Gchil2363.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2363.t1
Unique NameGchil2363.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length548
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:161303..162946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1283283.ATXA01000042_gene2226
PFAMsAAA
Max annot lvl201174|Actinobacteria
Evalue3.93e-20
EggNOG OGsCOG1222@1|root,COG1222@2|Bacteria,2I7KW@201174|Actinobacteria
DescriptionATPase family associated with various cellular activities (AAA)
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2363Gchil2363Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 161303..162946 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2363.t1.start1Gchil2363.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 161303..161305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2363.t1.CDS1Gchil2363.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 161303..162946 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2363.t1.exon1Gchil2363.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 161303..162946 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2363.t1.stop1Gchil2363.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 162944..162946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2363.t1Gchil2363.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 161303..162946 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2363.t1 ID=Gchil2363.t1|Name=Gchil2363.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=548bp
MEGAHATRRDDDDAAWIPSVHQDALEKLRRFVQQSDEYPKAAVVYGPAGS
GKSALCRRFAQQYAYQVDKITWRQLAGSTVGDVEQQILHTMRRCCARASG
ASAAARTVILVDELEIWATRSNASQWGLRVVAAFHDALQELREERTREVV
VLTTCCEVRDVHDALRRHGMLGCEIALGALRATERAAVCAKWAMWAHATE
ENVVEDTTTHVVSMTAGFMVAELVALLRRVGAARHGRHDMRHTVDTTRPG
TLAATTSLLRDTNLDGIRRACVAPTLIGVEGALKQVLDCVHSVGELARSN
AARRWSASSTRSARALRGVKGVRGVLVHGASGCGKSAVLRVAALRAMKLG
MHVLQVDVAAVLGAHVGASERRVRALFGAARVLAPCALVLEDVDSLAPAR
VDGDAGGGGGGGGGGGAAALHRVLSTLLVEMDGGDGGDDGDDGDDGDDGD
DGDGVVVLASARDARRVDAALLRPGRLDVRVALHAPCDAPTREHLFTHAC
RQRGVRVTATHVAHVASWHAPSAAHIVHLADRLAHAQRRRAAAAATC*
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spliced messenger RNA

