Gchil2585.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2585.t1
Unique NameGchil2585.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length666
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1699479..1701569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FKC6
Preferred nameMIC60
PFAMsMitofilin
Max annot lvl2759|Eukaryota
KEGG koko:K17785
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005886,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0030061,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042407,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044284,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045041,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0061617,GO:0065002,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0098573,GO:0098796,GO:0098798,GO:0098800,GO:1990542
Evalue7.41e-13
EggNOG OGsKOG1854@1|root,KOG1854@2759|Eukaryota
Descriptioncristae formation
COG categoryS
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2585Gchil2585Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1699479..1701569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2585.t1Gchil2585.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1699479..1701569 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2585.t1.start1Gchil2585.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1699479..1699481 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2585.t1.CDS1Gchil2585.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1699479..1699689 +
Gchil2585.t1.CDS2Gchil2585.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1699783..1701569 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2585.t1.exon1Gchil2585.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1699479..1699689 +
Gchil2585.t1.exon2Gchil2585.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1699783..1701569 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2585.t1.intron1Gchil2585.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 1699690..1699782 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2585.t1.stop1Gchil2585.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1701567..1701569 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2585.t1 ID=Gchil2585.t1|Name=Gchil2585.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=666bp
MFRSSTTSAFLTNKRTLSTSASTSPPSSGTPPPPSAPTPAPRPSLVRRGT
PILLVGFGTGLFLRQVYSDGEFRASVENAFPPSAKFFSQLFDLLPKSISG
ASLRTEPISKETTTKTSDNQKSASDSSTLPTTYHPINKVLQEAEASLNES
SSTTDTNSDPTTSTEKEPSANHFDQVKPPNAQIAEHLVAKEQSAITDKQK
QKPVAAIELPKVEPVNKENTTLPKPVPFPAIDMGDSAVGSEKEDKNGQND
APVRSTKGKLARLLGKGDFEASRVISPDLVDDSEYMKPNLGNAPSISIFD
SIPSAPELPIAGSTKALTVPASSVEQSKVSEQQQNEVEALRSEIRSQLKW
EAVRLQEAVRSQLIEDKKIAAKEVSLMAEKHSEELTKVREDAMIQAERVL
VERTLKIREEAQKQRDDELNKMLAEKESELRETLATEYAELQRTATEGRE
