Gchil1641.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1641.t1
Unique NameGchil1641.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length218
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1386469..1387122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD26982
Preferred nameGGPS1
PFAMspolyprenyl_synt
Max annot lvl2759|Eukaryota
KEGG rclassRC00279
KEGG koko:K13789
KEGG ReactionR01658,R02003,R02061
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00364,M00366
Evalue9.47e-99
EggNOG OGsCOG0142@1|root,KOG0776@2759|Eukaryota
EC2.5.1.1,2.5.1.10,2.5.1.29
Descriptionisoprenoid biosynthetic process
COG categoryH
BiGG ReactioniRC1080.CRv4_Au5_s12_g2763_t1
BRITEko00000,ko00001,ko00002,ko01000,ko01006
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1641Gchil1641Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1386040..1387122 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1641.t1.start1Gchil1641.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1386469..1386471 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1641.t1.CDS1Gchil1641.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1386469..1387122 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1641.t1.exon1Gchil1641.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1386469..1387122 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1641.t1.stop1Gchil1641.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1387120..1387122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1641.t1Gchil1641.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1386469..1387122 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1641.t1 ID=Gchil1641.t1|Name=Gchil1641.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=218bp
MSLIHDDLPSMDNDDFRRGKPTNHKVYGEDIAILAGDALLSYAFEYVARN
TRSVDPARVVEVLALLTNSVGPHGLAGGQVMDIKSEGQSDISIDTLTWIH
THKTAALLRVSCACGAILGGASSEDVRRVSEFAVKTGLAFQIADDVLDIT
QSTEVLGKTAGKDLATEKATYPRLLGLDGSKKQAQTLIQQGKESLAPYGE
RAHTLFALADFIISRNN*
back to top

spliced messenger RNA

>Gchil1641.t1 ID=Gchil1641.t1|Name=Gchil1641.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=654bp|location=Sequence derived from alignment at tig00004403_pilon:1386469..1387122+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCTCATCCACGACGACCTGCCTAGCATGGACAACGACGACTTCCG
CCGCGGCAAGCCCACAAACCACAAGGTGTACGGCGAGGACATTGCAATTC
TGGCTGGCGATGCGCTTCTCTCTTATGCCTTCGAGTACGTTGCGCGTAAC
ACACGCTCGGTCGATCCGGCACGCGTCGTGGAGGTACTCGCCTTGCTCAC
CAACAGCGTTGGACCGCATGGGCTGGCTGGTGGGCAGGTCATGGACATAA
AGTCAGAGGGCCAATCCGACATTTCCATCGACACCCTCACCTGGATTCAT
ACCCACAAGACCGCTGCTCTTCTGCGCGTTAGCTGTGCATGCGGCGCCAT
TTTGGGCGGTGCCTCGAGCGAAGATGTTCGTCGAGTCAGCGAATTCGCCG
TCAAGACCGGTCTAGCTTTCCAAATTGCCGATGATGTGCTGGACATTACA
CAGAGCACGGAGGTACTAGGCAAGACCGCTGGCAAGGATCTTGCAACTGA
AAAGGCCACATATCCAAGGCTGTTAGGCTTAGATGGATCTAAAAAGCAAG
CGCAAACTCTCATCCAACAGGGTAAGGAAAGCCTTGCTCCTTACGGGGAG
CGCGCTCATACGCTTTTCGCGCTTGCCGACTTCATCATTTCTCGCAATAA
CTAG
back to top

protein sequence of Gchil1641.t1

>Gchil1641.t1 ID=Gchil1641.t1|Name=Gchil1641.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=218bp
MSLIHDDLPSMDNDDFRRGKPTNHKVYGEDIAILAGDALLSYAFEYVARN
TRSVDPARVVEVLALLTNSVGPHGLAGGQVMDIKSEGQSDISIDTLTWIH
THKTAALLRVSCACGAILGGASSEDVRRVSEFAVKTGLAFQIADDVLDIT
QSTEVLGKTAGKDLATEKATYPRLLGLDGSKKQAQTLIQQGKESLAPYGE
RAHTLFALADFIISRNN*
back to top

mRNA from alignment at tig00004403_pilon:1386469..1387122+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1641.t1 ID=Gchil1641.t1|Name=Gchil1641.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=654bp|location=Sequence derived from alignment at tig00004403_pilon:1386469..1387122+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCCTCATCCACGACGACCTGCCTAGCATGGACAACGACGACTTCCG
CCGCGGCAAGCCCACAAACCACAAGGTGTACGGCGAGGACATTGCAATTC
TGGCTGGCGATGCGCTTCTCTCTTATGCCTTCGAGTACGTTGCGCGTAAC
ACACGCTCGGTCGATCCGGCACGCGTCGTGGAGGTACTCGCCTTGCTCAC
CAACAGCGTTGGACCGCATGGGCTGGCTGGTGGGCAGGTCATGGACATAA
AGTCAGAGGGCCAATCCGACATTTCCATCGACACCCTCACCTGGATTCAT
ACCCACAAGACCGCTGCTCTTCTGCGCGTTAGCTGTGCATGCGGCGCCAT
TTTGGGCGGTGCCTCGAGCGAAGATGTTCGTCGAGTCAGCGAATTCGCCG
TCAAGACCGGTCTAGCTTTCCAAATTGCCGATGATGTGCTGGACATTACA
CAGAGCACGGAGGTACTAGGCAAGACCGCTGGCAAGGATCTTGCAACTGA
AAAGGCCACATATCCAAGGCTGTTAGGCTTAGATGGATCTAAAAAGCAAG
CGCAAACTCTCATCCAACAGGGTAAGGAAAGCCTTGCTCCTTACGGGGAG
CGCGCTCATACGCTTTTCGCGCTTGCCGACTTCATCATTTCTCGCAATAA
CTAG
back to top

Coding sequence (CDS) from alignment at tig00004403_pilon:1386469..1387122+

>Gchil1641.t1 ID=Gchil1641.t1|Name=Gchil1641.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=654bp|location=Sequence derived from alignment at tig00004403_pilon:1386469..1387122+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCCTCATCCACGACGACCTGCCTAGCATGGACAACGACGACTTCCG
CCGCGGCAAGCCCACAAACCACAAGGTGTACGGCGAGGACATTGCAATTC
TGGCTGGCGATGCGCTTCTCTCTTATGCCTTCGAGTACGTTGCGCGTAAC
ACACGCTCGGTCGATCCGGCACGCGTCGTGGAGGTACTCGCCTTGCTCAC
CAACAGCGTTGGACCGCATGGGCTGGCTGGTGGGCAGGTCATGGACATAA
AGTCAGAGGGCCAATCCGACATTTCCATCGACACCCTCACCTGGATTCAT
ACCCACAAGACCGCTGCTCTTCTGCGCGTTAGCTGTGCATGCGGCGCCAT
TTTGGGCGGTGCCTCGAGCGAAGATGTTCGTCGAGTCAGCGAATTCGCCG
TCAAGACCGGTCTAGCTTTCCAAATTGCCGATGATGTGCTGGACATTACA
CAGAGCACGGAGGTACTAGGCAAGACCGCTGGCAAGGATCTTGCAACTGA
AAAGGCCACATATCCAAGGCTGTTAGGCTTAGATGGATCTAAAAAGCAAG
CGCAAACTCTCATCCAACAGGGTAAGGAAAGCCTTGCTCCTTACGGGGAG
CGCGCTCATACGCTTTTCGCGCTTGCCGACTTCATCATTTCTCGCAATAA
CTAG
back to top