Gchil2630.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2630.t1
Unique NameGchil2630.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length288
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:2023865..2024728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog50452.A0A087GT98
PFAMsMethyltransf_8
Max annot lvl35493|Streptophyta
KEGG koko:K14850
GOsGO:0000183,GO:0000785,GO:0000792,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005677,GO:0005694,GO:0005730,GO:0006325,GO:0006342,GO:0006355,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016740,GO:0016741,GO:0017053,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0033553,GO:0035064,GO:0040029,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071840,GO:0080090,GO:0090568,GO:0140030,GO:0140034,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Evalue9.81e-54
EggNOG OGsKOG3045@1|root,KOG3045@2759|Eukaryota,37KY0@33090|Viridiplantae,3GB5X@35493|Streptophyta,3HNDI@3699|Brassicales
EC2.1.1.287
DescriptionHypothetical methyltransferase
COG categoryA
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2630Gchil2630Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 2023865..2024728 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2630.t1.start1Gchil2630.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 2023865..2023867 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2630.t1.CDS1Gchil2630.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2023865..2024728 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2630.t1.exon1Gchil2630.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2023865..2024728 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2630.t1.stop1Gchil2630.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 2024726..2024728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2630.t1Gchil2630.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 2023865..2024728 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2630.t1 ID=Gchil2630.t1|Name=Gchil2630.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=288bp
MQNIPRVESEGRLISHAPQCAITKKPRKLSALQQRMKKKLSSAQFRMLNE
SMYTNTGAASKAMMDANPDLFQIYHSGYAEQVKQWPTNPLDRIIQFLSKQ
KETLSIVDLGCGEARLAKQLPHQNVRSFDLVAVNDSVCACDISNLPLSPD
YADVAVFCLSLMGTDYAQFINEARRVLKTEGLLLIAEVASRFEAHDPSRF
VKGVEILGFRFLRDHPLTSLSQQKEHSSKRRRKTKQSSQTSDDAHIPKMS
AFFYMFAFRKIEGKNVDGQAHQDSKLPPLAACLYKRR*
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spliced messenger RNA

>Gchil2630.t1 ID=Gchil2630.t1|Name=Gchil2630.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00004400_pilon:2023865..2024728+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAACATTCCTCGCGTCGAATCGGAGGGGCGCTTAATTTCTCACGC
GCCACAATGTGCAATCACCAAGAAGCCACGAAAGCTCTCCGCACTCCAGC
AGCGCATGAAAAAGAAACTGTCTTCAGCCCAATTCCGCATGCTGAATGAA
TCGATGTACACCAATACCGGCGCCGCGTCAAAGGCCATGATGGACGCTAA
TCCAGATCTTTTCCAAATCTACCACTCAGGCTACGCTGAACAGGTCAAAC
AATGGCCCACCAATCCATTGGACCGCATTATCCAATTCCTCAGCAAGCAA
AAAGAAACGCTCAGCATTGTTGATTTGGGCTGCGGTGAAGCACGTTTGGC
CAAACAACTTCCGCATCAAAATGTGCGCTCTTTCGACCTCGTCGCGGTGA
ACGACAGTGTGTGTGCGTGTGATATTTCCAACCTGCCGCTATCACCGGAC
TACGCCGATGTCGCCGTTTTCTGTCTCTCGCTTATGGGCACCGACTACGC
CCAGTTCATCAATGAAGCACGTCGCGTTTTGAAGACAGAAGGTTTGTTAC
TTATTGCAGAGGTTGCGTCGAGATTTGAAGCACATGATCCTTCCCGATTT
GTGAAAGGAGTGGAAATACTCGGTTTTCGTTTTCTTCGCGATCACCCGCT
TACGAGTCTTTCGCAGCAGAAAGAACACTCTTCCAAGCGAAGGAGGAAAA
CAAAGCAATCGTCACAAACTTCTGACGATGCCCATATACCCAAGATGAGT
GCGTTTTTCTATATGTTCGCGTTTAGAAAAATTGAAGGGAAGAATGTTGA
CGGGCAAGCACATCAGGATTCCAAACTACCGCCGCTTGCTGCTTGTCTGT
ATAAACGAAGATGA
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protein sequence of Gchil2630.t1