>Gchil2363.t1 ID=Gchil2363.t1|Name=Gchil2363.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1644bp|location=Sequence derived from alignment at tig00004400_pilon:161303..162946+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGGCGCGCACGCCACACGCCGCGATGATGATGACGCGGCGTGGAT
ACCATCGGTGCACCAAGACGCGCTGGAAAAGCTGCGGCGCTTCGTGCAGC
AAAGCGACGAGTATCCCAAGGCGGCCGTGGTGTACGGGCCGGCGGGCAGC
GGCAAGAGCGCGTTATGTCGACGCTTCGCGCAGCAGTACGCGTACCAAGT
TGACAAGATCACATGGCGCCAACTAGCGGGTAGCACCGTTGGCGACGTGG
AGCAGCAAATACTACACACGATGCGACGCTGTTGCGCACGCGCCAGCGGC
GCCAGCGCTGCAGCGCGCACGGTAATCTTGGTGGACGAGTTGGAGATATG
GGCCACGCGCTCAAACGCGTCGCAATGGGGTCTACGCGTGGTAGCCGCGT
TTCACGACGCGCTACAAGAGCTGCGGGAGGAGCGCACGCGAGAGGTGGTG
GTGCTGACGACGTGTTGCGAGGTGCGCGACGTGCATGACGCACTGCGACG
ACACGGCATGTTGGGGTGCGAGATAGCGCTTGGGGCGCTACGCGCGACGG
AGCGCGCGGCTGTGTGCGCGAAGTGGGCCATGTGGGCGCACGCGACGGAG
GAAAACGTGGTGGAGGACACGACGACGCACGTGGTTTCAATGACGGCCGG
CTTCATGGTGGCCGAGCTGGTGGCGTTGTTACGGCGGGTGGGTGCGGCGA
GACACGGGCGACATGACATGCGTCACACGGTGGACACAACGCGCCCCGGC
ACGCTTGCCGCCACCACAAGTCTTCTCCGCGACACCAACTTGGACGGCAT
ACGACGCGCGTGCGTGGCGCCGACGCTCATCGGCGTAGAAGGCGCGCTCA
AACAAGTGCTGGACTGTGTGCACAGCGTGGGTGAGCTAGCGCGCAGCAAC
GCGGCACGACGATGGTCGGCATCATCGAcgcgcagcgcgcgcgcgctgcg
cggcgtgaagggcgtgcgcggcgtgcTGGTACACGGTGCGAGCGGGTGCG
GAAAGAGCGCTGTGTTGCGTGTGGCCGCGTTGCGCGCAATGAAGCTGGGT
ATGCACGTACTGCAAGTGGACGTGGCGGCGGTGTTGGGCGCGCATGTGGG
CGCTTCGGAACGTCGAGTGCGTGCTCTGTTTGGTGCGGCGCGCGTGCTGG
CGCCGTGCGCGCTGGTGCTGGAAGACGTGGACTCGCTCGCGCCCGCGCGC
GTCGATGGCGACGCTggcggcggcggcggcggcggcggcggcggtggggc
ggcCGCGCTGCACCGAGTGCTGAGCACGCTGCTGGTGGAGATGGACGGCG
GCGACGGCggcgacgatggcgacgatggcgacgatggcgacgatggcgac
gatggcgacgGCGTGGTGGTGCTCGCATCGGCGCGAGATGCGCGACGCGT
GGACGCAGCGCTGCTGCGCCCCGGGCGGCTCGACGTGCGCGTGGCGCTCC
ACGCGCCGTGTGACGCGCCCACACGTGAGCACTTGTTCACGCACGCGTGT
CGCCAGCGAGGCGTGCGTGTCACCGCCACACACGTGGCGCACGTCGCCAG
CTGGCACGCGCCCTCCGCCGCGCACATCGTGCATCTGGCCGATCGGCTCG
CGCACGCGCAGCGTCGTCGTGCCGCCGCAGCTGCCACATGTTGA
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protein sequence of Gchil2363.t1

>Gchil2363.t1 ID=Gchil2363.t1|Name=Gchil2363.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=548bp
MEGAHATRRDDDDAAWIPSVHQDALEKLRRFVQQSDEYPKAAVVYGPAGS
GKSALCRRFAQQYAYQVDKITWRQLAGSTVGDVEQQILHTMRRCCARASG
ASAAARTVILVDELEIWATRSNASQWGLRVVAAFHDALQELREERTREVV
VLTTCCEVRDVHDALRRHGMLGCEIALGALRATERAAVCAKWAMWAHATE
