Gchil2659.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2659.t2
Unique NameGchil2659.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length127
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:2227579..2228079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121124.JNIX01000009_gene2709
PFAMsNDUFA12
Max annot lvl204458|Caulobacterales
Evalue2.59e-15
EggNOG OGsCOG3761@1|root,COG3761@2|Bacteria,1RHS3@1224|Proteobacteria,2U95G@28211|Alphaproteobacteria,2KGNZ@204458|Caulobacterales
DescriptionNADH ubiquinone oxidoreductase 17.2 kD subunit
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2659Gchil2659Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 2227579..2228129 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2659.t2Gchil2659.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 2227579..2228079 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2659.t2.stop1Gchil2659.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 2227579..2227581 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2659.t2.CDS1Gchil2659.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2227579..2227903 -
Gchil2659.t2.CDS2Gchil2659.t2.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2228024..2228079 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2659.t2.exon1Gchil2659.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2227579..2227903 -
Gchil2659.t2.exon2Gchil2659.t2.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2228024..2228079 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2659.t2.intron1Gchil2659.t2.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 2227904..2228023 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2659.t2.start1Gchil2659.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 2228077..2228079 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2659.t2 ID=Gchil2659.t2|Name=Gchil2659.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=127bp
MGHHSCHQIEQDGHNALLRKETYGRDRWVEYVDDRNPDSSKITSEWHAWL
HHIIDEPPTEKPLPKPIYQAEETGNPTGTRDAYVPPHHKLAKNSIGGASE
KYESWKPGSEPVRSDVGSGKDVYDLK*
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spliced messenger RNA

>Gchil2659.t2 ID=Gchil2659.t2|Name=Gchil2659.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=381bp|location=Sequence derived from alignment at tig00004400_pilon:2227579..2228079- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCACCATTCGTGCCATCAAATTGAACAAGATGGGCACAATGCATT
GCTACGGAAGGAGACTTATGGTCGCGATCGGTGGGTAGAATACGTTGATG
ATCGCAATCCGGATAGCTCAAAGATCACCTCCGAATGGCACGCGTGGTTG
CATCACATTATCGATGAGCCACCGACAGAAAAGCCGCTTCCTAAGCCCAT
TTATCAAGCCGAAGAGACTGGAAACCCAACGGGAACGCGCGATGCCTACG
TTCCCCCGCATCATAAGCTAGCGAAGAATTCTATTGGTGGGGCTTCCGAG
AAGTACGAATCCTGGAAGCCGGGATCTGAGCCAGTTCGTTCGGATGTAGG
GAGTGGAAAAGATGTGTATGACCTCAAGTAG
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protein sequence of Gchil2659.t2

>Gchil2659.t2 ID=Gchil2659.t2|Name=Gchil2659.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=127bp
MGHHSCHQIEQDGHNALLRKETYGRDRWVEYVDDRNPDSSKITSEWHAWL
HHIIDEPPTEKPLPKPIYQAEETGNPTGTRDAYVPPHHKLAKNSIGGASE
KYESWKPGSEPVRSDVGSGKDVYDLK*
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mRNA from alignment at tig00004400_pilon:2227579..2228079-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2659.t2 ID=Gchil2659.t2|Name=Gchil2659.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=501bp|location=Sequence derived from alignment at tig00004400_pilon:2227579..2228079- (Gracilaria chilensis NLEC103_M9 male)
ATGGGGCACCATTCGTGCCATCAAATTGAACAAGATGGGCACAATGCATT
GCTACGGTAAGTGCGCGCGCAATGTATGACTTATCGCAGCATTGCATCTC
GTAAGCGGGATACTGTATACTAACCATCTCGACTAGTCGGGGAGGACAAA
TTCAACAACCGGTTTTTCGAAAACAGGAAGGAGACTTATGGTCGCGATCG
GTGGGTAGAATACGTTGATGATCGCAATCCGGATAGCTCAAAGATCACCT
CCGAATGGCACGCGTGGTTGCATCACATTATCGATGAGCCACCGACAGAA
AAGCCGCTTCCTAAGCCCATTTATCAAGCCGAAGAGACTGGAAACCCAAC
GGGAACGCGCGATGCCTACGTTCCCCCGCATCATAAGCTAGCGAAGAATT
CTATTGGTGGGGCTTCCGAGAAGTACGAATCCTGGAAGCCGGGATCTGAG
CCAGTTCGTTCGGATGTAGGGAGTGGAAAAGATGTGTATGACCTCAAGTA
G
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Coding sequence (CDS) from alignment at tig00004400_pilon:2227579..2228079-

>Gchil2659.t2 ID=Gchil2659.t2|Name=Gchil2659.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=381bp|location=Sequence derived from alignment at tig00004400_pilon:2227579..2228079- (Gracilaria chilensis NLEC103_M9 male)
ATGGGGCACCATTCGTGCCATCAAATTGAACAAGATGGGCACAATGCATT
GCTACGGAAGGAGACTTATGGTCGCGATCGGTGGGTAGAATACGTTGATG
ATCGCAATCCGGATAGCTCAAAGATCACCTCCGAATGGCACGCGTGGTTG
CATCACATTATCGATGAGCCACCGACAGAAAAGCCGCTTCCTAAGCCCAT
TTATCAAGCCGAAGAGACTGGAAACCCAACGGGAACGCGCGATGCCTACG
TTCCCCCGCATCATAAGCTAGCGAAGAATTCTATTGGTGGGGCTTCCGAG
AAGTACGAATCCTGGAAGCCGGGATCTGAGCCAGTTCGTTCGGATGTAGG
GAGTGGAAAAGATGTGTATGACCTCAAGTAG
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