Gchil2597.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2597.t1
Unique NameGchil2597.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length456
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1756565..1757932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4432.XP_010258496.1
PFAMsPCI
Max annot lvl35493|Streptophyta
KEGG koko:K03036
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
GOsGO:0000502,GO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005838,GO:0005911,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0008541,GO:0009056,GO:0009057,GO:0009506,GO:0009987,GO:0010035,GO:0010038,GO:0016043,GO:0019538,GO:0019941,GO:0022607,GO:0022624,GO:0030054,GO:0030154,GO:0030163,GO:0032502,GO:0032991,GO:0034622,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043248,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046686,GO:0048863,GO:0048869,GO:0050896,GO:0051603,GO:0055044,GO:0065003,GO:0071704,GO:0071840,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369
Evalue2.18e-151
EggNOG OGsCOG5159@1|root,KOG1463@2759|Eukaryota,37NJZ@33090|Viridiplantae,3G8WQ@35493|Streptophyta
Description26S proteasome non-ATPase regulatory subunit
COG categoryO
BRITEko00000,ko00001,ko00002,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2597Gchil2597Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1756565..1757932 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2597.t1.start1Gchil2597.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1756565..1756567 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2597.t1.CDS1Gchil2597.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1756565..1757932 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2597.t1.exon1Gchil2597.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1756565..1757932 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2597.t1.stop1Gchil2597.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1757930..1757932 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2597.t1Gchil2597.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1756565..1757932 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2597.t1 ID=Gchil2597.t1|Name=Gchil2597.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=456bp
MPESTAVASAPPPAKPPQPHDADIAMADATDDGPLAQLMATAQACSDPAQ
ARATYRKVIDFDTSSIHHSDTANEDIAKIKETAILKLADLLVASGNANKL
SELLKSLRPFFSTIAKAKTAKIVRGLLDSVSKANDAAELQVNLCKETIQW
CREEKRTFLRQRVEGRLAALYLDNSRYNDALKIINELLREVKRLDDKAHL
LEIQLTESRIHHALRNIPKARAALTSARTTANAIYVPLTLQAQIDMQAGI
IAAEEKDYKTAYSYFYEGFEGYMSLEDPKAVSNLKYMLLCKIMTGNAEDV
PGIVNGSVALKYSGREVDAMLAVAKAHSERSLESFEKTLKQYKPELSDDP
IVQAHLSSLYDTLKEQNLLRLIEPFSRVEIQHVAKLINLDLNDVESKLSQ
MILDKKLNGILDQGAGCLVVYDDLPISKTYQCSLDTMANMDNVVNSLFDK
ASTLR*
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spliced messenger RNA