ENVVEDTTTHVVSMTAGFMVAELVALLRRVGAARHGRHDMRHTVDTTRPG
TLAATTSLLRDTNLDGIRRACVAPTLIGVEGALKQVLDCVHSVGELARSN
AARRWSASSTRSARALRGVKGVRGVLVHGASGCGKSAVLRVAALRAMKLG
MHVLQVDVAAVLGAHVGASERRVRALFGAARVLAPCALVLEDVDSLAPAR
VDGDAGGGGGGGGGGGAAALHRVLSTLLVEMDGGDGGDDGDDGDDGDDGD
DGDGVVVLASARDARRVDAALLRPGRLDVRVALHAPCDAPTREHLFTHAC
RQRGVRVTATHVAHVASWHAPSAAHIVHLADRLAHAQRRRAAAAATC*
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mRNA from alignment at tig00004400_pilon:161303..162946+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2363.t1 ID=Gchil2363.t1|Name=Gchil2363.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1644bp|location=Sequence derived from alignment at tig00004400_pilon:161303..162946+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGGCGCGCACGCCACACGCCGCGATGATGATGACGCGGCGTGGAT
ACCATCGGTGCACCAAGACGCGCTGGAAAAGCTGCGGCGCTTCGTGCAGC
AAAGCGACGAGTATCCCAAGGCGGCCGTGGTGTACGGGCCGGCGGGCAGC
GGCAAGAGCGCGTTATGTCGACGCTTCGCGCAGCAGTACGCGTACCAAGT
TGACAAGATCACATGGCGCCAACTAGCGGGTAGCACCGTTGGCGACGTGG
AGCAGCAAATACTACACACGATGCGACGCTGTTGCGCACGCGCCAGCGGC
GCCAGCGCTGCAGCGCGCACGGTAATCTTGGTGGACGAGTTGGAGATATG
GGCCACGCGCTCAAACGCGTCGCAATGGGGTCTACGCGTGGTAGCCGCGT
TTCACGACGCGCTACAAGAGCTGCGGGAGGAGCGCACGCGAGAGGTGGTG
GTGCTGACGACGTGTTGCGAGGTGCGCGACGTGCATGACGCACTGCGACG
ACACGGCATGTTGGGGTGCGAGATAGCGCTTGGGGCGCTACGCGCGACGG
AGCGCGCGGCTGTGTGCGCGAAGTGGGCCATGTGGGCGCACGCGACGGAG
GAAAACGTGGTGGAGGACACGACGACGCACGTGGTTTCAATGACGGCCGG
CTTCATGGTGGCCGAGCTGGTGGCGTTGTTACGGCGGGTGGGTGCGGCGA
GACACGGGCGACATGACATGCGTCACACGGTGGACACAACGCGCCCCGGC
ACGCTTGCCGCCACCACAAGTCTTCTCCGCGACACCAACTTGGACGGCAT
ACGACGCGCGTGCGTGGCGCCGACGCTCATCGGCGTAGAAGGCGCGCTCA
AACAAGTGCTGGACTGTGTGCACAGCGTGGGTGAGCTAGCGCGCAGCAAC
GCGGCACGACGATGGTCGGCATCATCGAcgcgcagcgcgcgcgcgctgcg
cggcgtgaagggcgtgcgcggcgtgcTGGTACACGGTGCGAGCGGGTGCG
GAAAGAGCGCTGTGTTGCGTGTGGCCGCGTTGCGCGCAATGAAGCTGGGT
ATGCACGTACTGCAAGTGGACGTGGCGGCGGTGTTGGGCGCGCATGTGGG
CGCTTCGGAACGTCGAGTGCGTGCTCTGTTTGGTGCGGCGCGCGTGCTGG
CGCCGTGCGCGCTGGTGCTGGAAGACGTGGACTCGCTCGCGCCCGCGCGC
GTCGATGGCGACGCTggcggcggcggcggcggcggcggcggcggtggggc
ggcCGCGCTGCACCGAGTGCTGAGCACGCTGCTGGTGGAGATGGACGGCG
GCGACGGCggcgacgatggcgacgatggcgacgatggcgacgatggcgac
gatggcgacgGCGTGGTGGTGCTCGCATCGGCGCGAGATGCGCGACGCGT
GGACGCAGCGCTGCTGCGCCCCGGGCGGCTCGACGTGCGCGTGGCGCTCC