LALTAAKANVSAISGRFEALVEQTEKAKDAARRASSAFMLQENIASSQPF
GKLLKDASGSELGRLVSESVPPSVASKGVSSVDHLKQDFRRASRRGLSAA
LVPESEKGTIWGHLLGAVFSRLKIPVDIRLASNEPPKTNEERIRLAKSFL
DEGNLGGAVATLDSLNGLPGEMMADWLGDAKARIAAQQAAEVLLADAIIA
QISLTKGEDVNMIST*
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spliced messenger RNA

>Gchil2585.t1 ID=Gchil2585.t1|Name=Gchil2585.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1998bp|location=Sequence derived from alignment at tig00004400_pilon:1699479..1701569+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCGATCGTCCACAACATCAGCGTTTCTGACCAACAAGCGGACGTT
GTCTACTTCCGCATCAACATCTCCACCTTCATCGGGAACACCACCCCCGC
CGTCCGCGCCAACGCCAGCCCCTCGACCGAGCTTGGTGCGTCGCGGAACT
CCAATCCTGCTCGTTGGATTTGGCACCGGGCTGTTTCTACGCCAAGTATA
TTCCGACGGAGAATTTCGAGCATCTGTGGAAAACGCATTCCCACCCTCTG
CAAAATTCTTTTCGCAGCTCTTCGATCTTCTTCCAAAGTCTATTTCAGGT
GCATCCCTGCGTACTGAACCAATTTCAAAGGAGACAACGACGAAAACTAG
CGACAATCAGAAGAGCGCAAGCGATTCTTCTACTCTCCCGACCACATATC
ACCCTATAAATAAGGTTCTACAGGAAGCCGAAGCGTCATTGAACGAATCA
TCAAGTACAACGGACACAAATTCAGACCCGACTACAAGCACAGAGAAGGA
ACCATCGGCGAATCATTTCGACCAAGTTAAACCCCCCAATGCCCAGATAG
CAGAGCACCTTGTTGCGAAAGAACAGTCAGCGATCACTGACAAGCAGAAA
CAGAAGCCTGTTGCAGCCATTGAGCTACCAAAAGTCGAGCCCGTGAACAA
AGAAAACACCACTTTGCCTAAACCTGTACCCTTCCCTGCCATCGACATGG
GAGATTCGGCCGTGGGAAGCGAAAAAGAGGACAAAAATGGACAAAATGAT
GCGCCAGTCCGGAGCACAAAGGGGAAGTTGGCGAGACTGCTTGGCAAAGG
TGACTTTGAAGCCTCCAGAGTTATTAGTCCAGATTTGGTTGATGACTCCG
AATACATGAAGCCGAATTTGGGAAATGCCCCGAGCATCAGCATCTTCGAC
TCCATTCCGTCCGCCCCAGAGCTTCCTATCGCCGGATCGACAAAAGCATT
GACTGTTCCAGCTAGTTCAGTCGAACAGTCAAAGGTCAGCGAACAACAGC
AAAATGAAGTTGAAGCGCTCAGATCAGAAATTCGGAGCCAGCTCAAGTGG
GAAGCTGTTCGCCTCCAAGAAGCGGTTCGCTCGCAACTGATTGAGGACAA
GAAGATCGCGGCGAAAGAAGTCTCTCTTATGGCCGAGAAGCATTCCGAAG
AGTTGACAAAAGTTCGAGAGGATGCGATGATTCAGGCCGAACGAGTACTA
GTCGAGAGGACTTTGAAGATAAGGGAGGAGGCCCAAAAACAGAGGGATGA
TGAATTGAACAAGATGTTAGCGGAAAAGGAATCCGAGCTCAGGGAAACGC
TGGCAACGGAATATGCGGAGTTGCAGCGTACTGCGACGGAGGGCAGGGAA
CTGGCTTTAACGGCCGCCAAAGCTAATGTTTCAGCCATATCGGGTAGGTT
CGAGGCTCTTGTGGAGCAGACTGAAAAGGCGAAAGATGCAGCGCGACGTG
CGAGCTCCGCGTTCATGCTACAGGAAAACATTGCTTCAAGTCAACCGTTT
GGAAAGCTCCTCAAAGATGCCAGCGGAAGCGAACTGGGACGCCTTGTTTC
AGAAAGCGTGCCTCCATCCGTCGCATCAAAAGGCGTCTCATCTGTTGATC
ATCTGAAGCAAGATTTCAGGCGGGCCTCAAGGAGGGGGCTCAGCGCAGCG
CTCGTTCCAGAAAGTGAGAAAGGGACCATATGGGGCCACCTGCTTGGCGC
AGTCTTCTCCCGGCTGAAAATACCTGTCGATATTCGCTTGGCATCTAATG
AGCCACCGAAGACTAACGAAGAACGTATTCGATTAGCAAAGAGCTTTCTC
GATGAAGGGAACTTGGGAGGAGCTGTTGCAACTCTTGACTCTCTGAATGG
ACTCCCGGGAGAAATGATGGCGGATTGGCTAGGTGATGCAAAGGCGCGAA
TTGCCGCTCAACAAGCAGCCGAGGTGTTGTTGGCGGATGCCATCATTGCA
CAGATATCTTTAACAAAAGGTGAAGACGTGAACATGATTTCCACCTAG
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protein sequence of Gchil2585.t1

>Gchil2585.t1 ID=Gchil2585.t1|Name=Gchil2585.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=666bp
MFRSSTTSAFLTNKRTLSTSASTSPPSSGTPPPPSAPTPAPRPSLVRRGT