>Gchil2630.t1 ID=Gchil2630.t1|Name=Gchil2630.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=288bp
MQNIPRVESEGRLISHAPQCAITKKPRKLSALQQRMKKKLSSAQFRMLNE
SMYTNTGAASKAMMDANPDLFQIYHSGYAEQVKQWPTNPLDRIIQFLSKQ
KETLSIVDLGCGEARLAKQLPHQNVRSFDLVAVNDSVCACDISNLPLSPD
YADVAVFCLSLMGTDYAQFINEARRVLKTEGLLLIAEVASRFEAHDPSRF
VKGVEILGFRFLRDHPLTSLSQQKEHSSKRRRKTKQSSQTSDDAHIPKMS
AFFYMFAFRKIEGKNVDGQAHQDSKLPPLAACLYKRR*
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mRNA from alignment at tig00004400_pilon:2023865..2024728+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2630.t1 ID=Gchil2630.t1|Name=Gchil2630.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00004400_pilon:2023865..2024728+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAAACATTCCTCGCGTCGAATCGGAGGGGCGCTTAATTTCTCACGC
GCCACAATGTGCAATCACCAAGAAGCCACGAAAGCTCTCCGCACTCCAGC
AGCGCATGAAAAAGAAACTGTCTTCAGCCCAATTCCGCATGCTGAATGAA
TCGATGTACACCAATACCGGCGCCGCGTCAAAGGCCATGATGGACGCTAA
TCCAGATCTTTTCCAAATCTACCACTCAGGCTACGCTGAACAGGTCAAAC
AATGGCCCACCAATCCATTGGACCGCATTATCCAATTCCTCAGCAAGCAA
AAAGAAACGCTCAGCATTGTTGATTTGGGCTGCGGTGAAGCACGTTTGGC
CAAACAACTTCCGCATCAAAATGTGCGCTCTTTCGACCTCGTCGCGGTGA
ACGACAGTGTGTGTGCGTGTGATATTTCCAACCTGCCGCTATCACCGGAC
TACGCCGATGTCGCCGTTTTCTGTCTCTCGCTTATGGGCACCGACTACGC
CCAGTTCATCAATGAAGCACGTCGCGTTTTGAAGACAGAAGGTTTGTTAC
TTATTGCAGAGGTTGCGTCGAGATTTGAAGCACATGATCCTTCCCGATTT
GTGAAAGGAGTGGAAATACTCGGTTTTCGTTTTCTTCGCGATCACCCGCT
TACGAGTCTTTCGCAGCAGAAAGAACACTCTTCCAAGCGAAGGAGGAAAA
CAAAGCAATCGTCACAAACTTCTGACGATGCCCATATACCCAAGATGAGT
GCGTTTTTCTATATGTTCGCGTTTAGAAAAATTGAAGGGAAGAATGTTGA
CGGGCAAGCACATCAGGATTCCAAACTACCGCCGCTTGCTGCTTGTCTGT
ATAAACGAAGATGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:2023865..2024728+

>Gchil2630.t1 ID=Gchil2630.t1|Name=Gchil2630.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=864bp|location=Sequence derived from alignment at tig00004400_pilon:2023865..2024728+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAAACATTCCTCGCGTCGAATCGGAGGGGCGCTTAATTTCTCACGC
GCCACAATGTGCAATCACCAAGAAGCCACGAAAGCTCTCCGCACTCCAGC
AGCGCATGAAAAAGAAACTGTCTTCAGCCCAATTCCGCATGCTGAATGAA
TCGATGTACACCAATACCGGCGCCGCGTCAAAGGCCATGATGGACGCTAA
TCCAGATCTTTTCCAAATCTACCACTCAGGCTACGCTGAACAGGTCAAAC
AATGGCCCACCAATCCATTGGACCGCATTATCCAATTCCTCAGCAAGCAA
AAAGAAACGCTCAGCATTGTTGATTTGGGCTGCGGTGAAGCACGTTTGGC
CAAACAACTTCCGCATCAAAATGTGCGCTCTTTCGACCTCGTCGCGGTGA
ACGACAGTGTGTGTGCGTGTGATATTTCCAACCTGCCGCTATCACCGGAC
TACGCCGATGTCGCCGTTTTCTGTCTCTCGCTTATGGGCACCGACTACGC
CCAGTTCATCAATGAAGCACGTCGCGTTTTGAAGACAGAAGGTTTGTTAC
TTATTGCAGAGGTTGCGTCGAGATTTGAAGCACATGATCCTTCCCGATTT
GTGAAAGGAGTGGAAATACTCGGTTTTCGTTTTCTTCGCGATCACCCGCT
TACGAGTCTTTCGCAGCAGAAAGAACACTCTTCCAAGCGAAGGAGGAAAA
CAAAGCAATCGTCACAAACTTCTGACGATGCCCATATACCCAAGATGAGT
GCGTTTTTCTATATGTTCGCGTTTAGAAAAATTGAAGGGAAGAATGTTGA
CGGGCAAGCACATCAGGATTCCAAACTACCGCCGCTTGCTGCTTGTCTGT
ATAAACGAAGATGA
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