Gchil2670.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil2670.t1
Unique Name	Gchil2670.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	471

Homology

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BLAST of Gchil2670.t1 vs. uniprot
Match: A0A2V3J237_9FLOR (SWI/SNF chromatin-remodeling complex subunit snf22 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J237_9FLOR)

HSP 1 Score: 290 bits (741), Expect = 5.310e-90
Identity = 297/471 (63.06%), Postives = 332/471 (70.49%), Query Frame = 0

Query:    1 MILHAFVTAALLAFASAHCIYTDTECVCTQAQAGRTCLRYYSGSGASTKCETYECGSGFVCDCAGFEMCDITDCSLMRTVYRPIGAAPSAFGAIVDCELATQVTCVTPRNELAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTPSSAVVVPLGGVCTPTDTCEAGTACSCTGFCSTIISIEIEALADDGVVPMMCGTELGPPTPDNIVEGSYTYNGVCDDLYYRVSNSGGIWEALITAVRDVNTNTWYPSVLPPDSGITAIVTKNPPNTDFFTDPAYDFSGWTPALQHTETIATYAEYIAFQNDHGGI-IWTFDNFRHPRGDEGFTYYRVILPFC 470
            M+L A +TAA   FA   CIY+DTEC C QAQAGRTCLRY+SGSGAST+CETYECG+GFVCDCAG EMCD+TDCSLMRTVYRP+G      G IVDC++ATQVTCVTPRN   P          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                     A  VPLGG CTPT TC  GT+CSCTGFC+T ++I+I+A  DD VVP++CGT LG  T      G++ Y G C+D+Y  VSNS G    +  ++ D  TNT Y + +   S +T  V  NPPN DFFTDPAYDFS W+P +  T+ I   + YI F N+ GG  +WT  +     GD G  YYRV LPFC
Sbjct:    1 MMLKAILTAAFFTFAFGQCIYSDTECQCVQAQAGRTCLRYFSGSGASTQCETYECGTGFVCDCAGTEMCDVTDCSLMRTVYRPVGTTTLTVGQIVDCQMATQVTCVTPRNAAVPSASASPSASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------AAFVPLGGACTPTSTCATGTSCSCTGFCATNVNIQIDAQGDDTVVPVVCGTNLGAVTTGFGDAGTWFYTGACNDVYLLVSNSRGGHTGVAASIVDQTTNTQYITRVD-GSDLTGTVLDNPPNLDFFTDPAYDFSIWSPVVLQTKLIND-SPYINFANNFGGATVWTHTDGHLGAGDLGSAYYRVQLPFC 432

The following BLAST results are available for this feature:

BLAST of Gchil2670.t1 vs. uniprot

BLAST of Gchil2670.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J237_9FLOR	5.310e-90	63.06	SWI/SNF chromatin-remodeling complex subunit snf22...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..276
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..256
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 20..470
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..14
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..19
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..19

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:2318497..2320001 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2670.t1	Gchil2670.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00004400_pilon 2318497..2320001 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil2670.t1 ID=Gchil2670.t1|Name=Gchil2670.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=471bp
MILHAFVTAALLAFASAHCIYTDTECVCTQAQAGRTCLRYYSGSGASTKC
ETYECGSGFVCDCAGFEMCDITDCSLMRTVYRPIGAAPSAFGAIVDCELA
TQVTCVTPRNELAPTPSSSSSPAPSMSSSPGPSSSSSPAPSSSSSPAPSM
SSSPAPSMSSSPAPSMSSSPAPSSSSSPVPSSSSSPIPSASSSPAASASS
SPAPSLSSSPAPSLSSSPAPSLSSSPVPSASSSPAPSASASPSASASATP
SASASPTPSNSPAPSPSASSSATPSVSPTPSSAVVVPLGGVCTPTDTCEA
GTACSCTGFCSTIISIEIEALADDGVVPMMCGTELGPPTPDNIVEGSYTY
NGVCDDLYYRVSNSGGIWEALITAVRDVNTNTWYPSVLPPDSGITAIVTK
NPPNTDFFTDPAYDFSGWTPALQHTETIATYAEYIAFQNDHGGIIWTFDN
FRHPRGDEGFTYYRVILPFC*