PILLVGFGTGLFLRQVYSDGEFRASVENAFPPSAKFFSQLFDLLPKSISG
ASLRTEPISKETTTKTSDNQKSASDSSTLPTTYHPINKVLQEAEASLNES
SSTTDTNSDPTTSTEKEPSANHFDQVKPPNAQIAEHLVAKEQSAITDKQK
QKPVAAIELPKVEPVNKENTTLPKPVPFPAIDMGDSAVGSEKEDKNGQND
APVRSTKGKLARLLGKGDFEASRVISPDLVDDSEYMKPNLGNAPSISIFD
SIPSAPELPIAGSTKALTVPASSVEQSKVSEQQQNEVEALRSEIRSQLKW
EAVRLQEAVRSQLIEDKKIAAKEVSLMAEKHSEELTKVREDAMIQAERVL
VERTLKIREEAQKQRDDELNKMLAEKESELRETLATEYAELQRTATEGRE
LALTAAKANVSAISGRFEALVEQTEKAKDAARRASSAFMLQENIASSQPF
GKLLKDASGSELGRLVSESVPPSVASKGVSSVDHLKQDFRRASRRGLSAA
LVPESEKGTIWGHLLGAVFSRLKIPVDIRLASNEPPKTNEERIRLAKSFL
DEGNLGGAVATLDSLNGLPGEMMADWLGDAKARIAAQQAAEVLLADAIIA
QISLTKGEDVNMIST*
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mRNA from alignment at tig00004400_pilon:1699479..1701569+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2585.t1 ID=Gchil2585.t1|Name=Gchil2585.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2091bp|location=Sequence derived from alignment at tig00004400_pilon:1699479..1701569+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTCGATCGTCCACAACATCAGCGTTTCTGACCAACAAGCGGACGTT
GTCTACTTCCGCATCAACATCTCCACCTTCATCGGGAACACCACCCCCGC
CGTCCGCGCCAACGCCAGCCCCTCGACCGAGCTTGGTGCGTCGCGGAACT
CCAATCCTGCTCGTTGGATTTGGCACCGGGCTGTTTCTACGCCAAGTATA
TTCCGACGGAGGTGCGTTTTATGCTGATCATCCCATCTCAAGTGTATGTC
TAATTGCGCAATGAGCCACTCCGGTTGAGACTGACCAATCACCGTTTTGT
GCAGAATTTCGAGCATCTGTGGAAAACGCATTCCCACCCTCTGCAAAATT
CTTTTCGCAGCTCTTCGATCTTCTTCCAAAGTCTATTTCAGGTGCATCCC
TGCGTACTGAACCAATTTCAAAGGAGACAACGACGAAAACTAGCGACAAT
CAGAAGAGCGCAAGCGATTCTTCTACTCTCCCGACCACATATCACCCTAT
AAATAAGGTTCTACAGGAAGCCGAAGCGTCATTGAACGAATCATCAAGTA
CAACGGACACAAATTCAGACCCGACTACAAGCACAGAGAAGGAACCATCG
GCGAATCATTTCGACCAAGTTAAACCCCCCAATGCCCAGATAGCAGAGCA
CCTTGTTGCGAAAGAACAGTCAGCGATCACTGACAAGCAGAAACAGAAGC
CTGTTGCAGCCATTGAGCTACCAAAAGTCGAGCCCGTGAACAAAGAAAAC
ACCACTTTGCCTAAACCTGTACCCTTCCCTGCCATCGACATGGGAGATTC
GGCCGTGGGAAGCGAAAAAGAGGACAAAAATGGACAAAATGATGCGCCAG
TCCGGAGCACAAAGGGGAAGTTGGCGAGACTGCTTGGCAAAGGTGACTTT
GAAGCCTCCAGAGTTATTAGTCCAGATTTGGTTGATGACTCCGAATACAT
GAAGCCGAATTTGGGAAATGCCCCGAGCATCAGCATCTTCGACTCCATTC
CGTCCGCCCCAGAGCTTCCTATCGCCGGATCGACAAAAGCATTGACTGTT
CCAGCTAGTTCAGTCGAACAGTCAAAGGTCAGCGAACAACAGCAAAATGA
AGTTGAAGCGCTCAGATCAGAAATTCGGAGCCAGCTCAAGTGGGAAGCTG
TTCGCCTCCAAGAAGCGGTTCGCTCGCAACTGATTGAGGACAAGAAGATC
GCGGCGAAAGAAGTCTCTCTTATGGCCGAGAAGCATTCCGAAGAGTTGAC
AAAAGTTCGAGAGGATGCGATGATTCAGGCCGAACGAGTACTAGTCGAGA
GGACTTTGAAGATAAGGGAGGAGGCCCAAAAACAGAGGGATGATGAATTG
AACAAGATGTTAGCGGAAAAGGAATCCGAGCTCAGGGAAACGCTGGCAAC
GGAATATGCGGAGTTGCAGCGTACTGCGACGGAGGGCAGGGAACTGGCTT
TAACGGCCGCCAAAGCTAATGTTTCAGCCATATCGGGTAGGTTCGAGGCT
CTTGTGGAGCAGACTGAAAAGGCGAAAGATGCAGCGCGACGTGCGAGCTC
CGCGTTCATGCTACAGGAAAACATTGCTTCAAGTCAACCGTTTGGAAAGC
TCCTCAAAGATGCCAGCGGAAGCGAACTGGGACGCCTTGTTTCAGAAAGC
GTGCCTCCATCCGTCGCATCAAAAGGCGTCTCATCTGTTGATCATCTGAA
