTGTCACCGGCTGCTTCGAT
GAAATTACGTTGTACGCTCCTCTCAGGCACGGTGAAGTTGTTGCCGTCGT
TTGTGAGGTGGTCTCCACCGGCAAATCTAGTATGTTTCTTCGCATTCTGG
CCAGCACGTATGAACCACCTGGCTCAAACAAACTACCACAAGTTGTAGCT
AGAGGCTTTGCAACCTTTGTAGCAATTGAACCAAAAACAAAAAGCCCTCG
GCCTCTGCCGGGCATAGTCAGAAAAACTATCCCCGACGAACGATCAGTCG
AATCACACATAAAACTTCTGGTGTGCGAACCAGAACTTGAACCCAGTCTG
TCCACTTCATTCGCAGCACATAGAAAACAACTTCGTGAAAGCTCAACACC
AGTGAAGCAGCTTCAGCTCGTTGAAGCTCTCCAGTCTCTTTCATTCAGCC
GTGTCATGGACGTGGGCCAAACAGAAATCAATATCCGAAAACATTTTCTT
CCCCGCAATGAGAACCACGGGGGAATGGTTTTCGGTGGAGATATTCTCGA
AACGTTCGAGAGCGCTGCGTTAAGTTGCGCTTCCCGGATGCAAAAGACAC
CCATGCGAACAGTAGCAGTACGGAGCATATCCTTTCTCGCTGCTGTGCAA
AATCTTTCGTTGTTACACGTCATTGCAAAGGTCATTGCTTGCACTCGCAA
AACTGTTGTTGTACTCATTCGGTCTTTTATTGATCAAGAAAGCAACCGAT
TCAGTTTACAGCCAAGCCATTACGGTGTGTTTTACTTAAGGACTCAAGAC
TCTGCGGAACTGGAAGTAGGCGTTCAAGCGTGGGAAACCGATCACGATGT
CGATCTTCACCGCGTTCTTTCACTCCCTGGCGGTTGTGATTGA
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protein sequence of Gchil1827.t1

>Gchil1827.t1 ID=Gchil1827.t1|Name=Gchil1827.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=331bp
MITDLVDVIGDPSRYGQPSTSAPLMSLLDIACGRCSALYSGGSVVTGCFD
EITLYAPLRHGEVVAVVCEVVSTGKSSMFLRILASTYEPPGSNKLPQVVA
RGFATFVAIEPKTKSPRPLPGIVRKTIPDERSVESHIKLLVCEPELEPSL
STSFAAHRKQLRESSTPVKQLQLVEALQSLSFSRVMDVGQTEINIRKHFL
PRNENHGGMVFGGDILETFESAALSCASRMQKTPMRTVAVRSISFLAAVQ
NLSLLHVIAKVIACTRKTVVVLIRSFIDQESNRFSLQPSHYGVFYLRTQD
SAELEVGVQAWETDHDVDLHRVLSLPGGCD*
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mRNA from alignment at tig00004403_pilon:2722627..2723704-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1827.t1 ID=Gchil1827.t1|Name=Gchil1827.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1078bp|location=Sequence derived from alignment at tig00004403_pilon:2722627..2723704- (Gracilaria chilensis NLEC103_M9 male)
ATGATTACGGATCTCGTCGACGTTATTGGCGACCCCTCCAGGTATGGCCA
ACCCTCGACTTCAGCTCCTCTCATGTCTTTGTTGGATATTGCCTGTGGTA
GGTGTTCAGCCCTCTATTCGGGCGGTTCTGTTGTCACCGGCTGCTTCGAT
GAAATTACGTTGTACGCTCCTCTCAGGCACGGTGAAGTTGTTGCCGTCGT
TTGTGAGGTGGTCTCCACCGGCAAATCTAGTATGTTTCTTCGCATTCTGG
CCAGCACGTATGAACCACCTGGCTCAAACAAACTACCACAAGTTGTAGCT
AGGTAAGTTGTCGAAGCATACATCAACCAGCGTTAGGTTCTTCTTATACT
