Gchil2367.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2367.t1
Unique NameGchil2367.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length194
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:173325..173906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705253.1
PFAMsCAAD
Max annot lvl2759|Eukaryota
Evalue3.7e-19
EggNOG OGs2C2SA@1|root,2S2SC@2759|Eukaryota
DescriptionCAAD domains of cyanobacterial aminoacyl-tRNA synthetase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2367Gchil2367Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 173325..173906 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2367.t1.start1Gchil2367.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 173325..173327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2367.t1.CDS1Gchil2367.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 173325..173906 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2367.t1.exon1Gchil2367.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 173325..173906 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2367.t1.stop1Gchil2367.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 173904..173906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2367.t1Gchil2367.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 173325..173906 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2367.t1 ID=Gchil2367.t1|Name=Gchil2367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=194bp
MAPAARAPPLRPAFAAPFALRAWRAHRVVQSIVVHVVPFRVAVTTIPPRR
PPAMAAANPDDSASVAAAAAAPPSSAQFAATQDAPVTGYAPATEYALDSD
ALKERALQVVSDVSQRPLFYTQILAYSLAALVAVTVLRAIVAAVDSIPIL
PGALELIGLSYTVWFFWRYVLFKESRQELLDEVEEFLGRARPQ*
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spliced messenger RNA

>Gchil2367.t1 ID=Gchil2367.t1|Name=Gchil2367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=582bp|location=Sequence derived from alignment at tig00004400_pilon:173325..173906+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCGCCGCTCGCGCGCCCCCGCTTCGCCCGGCCTTTGCCGCGCC
GTTCGCGCTGCGCGCGTGGCGCGCCCACCGCGTGGTGCAGTCCATTGTCG
TTCACGTCGTCCCCTTCCGCGTCGCCGTCACCACCATTcccccgcgacgc
ccgcccgccatggccgccgccaaccccgacgactccgcttccgtcgccgc
cgccgccgccgcgccgccctcctccgcgcagttcgccgccacgcaggacg
cccccgtcaccggctatgcgcccgccaccgAGTACGCCCTAGACTCGGAC
GCTCTCAAGGAGCGCGCCCTGCAGGTCGTGTCCGACGTCTCTCAACGCCC
ACTTTTCTACACCCAGATCTTGGCCTACTCGCTGGCCGCCCTCGTCGCCG
TCACCGTGTTGCGCGCCATTGTGGCCGCCGTCGACTCCATCCCGATCCTG
CCAGGCGCCCTCGAGCTCATCGGCCTCTCCTACACCGTCTGGTTCTTCTG
GAGGTACGTTCTCTTCAAGGAGAGCCGCCAGGAGCTGCTCGACGAGGTTG
AGGAGTTTTTGGGCAGAGCGCGTCCGCAGTAA
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protein sequence of Gchil2367.t1

>Gchil2367.t1 ID=Gchil2367.t1|Name=Gchil2367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=194bp
MAPAARAPPLRPAFAAPFALRAWRAHRVVQSIVVHVVPFRVAVTTIPPRR
PPAMAAANPDDSASVAAAAAAPPSSAQFAATQDAPVTGYAPATEYALDSD
ALKERALQVVSDVSQRPLFYTQILAYSLAALVAVTVLRAIVAAVDSIPIL
PGALELIGLSYTVWFFWRYVLFKESRQELLDEVEEFLGRARPQ*
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mRNA from alignment at tig00004400_pilon:173325..173906+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2367.t1 ID=Gchil2367.t1|Name=Gchil2367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=582bp|location=Sequence derived from alignment at tig00004400_pilon:173325..173906+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCCGCCGCTCGCGCGCCCCCGCTTCGCCCGGCCTTTGCCGCGCC
GTTCGCGCTGCGCGCGTGGCGCGCCCACCGCGTGGTGCAGTCCATTGTCG
TTCACGTCGTCCCCTTCCGCGTCGCCGTCACCACCATTcccccgcgacgc
ccgcccgccatggccgccgccaaccccgacgactccgcttccgtcgccgc
cgccgccgccgcgccgccctcctccgcgcagttcgccgccacgcaggacg
cccccgtcaccggctatgcgcccgccaccgAGTACGCCCTAGACTCGGAC
GCTCTCAAGGAGCGCGCCCTGCAGGTCGTGTCCGACGTCTCTCAACGCCC
ACTTTTCTACACCCAGATCTTGGCCTACTCGCTGGCCGCCCTCGTCGCCG
TCACCGTGTTGCGCGCCATTGTGGCCGCCGTCGACTCCATCCCGATCCTG
CCAGGCGCCCTCGAGCTCATCGGCCTCTCCTACACCGTCTGGTTCTTCTG
GAGGTACGTTCTCTTCAAGGAGAGCCGCCAGGAGCTGCTCGACGAGGTTG
AGGAGTTTTTGGGCAGAGCGCGTCCGCAGTAA
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Coding sequence (CDS) from alignment at tig00004400_pilon:173325..173906+

>Gchil2367.t1 ID=Gchil2367.t1|Name=Gchil2367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=582bp|location=Sequence derived from alignment at tig00004400_pilon:173325..173906+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCCGCCGCTCGCGCGCCCCCGCTTCGCCCGGCCTTTGCCGCGCC
GTTCGCGCTGCGCGCGTGGCGCGCCCACCGCGTGGTGCAGTCCATTGTCG
TTCACGTCGTCCCCTTCCGCGTCGCCGTCACCACCATTcccccgcgacgc
ccgcccgccatggccgccgccaaccccgacgactccgcttccgtcgccgc
cgccgccgccgcgccgccctcctccgcgcagttcgccgccacgcaggacg
cccccgtcaccggctatgcgcccgccaccgAGTACGCCCTAGACTCGGAC
GCTCTCAAGGAGCGCGCCCTGCAGGTCGTGTCCGACGTCTCTCAACGCCC
ACTTTTCTACACCCAGATCTTGGCCTACTCGCTGGCCGCCCTCGTCGCCG
TCACCGTGTTGCGCGCCATTGTGGCCGCCGTCGACTCCATCCCGATCCTG
CCAGGCGCCCTCGAGCTCATCGGCCTCTCCTACACCGTCTGGTTCTTCTG
GAGGTACGTTCTCTTCAAGGAGAGCCGCCAGGAGCTGCTCGACGAGGTTG
AGGAGTTTTTGGGCAGAGCGCGTCCGCAGTAA
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