>Gchil2597.t1 ID=Gchil2597.t1|Name=Gchil2597.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1368bp|location=Sequence derived from alignment at tig00004400_pilon:1756565..1757932+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGAGTCCACAGCAGTCGCTTCCGCCCCACCACCAGCAAAGCCTCC
CCAACCGCATGACGCAGACATCGCTATGGCTGATGCTACAGATGACGGTC
CACTCGCTCAGCTCATGGCTACCGCCCAAGCGTGCTCCGATCCCGCGCAA
GCCCGGGCCACGTATAGAAAGGTCATTGATTTCGACACGTCCTCCATCCA
CCATTCCGACACAGCAAATGAGGACATCGCTAAGATAAAGGAAACCGCCA
TTCTGAAACTCGCCGATCTGCTCGTCGCATCTGGAAATGCCAACAAGCTT
TCTGAGCTTCTCAAGTCGCTGCGTCCGTTCTTTTCAACCATCGCCAAGGC
CAAAACAGCCAAGATCGTCCGTGGTTTGCTTGACTCTGTTTCAAAGGCCA
ACGATGCAGCCGAGTTGCAGGTCAACCTTTGTAAGGAAACCATCCAATGG
TGCCGCGAGGAGAAGAGGACTTTTCTGCGCCAACGTGTGGAAGGTAGACT
TGCTGCCCTGTACCTGGACAATTCCCGTTACAATGATGCTTTGAAGATCA
TCAACGAGCTCTTGCGTGAAGTGAAGCGTTTGGACGACAAGGCTCACTTA
CTCGAAATTCAGCTCACAGAATCTCGCATTCATCATGCTTTGCGAAACAT
TCCCAAAGCACGCGCCGCCCTCACCTCCGCACGCACCACCGCCAATGCCA
TATATGTCCCGCTAACGCTGCAGGCTCAAATTGATATGCAGGCTGGAATC
ATCGCTGCCGAGGAAAAGGACTACAAGACGGCTTATTCGTACTTTTATGA
GGGCTTTGAAGGCTATATGAGCCTCGAGGATCCGAAAGCTGTCAGCAACT
TAAAATACATGCTGCTGTGCAAGATCATGACGGGCAATGCGGAAGACGTG
CCGGGCATCGTAAACGGGAGCGTTGCGCTCAAGTATTCCGGTCGAGAGGT
TGATGCCATGCTAGCTGTTGCGAAGGCCCATTCCGAGAGAAGTCTAGAGT
CTTTCGAAAAGACTCTGAAACAATATAAGCCGGAATTGTCAGATGATCCT
ATTGTTCAAGCCCACCTTAGTTCGTTGTATGACACTCTAAAGGAGCAAAA
CCTTCTGCGGTTGATTGAGCCGTTTTCACGGGTTGAGATTCAGCATGTGG
CCAAGTTGATCAACTTGGACTTGAACGATGTCGAGTCAAAGCTATCCCAG
ATGATACTGGACAAGAAGCTAAATGGGATTTTAGATCAGGGCGCAGGGTG
TTTGGTTGTGTATGATGATCTTCCGATATCAAAGACGTATCAATGTAGTC
TGGATACAATGGCTAACATGGACAATGTGGTCAACTCACTTTTTGACAAA
GCATCGACATTAAGATAA
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protein sequence of Gchil2597.t1

>Gchil2597.t1 ID=Gchil2597.t1|Name=Gchil2597.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=456bp
MPESTAVASAPPPAKPPQPHDADIAMADATDDGPLAQLMATAQACSDPAQ
ARATYRKVIDFDTSSIHHSDTANEDIAKIKETAILKLADLLVASGNANKL
SELLKSLRPFFSTIAKAKTAKIVRGLLDSVSKANDAAELQVNLCKETIQW
CREEKRTFLRQRVEGRLAALYLDNSRYNDALKIINELLREVKRLDDKAHL
LEIQLTESRIHHALRNIPKARAALTSARTTANAIYVPLTLQAQIDMQAGI
IAAEEKDYKTAYSYFYEGFEGYMSLEDPKAVSNLKYMLLCKIMTGNAEDV
PGIVNGSVALKYSGREVDAMLAVAKAHSERSLESFEKTLKQYKPELSDDP
IVQAHLSSLYDTLKEQNLLRLIEPFSRVEIQHVAKLINLDLNDVESKLSQ
MILDKKLNGILDQGAGCLVVYDDLPISKTYQCSLDTMANMDNVVNSLFDK
ASTLR*
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mRNA from alignment at tig00004400_pilon:1756565..1757932+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2597.t1 ID=Gchil2597.t1|Name=Gchil2597.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1368bp|location=Sequence derived from alignment at tig00004400_pilon:1756565..1757932+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGGAGTCCACAGCAGTCGCTTCCGCCCCACCACCAGCAAAGCCTCC
CCAACCGCATGACGCAGACATCGCTATGGCTGATGCTACAGATGACGGTC
CACTCGCTCAGCTCATGGCTACCGCCCAAGCGTGCTCCGATCCCGCGCAA
GCCCGGGCCACGTATAGAAAGGTCATTGATTTCGACACGTCCTCCATCCA
CCATTCCGACACAGCAAATGAGGACATCGCTAAGATAAAGGAAACCGCCA
TTCTGAAACTCGCCGATCTGCTCGTCGCATCTGGAAATGCCAACAAGCTT
