Gchil2625.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2625.t1
Unique NameGchil2625.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length497
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1899589..1901079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708044.1
PFAMsGlyco_transf_8,Mannosyl_trans3
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00171
KEGG koko:K00750
KEGG ReactionR00292,R03681
KEGG Pathwayko00500,ko01100,map00500,map01100
GOsGO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0008194,GO:0008466,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0035251,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046527,GO:0055114,GO:0071704,GO:1901576
Evalue8.5e-87
EggNOG OGsCOG5597@1|root,KOG1950@2759|Eukaryota
EC2.4.1.186
Descriptionglycogenin glucosyltransferase activity
COG categoryM
CAZyGT8
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2625Gchil2625Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1899589..1901079 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2625.t1.stop1Gchil2625.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1899589..1899591 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2625.t1.CDS1Gchil2625.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1899589..1901079 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2625.t1.exon1Gchil2625.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1899589..1901079 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2625.t1.start1Gchil2625.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1901077..1901079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2625.t1Gchil2625.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1899589..1901079 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2625.t1 ID=Gchil2625.t1|Name=Gchil2625.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=497bp
MRCTIGSITLVFFLLFVTVVSCSGDHVESKREAYVSLLYGNTYALPIRVM
MQSLFINSPDSRNLRERVVLQTGDTSEANINRLENEGIRVIRIPPVASPY
IGSAKFHPRFGMVMTKLAVFNMTEYHRVLFIDADSLVLKDLSPLFSCAQF
CATFINPCFFNSGLMLVSPNATMYQDMVSVLPYTPSYDGGDQGFLNSYFP
QMLCAPLFHPDNPRKNMTFARFPFSYHTDHSAYYNRLSFTFEKNPGCGPA
RDIEWLGPPFMKPWIWWGYSIFDLSWVWHKYRQQLWNDIAVDFHMNGFSL
LSAVAAYVWLSNLFLIFDSSPWTFHILESISQFSFHKLSPRMNSFYLSFI
GFVSWSVAVFTSLRVVPTTMPPLQAFFSFAHVRALFNSVVLLFVGALCLA
QTSSILSEAKLKYHKPRFADCAKRIVVWSLADALYLIVWDFVMWNINFSS
IWNRIMFLVVIVASQLVFTFIMLLDVAKTCTRVVQDIGSLRAFNLP*
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spliced messenger RNA

>Gchil2625.t1 ID=Gchil2625.t1|Name=Gchil2625.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1491bp|location=Sequence derived from alignment at tig00004400_pilon:1899589..1901079- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTGCACTATCGGGTCAATCACATTAGTTTTCTTCCTTCTTTTTGT
CACCGTCGTGTCGTGCAGTGGCGATCACGTCGAATCCAAACGTGAGGCAT
ACGTTAGTCTTCTGTACGGCAACACCTATGCGTTACCGATCCGAGTCATG
ATGCAATCCCTGTTCATCAACAGCCCTGACTCCCGGAATCTGAGAGAGCG