GACCTTGGTTTGCATTTCTTGTCTGACTCTCTTCCAGAGGCTTTGCAACC
TTTGTAGCAATTGAACCAAAAACAAAAAGCCCTCGGCCTCTGCCGGGCAT
AGTCAGAAAAACTATCCCCGACGAACGATCAGTCGAATCACACATAAAAC
TTCTGGTGTGCGAACCAGAACTTGAACCCAGTCTGTCCACTTCATTCGCA
GCACATAGAAAACAACTTCGTGAAAGCTCAACACCAGTGAAGCAGCTTCA
GCTCGTTGAAGCTCTCCAGTCTCTTTCATTCAGCCGTGTCATGGACGTGG
GCCAAACAGAAATCAATATCCGAAAACATTTTCTTCCCCGCAATGAGAAC
CACGGGGGAATGGTTTTCGGTGGAGATATTCTCGAAACGTTCGAGAGCGC
TGCGTTAAGTTGCGCTTCCCGGATGCAAAAGACACCCATGCGAACAGTAG
CAGTACGGAGCATATCCTTTCTCGCTGCTGTGCAAAATCTTTCGTTGTTA
CACGTCATTGCAAAGGTCATTGCTTGCACTCGCAAAACTGTTGTTGTACT
CATTCGGTCTTTTATTGATCAAGAAAGCAACCGATTCAGTTTACAGCCAA
GCCATTACGGTGTGTTTTACTTAAGGACTCAAGACTCTGCGGAACTGGAA
GTAGGCGTTCAAGCGTGGGAAACCGATCACGATGTCGATCTTCACCGCGT
TCTTTCACTCCCTGGCGGTTGTGATTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:2722627..2723704-

>Gchil1827.t1 ID=Gchil1827.t1|Name=Gchil1827.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=993bp|location=Sequence derived from alignment at tig00004403_pilon:2722627..2723704- (Gracilaria chilensis NLEC103_M9 male)
ATGATTACGGATCTCGTCGACGTTATTGGCGACCCCTCCAGGTATGGCCA
ACCCTCGACTTCAGCTCCTCTCATGTCTTTGTTGGATATTGCCTGTGGTA
GGTGTTCAGCCCTCTATTCGGGCGGTTCTGTTGTCACCGGCTGCTTCGAT
GAAATTACGTTGTACGCTCCTCTCAGGCACGGTGAAGTTGTTGCCGTCGT
TTGTGAGGTGGTCTCCACCGGCAAATCTAGTATGTTTCTTCGCATTCTGG
CCAGCACGTATGAACCACCTGGCTCAAACAAACTACCACAAGTTGTAGCT
AGAGGCTTTGCAACCTTTGTAGCAATTGAACCAAAAACAAAAAGCCCTCG
GCCTCTGCCGGGCATAGTCAGAAAAACTATCCCCGACGAACGATCAGTCG
AATCACACATAAAACTTCTGGTGTGCGAACCAGAACTTGAACCCAGTCTG
TCCACTTCATTCGCAGCACATAGAAAACAACTTCGTGAAAGCTCAACACC
AGTGAAGCAGCTTCAGCTCGTTGAAGCTCTCCAGTCTCTTTCATTCAGCC
GTGTCATGGACGTGGGCCAAACAGAAATCAATATCCGAAAACATTTTCTT
CCCCGCAATGAGAACCACGGGGGAATGGTTTTCGGTGGAGATATTCTCGA
AACGTTCGAGAGCGCTGCGTTAAGTTGCGCTTCCCGGATGCAAAAGACAC
CCATGCGAACAGTAGCAGTACGGAGCATATCCTTTCTCGCTGCTGTGCAA
AATCTTTCGTTGTTACACGTCATTGCAAAGGTCATTGCTTGCACTCGCAA
AACTGTTGTTGTACTCATTCGGTCTTTTATTGATCAAGAAAGCAACCGAT
TCAGTTTACAGCCAAGCCATTACGGTGTGTTTTACTTAAGGACTCAAGAC
TCTGCGGAACTGGAAGTAGGCGTTCAAGCGTGGGAAACCGATCACGATGT
CGATCTTCACCGCGTTCTTTCACTCCCTGGCGGTTGTGATTGA
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