GCAAGATTTCAGGCGGGCCTCAAGGAGGGGGCTCAGCGCAGCGCTCGTTC
CAGAAAGTGAGAAAGGGACCATATGGGGCCACCTGCTTGGCGCAGTCTTC
TCCCGGCTGAAAATACCTGTCGATATTCGCTTGGCATCTAATGAGCCACC
GAAGACTAACGAAGAACGTATTCGATTAGCAAAGAGCTTTCTCGATGAAG
GGAACTTGGGAGGAGCTGTTGCAACTCTTGACTCTCTGAATGGACTCCCG
GGAGAAATGATGGCGGATTGGCTAGGTGATGCAAAGGCGCGAATTGCCGC
TCAACAAGCAGCCGAGGTGTTGTTGGCGGATGCCATCATTGCACAGATAT
CTTTAACAAAAGGTGAAGACGTGAACATGATTTCCACCTAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:1699479..1701569+

>Gchil2585.t1 ID=Gchil2585.t1|Name=Gchil2585.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1998bp|location=Sequence derived from alignment at tig00004400_pilon:1699479..1701569+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTCGATCGTCCACAACATCAGCGTTTCTGACCAACAAGCGGACGTT
GTCTACTTCCGCATCAACATCTCCACCTTCATCGGGAACACCACCCCCGC
CGTCCGCGCCAACGCCAGCCCCTCGACCGAGCTTGGTGCGTCGCGGAACT
CCAATCCTGCTCGTTGGATTTGGCACCGGGCTGTTTCTACGCCAAGTATA
TTCCGACGGAGAATTTCGAGCATCTGTGGAAAACGCATTCCCACCCTCTG
CAAAATTCTTTTCGCAGCTCTTCGATCTTCTTCCAAAGTCTATTTCAGGT
GCATCCCTGCGTACTGAACCAATTTCAAAGGAGACAACGACGAAAACTAG
CGACAATCAGAAGAGCGCAAGCGATTCTTCTACTCTCCCGACCACATATC
ACCCTATAAATAAGGTTCTACAGGAAGCCGAAGCGTCATTGAACGAATCA
TCAAGTACAACGGACACAAATTCAGACCCGACTACAAGCACAGAGAAGGA
ACCATCGGCGAATCATTTCGACCAAGTTAAACCCCCCAATGCCCAGATAG
CAGAGCACCTTGTTGCGAAAGAACAGTCAGCGATCACTGACAAGCAGAAA
CAGAAGCCTGTTGCAGCCATTGAGCTACCAAAAGTCGAGCCCGTGAACAA
AGAAAACACCACTTTGCCTAAACCTGTACCCTTCCCTGCCATCGACATGG
GAGATTCGGCCGTGGGAAGCGAAAAAGAGGACAAAAATGGACAAAATGAT
GCGCCAGTCCGGAGCACAAAGGGGAAGTTGGCGAGACTGCTTGGCAAAGG
TGACTTTGAAGCCTCCAGAGTTATTAGTCCAGATTTGGTTGATGACTCCG
AATACATGAAGCCGAATTTGGGAAATGCCCCGAGCATCAGCATCTTCGAC
TCCATTCCGTCCGCCCCAGAGCTTCCTATCGCCGGATCGACAAAAGCATT
GACTGTTCCAGCTAGTTCAGTCGAACAGTCAAAGGTCAGCGAACAACAGC
AAAATGAAGTTGAAGCGCTCAGATCAGAAATTCGGAGCCAGCTCAAGTGG
GAAGCTGTTCGCCTCCAAGAAGCGGTTCGCTCGCAACTGATTGAGGACAA
GAAGATCGCGGCGAAAGAAGTCTCTCTTATGGCCGAGAAGCATTCCGAAG
AGTTGACAAAAGTTCGAGAGGATGCGATGATTCAGGCCGAACGAGTACTA
GTCGAGAGGACTTTGAAGATAAGGGAGGAGGCCCAAAAACAGAGGGATGA
TGAATTGAACAAGATGTTAGCGGAAAAGGAATCCGAGCTCAGGGAAACGC
TGGCAACGGAATATGCGGAGTTGCAGCGTACTGCGACGGAGGGCAGGGAA
CTGGCTTTAACGGCCGCCAAAGCTAATGTTTCAGCCATATCGGGTAGGTT
CGAGGCTCTTGTGGAGCAGACTGAAAAGGCGAAAGATGCAGCGCGACGTG
CGAGCTCCGCGTTCATGCTACAGGAAAACATTGCTTCAAGTCAACCGTTT
GGAAAGCTCCTCAAAGATGCCAGCGGAAGCGAACTGGGACGCCTTGTTTC
AGAAAGCGTGCCTCCATCCGTCGCATCAAAAGGCGTCTCATCTGTTGATC
ATCTGAAGCAAGATTTCAGGCGGGCCTCAAGGAGGGGGCTCAGCGCAGCG
CTCGTTCCAGAAAGTGAGAAAGGGACCATATGGGGCCACCTGCTTGGCGC
AGTCTTCTCCCGGCTGAAAATACCTGTCGATATTCGCTTGGCATCTAATG
AGCCACCGAAGACTAACGAAGAACGTATTCGATTAGCAAAGAGCTTTCTC
GATGAAGGGAACTTGGGAGGAGCTGTTGCAACTCTTGACTCTCTGAATGG
ACTCCCGGGAGAAATGATGGCGGATTGGCTAGGTGATGCAAAGGCGCGAA
TTGCCGCTCAACAAGCAGCCGAGGTGTTGTTGGCGGATGCCATCATTGCA
CAGATATCTTTAACAAAAGGTGAAGACGTGAACATGATTTCCACCTAG
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