AGTTGTGCTTCAAACCGGAGATACATCTGAGGCCAACATCAATCGACTTG
AGAACGAGGGTATCCGTGTAATTCGCATTCCGCCGGTTGCATCTCCGTAC
ATTGGGTCTGCAAAATTTCACCCTAGGTTCGGCATGGTCATGACAAAGCT
CGCCGTCTTCAACATGACAGAATACCACCGAGTTCTTTTCATTGATGCCG
ATTCGCTCGTGCTAAAGGATCTATCGCCTTTGTTTTCTTGCGCTCAGTTT
TGTGCAACCTTCATAAATCCATGTTTCTTTAACAGTGGGCTTATGCTTGT
TTCCCCCAATGCCACCATGTACCAGGACATGGTGAGCGTTCTACCCTACA
CCCCCTCCTATGATGGAGGAGATCAAGGGTTCCTCAACTCATACTTTCCG
CAAATGCTATGTGCACCACTATTTCACCCAGACAATCCAAGGAAGAATAT
GACCTTTGCTAGATTCCCTTTCTCTTATCATACTGATCACAGCGCATACT
ACAACAGATTATCTTTTACATTTGAAAAGAACCCGGGATGTGGACCAGCA
CGAGACATTGAATGGTTAGGCCCTCCGTTCATGAAACCTTGGATTTGGTG
GGGTTATAGCATTTTCGATCTTAGTTGGGTGTGGCACAAGTATCGCCAAC
AACTATGGAATGATATTGCTGTCGATTTTCACATGAACGGGTTTTCTCTC
TTATCTGCTGTTGCTGCGTATGTCTGGCTTTCTAATTTGTTCCTAATCTT
CGATTCTTCGCCATGGACCTTTCATATCCTCGAAAGTATCTCACAATTCT
CGTTCCACAAGCTTTCGCCACGAATGAACTCTTTTTATTTGTCCTTTATT
GGGTTCGTCAGTTGGAGTGTTGCCGTATTTACTTCTTTAAGAGTCGTTCC
GACAACAATGCCTCCCCTGCAGGCTTTCTTTTCATTTGCCCATGTCAGAG
CATTGTTCAACTCTGTGGTTCTACTTTTCGTTGGAGCATTATGTTTGGCA
CAGACATCTTCAATTCTCTCAGAGGCAAAACTGAAGTATCATAAACCACG
ATTCGCCGACTGTGCGAAGAGAATAGTTGTGTGGTCTTTAGCTGATGCGT
TATACCTTATTGTCTGGGACTTCGTCATGTGGAATATCAATTTTTCTTCA
ATCTGGAATCGTATCATGTTTCTAGTTGTCATAGTTGCTTCACAGCTTGT
CTTCACCTTTATAATGCTCCTGGATGTTGCAAAGACATGTACGCGCGTGG
TCCAGGATATTGGTTCCCTCCGCGCATTTAACTTACCTTGA
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protein sequence of Gchil2625.t1

>Gchil2625.t1 ID=Gchil2625.t1|Name=Gchil2625.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=497bp
MRCTIGSITLVFFLLFVTVVSCSGDHVESKREAYVSLLYGNTYALPIRVM
MQSLFINSPDSRNLRERVVLQTGDTSEANINRLENEGIRVIRIPPVASPY
IGSAKFHPRFGMVMTKLAVFNMTEYHRVLFIDADSLVLKDLSPLFSCAQF
CATFINPCFFNSGLMLVSPNATMYQDMVSVLPYTPSYDGGDQGFLNSYFP
QMLCAPLFHPDNPRKNMTFARFPFSYHTDHSAYYNRLSFTFEKNPGCGPA
RDIEWLGPPFMKPWIWWGYSIFDLSWVWHKYRQQLWNDIAVDFHMNGFSL
LSAVAAYVWLSNLFLIFDSSPWTFHILESISQFSFHKLSPRMNSFYLSFI
GFVSWSVAVFTSLRVVPTTMPPLQAFFSFAHVRALFNSVVLLFVGALCLA
QTSSILSEAKLKYHKPRFADCAKRIVVWSLADALYLIVWDFVMWNINFSS
IWNRIMFLVVIVASQLVFTFIMLLDVAKTCTRVVQDIGSLRAFNLP*
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mRNA from alignment at tig00004400_pilon:1899589..1901079-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2625.t1 ID=Gchil2625.t1|Name=Gchil2625.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1491bp|location=Sequence derived from alignment at tig00004400_pilon:1899589..1901079- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTTGCACTATCGGGTCAATCACATTAGTTTTCTTCCTTCTTTTTGT
CACCGTCGTGTCGTGCAGTGGCGATCACGTCGAATCCAAACGTGAGGCAT
ACGTTAGTCTTCTGTACGGCAACACCTATGCGTTACCGATCCGAGTCATG
ATGCAATCCCTGTTCATCAACAGCCCTGACTCCCGGAATCTGAGAGAGCG
AGTTGTGCTTCAAACCGGAGATACATCTGAGGCCAACATCAATCGACTTG
AGAACGAGGGTATCCGTGTAATTCGCATTCCGCCGGTTGCATCTCCGTAC
ATTGGGTCTGCAAAATTTCACCCTAGGTTCGGCATGGTCATGACAAAGCT
CGCCGTCTTCAACATGACAGAATACCACCGAGTTCTTTTCATTGATGCCG
ATTCGCTCGTGCTAAAGGATCTATCGCCTTTGTTTTCTTGCGCTCAGTTT
TGTGCAACCTTCATAAATCCATGTTTCTTTAACAGTGGGCTTATGCTTGT