TCTGAGCTTCTCAAGTCGCTGCGTCCGTTCTTTTCAACCATCGCCAAGGC
CAAAACAGCCAAGATCGTCCGTGGTTTGCTTGACTCTGTTTCAAAGGCCA
ACGATGCAGCCGAGTTGCAGGTCAACCTTTGTAAGGAAACCATCCAATGG
TGCCGCGAGGAGAAGAGGACTTTTCTGCGCCAACGTGTGGAAGGTAGACT
TGCTGCCCTGTACCTGGACAATTCCCGTTACAATGATGCTTTGAAGATCA
TCAACGAGCTCTTGCGTGAAGTGAAGCGTTTGGACGACAAGGCTCACTTA
CTCGAAATTCAGCTCACAGAATCTCGCATTCATCATGCTTTGCGAAACAT
TCCCAAAGCACGCGCCGCCCTCACCTCCGCACGCACCACCGCCAATGCCA
TATATGTCCCGCTAACGCTGCAGGCTCAAATTGATATGCAGGCTGGAATC
ATCGCTGCCGAGGAAAAGGACTACAAGACGGCTTATTCGTACTTTTATGA
GGGCTTTGAAGGCTATATGAGCCTCGAGGATCCGAAAGCTGTCAGCAACT
TAAAATACATGCTGCTGTGCAAGATCATGACGGGCAATGCGGAAGACGTG
CCGGGCATCGTAAACGGGAGCGTTGCGCTCAAGTATTCCGGTCGAGAGGT
TGATGCCATGCTAGCTGTTGCGAAGGCCCATTCCGAGAGAAGTCTAGAGT
CTTTCGAAAAGACTCTGAAACAATATAAGCCGGAATTGTCAGATGATCCT
ATTGTTCAAGCCCACCTTAGTTCGTTGTATGACACTCTAAAGGAGCAAAA
CCTTCTGCGGTTGATTGAGCCGTTTTCACGGGTTGAGATTCAGCATGTGG
CCAAGTTGATCAACTTGGACTTGAACGATGTCGAGTCAAAGCTATCCCAG
ATGATACTGGACAAGAAGCTAAATGGGATTTTAGATCAGGGCGCAGGGTG
TTTGGTTGTGTATGATGATCTTCCGATATCAAAGACGTATCAATGTAGTC
TGGATACAATGGCTAACATGGACAATGTGGTCAACTCACTTTTTGACAAA
GCATCGACATTAAGATAA
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Coding sequence (CDS) from alignment at tig00004400_pilon:1756565..1757932+

>Gchil2597.t1 ID=Gchil2597.t1|Name=Gchil2597.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1368bp|location=Sequence derived from alignment at tig00004400_pilon:1756565..1757932+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGGAGTCCACAGCAGTCGCTTCCGCCCCACCACCAGCAAAGCCTCC
CCAACCGCATGACGCAGACATCGCTATGGCTGATGCTACAGATGACGGTC
CACTCGCTCAGCTCATGGCTACCGCCCAAGCGTGCTCCGATCCCGCGCAA
GCCCGGGCCACGTATAGAAAGGTCATTGATTTCGACACGTCCTCCATCCA
CCATTCCGACACAGCAAATGAGGACATCGCTAAGATAAAGGAAACCGCCA
TTCTGAAACTCGCCGATCTGCTCGTCGCATCTGGAAATGCCAACAAGCTT
TCTGAGCTTCTCAAGTCGCTGCGTCCGTTCTTTTCAACCATCGCCAAGGC
CAAAACAGCCAAGATCGTCCGTGGTTTGCTTGACTCTGTTTCAAAGGCCA
ACGATGCAGCCGAGTTGCAGGTCAACCTTTGTAAGGAAACCATCCAATGG
TGCCGCGAGGAGAAGAGGACTTTTCTGCGCCAACGTGTGGAAGGTAGACT
TGCTGCCCTGTACCTGGACAATTCCCGTTACAATGATGCTTTGAAGATCA
TCAACGAGCTCTTGCGTGAAGTGAAGCGTTTGGACGACAAGGCTCACTTA
CTCGAAATTCAGCTCACAGAATCTCGCATTCATCATGCTTTGCGAAACAT
TCCCAAAGCACGCGCCGCCCTCACCTCCGCACGCACCACCGCCAATGCCA
TATATGTCCCGCTAACGCTGCAGGCTCAAATTGATATGCAGGCTGGAATC
ATCGCTGCCGAGGAAAAGGACTACAAGACGGCTTATTCGTACTTTTATGA
GGGCTTTGAAGGCTATATGAGCCTCGAGGATCCGAAAGCTGTCAGCAACT
TAAAATACATGCTGCTGTGCAAGATCATGACGGGCAATGCGGAAGACGTG
CCGGGCATCGTAAACGGGAGCGTTGCGCTCAAGTATTCCGGTCGAGAGGT
TGATGCCATGCTAGCTGTTGCGAAGGCCCATTCCGAGAGAAGTCTAGAGT
CTTTCGAAAAGACTCTGAAACAATATAAGCCGGAATTGTCAGATGATCCT
ATTGTTCAAGCCCACCTTAGTTCGTTGTATGACACTCTAAAGGAGCAAAA
CCTTCTGCGGTTGATTGAGCCGTTTTCACGGGTTGAGATTCAGCATGTGG
CCAAGTTGATCAACTTGGACTTGAACGATGTCGAGTCAAAGCTATCCCAG
ATGATACTGGACAAGAAGCTAAATGGGATTTTAGATCAGGGCGCAGGGTG
TTTGGTTGTGTATGATGATCTTCCGATATCAAAGACGTATCAATGTAGTC
TGGATACAATGGCTAACATGGACAATGTGGTCAACTCACTTTTTGACAAA
GCATCGACATTAAGATAA
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