Gchil2646.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2646.t1
Unique NameGchil2646.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length269
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:2123715..2124581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog192875.XP_004347604.1
Preferred nameOVCA2
PFAMsFSH1
Max annot lvl33154|Opisthokonta
KEGG rclassRC00021,RC03180
KEGG koko:K07561
KEGG ReactionR10455
GOsGO:0001101,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0008150,GO:0010033,GO:0016787,GO:0032526,GO:0033993,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0050896,GO:1901700
Evalue6.1e-38
EggNOG OGsKOG2551@1|root,KOG2551@2759|Eukaryota,39X34@33154|Opisthokonta
EC2.5.1.108
Descriptionresponse to retinoic acid
COG categoryE
BRITEko00000,ko01000,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2646Gchil2646Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 2123715..2124581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2646.t1Gchil2646.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 2123715..2124581 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2646.t1.start1Gchil2646.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 2123715..2123717 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2646.t1.CDS1Gchil2646.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2123715..2124137 +
Gchil2646.t1.CDS2Gchil2646.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2124198..2124581 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2646.t1.exon1Gchil2646.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2123715..2124137 +
Gchil2646.t1.exon2Gchil2646.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2124198..2124581 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2646.t1.intron1Gchil2646.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 2124138..2124197 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2646.t1.stop1Gchil2646.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 2124579..2124581 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2646.t1 ID=Gchil2646.t1|Name=Gchil2646.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=269bp
MTKKPLRIACLHGYCQNSLSFRRKTGSLRKSLTRSTERVRADLSSSPFTP
ADDNSPLCELVYLDAPFVVEQHLTAPATPLSYKDPNSDNYAVLRPTNIRF
QATYGSPESAPRAWWIADRQRTTYIGLNHTISYLADVFKESHFDGVLGFS
QGAVLASILCAVREQPAFESLQFALLFSGFQSRATVHQPFYEKSIKVPSF
HVWGEQDGIVPPKRSEELKDKFERQTRSHYVHQKGHLVPSDAGVRRAVSR
FLLPFSYKINELQVSATL*
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spliced messenger RNA

>Gchil2646.t1 ID=Gchil2646.t1|Name=Gchil2646.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=807bp|location=Sequence derived from alignment at tig00004400_pilon:2123715..2124581+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAAGAAACCTCTACGAATCGCATGTTTGCACGGATACTGTCAAAA
CTCATTGAGTTTTCGCCGCAAAACTGGTTCGCTCCGAAAATCATTGACCC
GATCAACAGAAAGAGTGCGAGCAGATCTTAGTTCCAGCCCTTTCACCCCC
GCAGATGATAATTCTCCTCTCTGTGAACTAGTCTACCTGGATGCACCGTT
CGTTGTTGAACAACACCTGACAGCCCCTGCCACACCATTGTCGTACAAGG
ATCCCAATAGTGACAACTACGCAGTCCTGCGTCCCACAAACATACGATTT
CAAGCTACCTATGGTTCTCCTGAATCTGCGCCACGTGCATGGTGGATTGC
TGACAGACAACGAACTACGTACATTGGCTTAAACCACACTATCTCATACT
TAGCGGACGTGTTCAAAGAAAGCCATTTTGACGGCGTACTGGGATTCTCG
CAAGGGGCCGTTCTTGCATCGATTCTGTGCGCAGTGCGAGAACAACCAGC
CTTTGAATCGTTACAATTTGCGCTCCTTTTTTCCGGGTTTCAATCCCGTG
CAACTGTGCATCAGCCGTTCTATGAAAAATCAATCAAAGTACCGAGCTTT
CACGTGTGGGGTGAGCAAGACGGGATAGTTCCGCCAAAGAGGAGCGAAGA
GCTCAAAGATAAATTTGAAAGGCAGACCAGAAGCCATTACGTGCATCAAA
AAGGGCACCTGGTACCAAGCGATGCAGGTGTGAGACGTGCGGTATCACGA
TTTCTACTCCCATTTTCCTATAAGATCAACGAGCTTCAAGTAAGCGCGAC
TTTATGA
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protein sequence of Gchil2646.t1

