Gchil2659.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2659.t1
Unique NameGchil2659.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length157
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:2227579..2228129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR083CT
Preferred nameNDUFA12
PFAMsNDUFA12
Max annot lvl2759|Eukaryota
KEGG koko:K10742,ko:K11352,ko:K14012,ko:K18160
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko03030,ko04141,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map03030,map04141,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005829,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007585,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0010033,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042221,GO:0042773,GO:0042775,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0046872,GO:0046914,GO:0050136,GO:0050896,GO:0050897,GO:0055086,GO:0055114,GO:0065003,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
Evalue4.17e-25
EggNOG OGsKOG3382@1|root,KOG3382@2759|Eukaryota
EC3.6.4.12
DescriptionNADH dehydrogenase (quinone) activity
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko03029,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2659Gchil2659Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 2227579..2228129 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2659.t1Gchil2659.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 2227579..2228129 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2659.t1.stop1Gchil2659.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 2227579..2227581 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2659.t1.CDS1Gchil2659.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2227579..2227943 -
Gchil2659.t1.CDS2Gchil2659.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2228024..2228129 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2659.t1.exon1Gchil2659.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2227579..2227943 -
Gchil2659.t1.exon2Gchil2659.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2228024..2228129 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2659.t1.intron1Gchil2659.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 2227944..2228023 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2659.t1.start1Gchil2659.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 2228127..2228129 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2659.t1 ID=Gchil2659.t1|Name=Gchil2659.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=157bp
MSTVIKSFVTEARWRGLWGTIRAIKLNKMGTMHCYVGEDKFNNRFFENRK
ETYGRDRWVEYVDDRNPDSSKITSEWHAWLHHIIDEPPTEKPLPKPIYQA
EETGNPTGTRDAYVPPHHKLAKNSIGGASEKYESWKPGSEPVRSDVGSGK
DVYDLK*
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spliced messenger RNA

>Gchil2659.t1 ID=Gchil2659.t1|Name=Gchil2659.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=471bp|location=Sequence derived from alignment at tig00004400_pilon:2227579..2228129- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAACTGTCATTAAGTCTTTCGTCACCGAAGCGCGTTGGCGAGGACT
ATGGGGCACCATTCGTGCCATCAAATTGAACAAGATGGGCACAATGCATT
GCTACGTCGGGGAGGACAAATTCAACAACCGGTTTTTCGAAAACAGGAAG
GAGACTTATGGTCGCGATCGGTGGGTAGAATACGTTGATGATCGCAATCC
GGATAGCTCAAAGATCACCTCCGAATGGCACGCGTGGTTGCATCACATTA
TCGATGAGCCACCGACAGAAAAGCCGCTTCCTAAGCCCATTTATCAAGCC
GAAGAGACTGGAAACCCAACGGGAACGCGCGATGCCTACGTTCCCCCGCA
TCATAAGCTAGCGAAGAATTCTATTGGTGGGGCTTCCGAGAAGTACGAAT
CCTGGAAGCCGGGATCTGAGCCAGTTCGTTCGGATGTAGGGAGTGGAAAA
GATGTGTATGACCTCAAGTAG
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protein sequence of Gchil2659.t1

>Gchil2659.t1 ID=Gchil2659.t1|Name=Gchil2659.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=157bp
MSTVIKSFVTEARWRGLWGTIRAIKLNKMGTMHCYVGEDKFNNRFFENRK
ETYGRDRWVEYVDDRNPDSSKITSEWHAWLHHIIDEPPTEKPLPKPIYQA
EETGNPTGTRDAYVPPHHKLAKNSIGGASEKYESWKPGSEPVRSDVGSGK
DVYDLK*
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mRNA from alignment at tig00004400_pilon:2227579..2228129-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2659.t1 ID=Gchil2659.t1|Name=Gchil2659.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=551bp|location=Sequence derived from alignment at tig00004400_pilon:2227579..2228129- (Gracilaria chilensis NLEC103_M9 male)
ATGTCAACTGTCATTAAGTCTTTCGTCACCGAAGCGCGTTGGCGAGGACT
ATGGGGCACCATTCGTGCCATCAAATTGAACAAGATGGGCACAATGCATT
GCTACGGTAAGTGCGCGCGCAATGTATGACTTATCGCAGCATTGCATCTC
GTAAGCGGGATACTGTATACTAACCATCTCGACTAGTCGGGGAGGACAAA
TTCAACAACCGGTTTTTCGAAAACAGGAAGGAGACTTATGGTCGCGATCG
GTGGGTAGAATACGTTGATGATCGCAATCCGGATAGCTCAAAGATCACCT
CCGAATGGCACGCGTGGTTGCATCACATTATCGATGAGCCACCGACAGAA
AAGCCGCTTCCTAAGCCCATTTATCAAGCCGAAGAGACTGGAAACCCAAC
GGGAACGCGCGATGCCTACGTTCCCCCGCATCATAAGCTAGCGAAGAATT
CTATTGGTGGGGCTTCCGAGAAGTACGAATCCTGGAAGCCGGGATCTGAG
CCAGTTCGTTCGGATGTAGGGAGTGGAAAAGATGTGTATGACCTCAAGTA
G
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Coding sequence (CDS) from alignment at tig00004400_pilon:2227579..2228129-

>Gchil2659.t1 ID=Gchil2659.t1|Name=Gchil2659.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=471bp|location=Sequence derived from alignment at tig00004400_pilon:2227579..2228129- (Gracilaria chilensis NLEC103_M9 male)
ATGTCAACTGTCATTAAGTCTTTCGTCACCGAAGCGCGTTGGCGAGGACT
ATGGGGCACCATTCGTGCCATCAAATTGAACAAGATGGGCACAATGCATT
GCTACGTCGGGGAGGACAAATTCAACAACCGGTTTTTCGAAAACAGGAAG
GAGACTTATGGTCGCGATCGGTGGGTAGAATACGTTGATGATCGCAATCC
GGATAGCTCAAAGATCACCTCCGAATGGCACGCGTGGTTGCATCACATTA
TCGATGAGCCACCGACAGAAAAGCCGCTTCCTAAGCCCATTTATCAAGCC
GAAGAGACTGGAAACCCAACGGGAACGCGCGATGCCTACGTTCCCCCGCA
TCATAAGCTAGCGAAGAATTCTATTGGTGGGGCTTCCGAGAAGTACGAAT
CCTGGAAGCCGGGATCTGAGCCAGTTCGTTCGGATGTAGGGAGTGGAAAA
GATGTGTATGACCTCAAGTAG
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