TTCCCCCAATGCCACCATGTACCAGGACATGGTGAGCGTTCTACCCTACA
CCCCCTCCTATGATGGAGGAGATCAAGGGTTCCTCAACTCATACTTTCCG
CAAATGCTATGTGCACCACTATTTCACCCAGACAATCCAAGGAAGAATAT
GACCTTTGCTAGATTCCCTTTCTCTTATCATACTGATCACAGCGCATACT
ACAACAGATTATCTTTTACATTTGAAAAGAACCCGGGATGTGGACCAGCA
CGAGACATTGAATGGTTAGGCCCTCCGTTCATGAAACCTTGGATTTGGTG
GGGTTATAGCATTTTCGATCTTAGTTGGGTGTGGCACAAGTATCGCCAAC
AACTATGGAATGATATTGCTGTCGATTTTCACATGAACGGGTTTTCTCTC
TTATCTGCTGTTGCTGCGTATGTCTGGCTTTCTAATTTGTTCCTAATCTT
CGATTCTTCGCCATGGACCTTTCATATCCTCGAAAGTATCTCACAATTCT
CGTTCCACAAGCTTTCGCCACGAATGAACTCTTTTTATTTGTCCTTTATT
GGGTTCGTCAGTTGGAGTGTTGCCGTATTTACTTCTTTAAGAGTCGTTCC
GACAACAATGCCTCCCCTGCAGGCTTTCTTTTCATTTGCCCATGTCAGAG
CATTGTTCAACTCTGTGGTTCTACTTTTCGTTGGAGCATTATGTTTGGCA
CAGACATCTTCAATTCTCTCAGAGGCAAAACTGAAGTATCATAAACCACG
ATTCGCCGACTGTGCGAAGAGAATAGTTGTGTGGTCTTTAGCTGATGCGT
TATACCTTATTGTCTGGGACTTCGTCATGTGGAATATCAATTTTTCTTCA
ATCTGGAATCGTATCATGTTTCTAGTTGTCATAGTTGCTTCACAGCTTGT
CTTCACCTTTATAATGCTCCTGGATGTTGCAAAGACATGTACGCGCGTGG
TCCAGGATATTGGTTCCCTCCGCGCATTTAACTTACCTTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:1899589..1901079-

>Gchil2625.t1 ID=Gchil2625.t1|Name=Gchil2625.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1491bp|location=Sequence derived from alignment at tig00004400_pilon:1899589..1901079- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTTGCACTATCGGGTCAATCACATTAGTTTTCTTCCTTCTTTTTGT
CACCGTCGTGTCGTGCAGTGGCGATCACGTCGAATCCAAACGTGAGGCAT
ACGTTAGTCTTCTGTACGGCAACACCTATGCGTTACCGATCCGAGTCATG
ATGCAATCCCTGTTCATCAACAGCCCTGACTCCCGGAATCTGAGAGAGCG
AGTTGTGCTTCAAACCGGAGATACATCTGAGGCCAACATCAATCGACTTG
AGAACGAGGGTATCCGTGTAATTCGCATTCCGCCGGTTGCATCTCCGTAC
ATTGGGTCTGCAAAATTTCACCCTAGGTTCGGCATGGTCATGACAAAGCT
CGCCGTCTTCAACATGACAGAATACCACCGAGTTCTTTTCATTGATGCCG
ATTCGCTCGTGCTAAAGGATCTATCGCCTTTGTTTTCTTGCGCTCAGTTT
TGTGCAACCTTCATAAATCCATGTTTCTTTAACAGTGGGCTTATGCTTGT
TTCCCCCAATGCCACCATGTACCAGGACATGGTGAGCGTTCTACCCTACA
CCCCCTCCTATGATGGAGGAGATCAAGGGTTCCTCAACTCATACTTTCCG
CAAATGCTATGTGCACCACTATTTCACCCAGACAATCCAAGGAAGAATAT
GACCTTTGCTAGATTCCCTTTCTCTTATCATACTGATCACAGCGCATACT
ACAACAGATTATCTTTTACATTTGAAAAGAACCCGGGATGTGGACCAGCA
CGAGACATTGAATGGTTAGGCCCTCCGTTCATGAAACCTTGGATTTGGTG
GGGTTATAGCATTTTCGATCTTAGTTGGGTGTGGCACAAGTATCGCCAAC
AACTATGGAATGATATTGCTGTCGATTTTCACATGAACGGGTTTTCTCTC
TTATCTGCTGTTGCTGCGTATGTCTGGCTTTCTAATTTGTTCCTAATCTT
CGATTCTTCGCCATGGACCTTTCATATCCTCGAAAGTATCTCACAATTCT
CGTTCCACAAGCTTTCGCCACGAATGAACTCTTTTTATTTGTCCTTTATT
GGGTTCGTCAGTTGGAGTGTTGCCGTATTTACTTCTTTAAGAGTCGTTCC
GACAACAATGCCTCCCCTGCAGGCTTTCTTTTCATTTGCCCATGTCAGAG
CATTGTTCAACTCTGTGGTTCTACTTTTCGTTGGAGCATTATGTTTGGCA
CAGACATCTTCAATTCTCTCAGAGGCAAAACTGAAGTATCATAAACCACG
ATTCGCCGACTGTGCGAAGAGAATAGTTGTGTGGTCTTTAGCTGATGCGT
TATACCTTATTGTCTGGGACTTCGTCATGTGGAATATCAATTTTTCTTCA
ATCTGGAATCGTATCATGTTTCTAGTTGTCATAGTTGCTTCACAGCTTGT
CTTCACCTTTATAATGCTCCTGGATGTTGCAAAGACATGTACGCGCGTGG
TCCAGGATATTGGTTCCCTCCGCGCATTTAACTTACCTTGA
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