>Gchil2646.t1 ID=Gchil2646.t1|Name=Gchil2646.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=269bp
MTKKPLRIACLHGYCQNSLSFRRKTGSLRKSLTRSTERVRADLSSSPFTP
ADDNSPLCELVYLDAPFVVEQHLTAPATPLSYKDPNSDNYAVLRPTNIRF
QATYGSPESAPRAWWIADRQRTTYIGLNHTISYLADVFKESHFDGVLGFS
QGAVLASILCAVREQPAFESLQFALLFSGFQSRATVHQPFYEKSIKVPSF
HVWGEQDGIVPPKRSEELKDKFERQTRSHYVHQKGHLVPSDAGVRRAVSR
FLLPFSYKINELQVSATL*
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mRNA from alignment at tig00004400_pilon:2123715..2124581+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2646.t1 ID=Gchil2646.t1|Name=Gchil2646.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00004400_pilon:2123715..2124581+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAAAGAAACCTCTACGAATCGCATGTTTGCACGGATACTGTCAAAA
CTCATTGAGTTTTCGCCGCAAAACTGGTTCGCTCCGAAAATCATTGACCC
GATCAACAGAAAGAGTGCGAGCAGATCTTAGTTCCAGCCCTTTCACCCCC
GCAGATGATAATTCTCCTCTCTGTGAACTAGTCTACCTGGATGCACCGTT
CGTTGTTGAACAACACCTGACAGCCCCTGCCACACCATTGTCGTACAAGG
ATCCCAATAGTGACAACTACGCAGTCCTGCGTCCCACAAACATACGATTT
CAAGCTACCTATGGTTCTCCTGAATCTGCGCCACGTGCATGGTGGATTGC
TGACAGACAACGAACTACGTACATTGGCTTAAACCACACTATCTCATACT
TAGCGGACGTGTTCAAAGAAAGCGTAAGTATTACAATGTCATCCCTTTTA
TACAAGCTTTATTATCTGACATAAACGAGTCAGCATTTTGACGGCGTACT
GGGATTCTCGCAAGGGGCCGTTCTTGCATCGATTCTGTGCGCAGTGCGAG
AACAACCAGCCTTTGAATCGTTACAATTTGCGCTCCTTTTTTCCGGGTTT
CAATCCCGTGCAACTGTGCATCAGCCGTTCTATGAAAAATCAATCAAAGT
ACCGAGCTTTCACGTGTGGGGTGAGCAAGACGGGATAGTTCCGCCAAAGA
GGAGCGAAGAGCTCAAAGATAAATTTGAAAGGCAGACCAGAAGCCATTAC
GTGCATCAAAAAGGGCACCTGGTACCAAGCGATGCAGGTGTGAGACGTGC
GGTATCACGATTTCTACTCCCATTTTCCTATAAGATCAACGAGCTTCAAG
TAAGCGCGACTTTATGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:2123715..2124581+

>Gchil2646.t1 ID=Gchil2646.t1|Name=Gchil2646.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=807bp|location=Sequence derived from alignment at tig00004400_pilon:2123715..2124581+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAAAGAAACCTCTACGAATCGCATGTTTGCACGGATACTGTCAAAA
CTCATTGAGTTTTCGCCGCAAAACTGGTTCGCTCCGAAAATCATTGACCC
GATCAACAGAAAGAGTGCGAGCAGATCTTAGTTCCAGCCCTTTCACCCCC
GCAGATGATAATTCTCCTCTCTGTGAACTAGTCTACCTGGATGCACCGTT
CGTTGTTGAACAACACCTGACAGCCCCTGCCACACCATTGTCGTACAAGG
ATCCCAATAGTGACAACTACGCAGTCCTGCGTCCCACAAACATACGATTT
CAAGCTACCTATGGTTCTCCTGAATCTGCGCCACGTGCATGGTGGATTGC
TGACAGACAACGAACTACGTACATTGGCTTAAACCACACTATCTCATACT
TAGCGGACGTGTTCAAAGAAAGCCATTTTGACGGCGTACTGGGATTCTCG
CAAGGGGCCGTTCTTGCATCGATTCTGTGCGCAGTGCGAGAACAACCAGC
CTTTGAATCGTTACAATTTGCGCTCCTTTTTTCCGGGTTTCAATCCCGTG
CAACTGTGCATCAGCCGTTCTATGAAAAATCAATCAAAGTACCGAGCTTT
CACGTGTGGGGTGAGCAAGACGGGATAGTTCCGCCAAAGAGGAGCGAAGA
GCTCAAAGATAAATTTGAAAGGCAGACCAGAAGCCATTACGTGCATCAAA
AAGGGCACCTGGTACCAAGCGATGCAGGTGTGAGACGTGCGGTATCACGA
TTTCTACTCCCATTTTCCTATAAGATCAACGAGCTTCAAGTAAGCGCGAC
TTTATGA
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