ACGCGCCGTGTGACGCGCCCACACGTGAGCACTTGTTCACGCACGCGTGT
CGCCAGCGAGGCGTGCGTGTCACCGCCACACACGTGGCGCACGTCGCCAG
CTGGCACGCGCCCTCCGCCGCGCACATCGTGCATCTGGCCGATCGGCTCG
CGCACGCGCAGCGTCGTCGTGCCGCCGCAGCTGCCACATGTTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:161303..162946+

>Gchil2363.t1 ID=Gchil2363.t1|Name=Gchil2363.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1644bp|location=Sequence derived from alignment at tig00004400_pilon:161303..162946+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGGCGCGCACGCCACACGCCGCGATGATGATGACGCGGCGTGGAT
ACCATCGGTGCACCAAGACGCGCTGGAAAAGCTGCGGCGCTTCGTGCAGC
AAAGCGACGAGTATCCCAAGGCGGCCGTGGTGTACGGGCCGGCGGGCAGC
GGCAAGAGCGCGTTATGTCGACGCTTCGCGCAGCAGTACGCGTACCAAGT
TGACAAGATCACATGGCGCCAACTAGCGGGTAGCACCGTTGGCGACGTGG
AGCAGCAAATACTACACACGATGCGACGCTGTTGCGCACGCGCCAGCGGC
GCCAGCGCTGCAGCGCGCACGGTAATCTTGGTGGACGAGTTGGAGATATG
GGCCACGCGCTCAAACGCGTCGCAATGGGGTCTACGCGTGGTAGCCGCGT
TTCACGACGCGCTACAAGAGCTGCGGGAGGAGCGCACGCGAGAGGTGGTG
GTGCTGACGACGTGTTGCGAGGTGCGCGACGTGCATGACGCACTGCGACG
ACACGGCATGTTGGGGTGCGAGATAGCGCTTGGGGCGCTACGCGCGACGG
AGCGCGCGGCTGTGTGCGCGAAGTGGGCCATGTGGGCGCACGCGACGGAG
GAAAACGTGGTGGAGGACACGACGACGCACGTGGTTTCAATGACGGCCGG
CTTCATGGTGGCCGAGCTGGTGGCGTTGTTACGGCGGGTGGGTGCGGCGA
GACACGGGCGACATGACATGCGTCACACGGTGGACACAACGCGCCCCGGC
ACGCTTGCCGCCACCACAAGTCTTCTCCGCGACACCAACTTGGACGGCAT
ACGACGCGCGTGCGTGGCGCCGACGCTCATCGGCGTAGAAGGCGCGCTCA
AACAAGTGCTGGACTGTGTGCACAGCGTGGGTGAGCTAGCGCGCAGCAAC
GCGGCACGACGATGGTCGGCATCATCGAcgcgcagcgcgcgcgcgctgcg
cggcgtgaagggcgtgcgcggcgtgcTGGTACACGGTGCGAGCGGGTGCG
GAAAGAGCGCTGTGTTGCGTGTGGCCGCGTTGCGCGCAATGAAGCTGGGT
ATGCACGTACTGCAAGTGGACGTGGCGGCGGTGTTGGGCGCGCATGTGGG
CGCTTCGGAACGTCGAGTGCGTGCTCTGTTTGGTGCGGCGCGCGTGCTGG
CGCCGTGCGCGCTGGTGCTGGAAGACGTGGACTCGCTCGCGCCCGCGCGC
GTCGATGGCGACGCTggcggcggcggcggcggcggcggcggcggtggggc
ggcCGCGCTGCACCGAGTGCTGAGCACGCTGCTGGTGGAGATGGACGGCG
GCGACGGCggcgacgatggcgacgatggcgacgatggcgacgatggcgac
gatggcgacgGCGTGGTGGTGCTCGCATCGGCGCGAGATGCGCGACGCGT
GGACGCAGCGCTGCTGCGCCCCGGGCGGCTCGACGTGCGCGTGGCGCTCC
ACGCGCCGTGTGACGCGCCCACACGTGAGCACTTGTTCACGCACGCGTGT
CGCCAGCGAGGCGTGCGTGTCACCGCCACACACGTGGCGCACGTCGCCAG
CTGGCACGCGCCCTCCGCCGCGCACATCGTGCATCTGGCCGATCGGCTCG
CGCACGCGCAGCGTCGTCGTGCCGCCGCAGCTGCCACATGTTGA
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