Gchil2670.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2670.t1
Unique NameGchil2670.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length471
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:2318497..2320001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2670Gchil2670Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 2318497..2320001 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2670.t1Gchil2670.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 2318497..2320001 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2670.t1.start1Gchil2670.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 2318497..2318499 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2670.t1.CDS1Gchil2670.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2318497..2318683 +
Gchil2670.t1.CDS2Gchil2670.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2318776..2320001 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2670.t1.exon1Gchil2670.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2318497..2318683 +
Gchil2670.t1.exon2Gchil2670.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2318776..2320001 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2670.t1.intron1Gchil2670.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 2318684..2318775 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2670.t1.stop1Gchil2670.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 2319999..2320001 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2670.t1 ID=Gchil2670.t1|Name=Gchil2670.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=471bp
MILHAFVTAALLAFASAHCIYTDTECVCTQAQAGRTCLRYYSGSGASTKC
ETYECGSGFVCDCAGFEMCDITDCSLMRTVYRPIGAAPSAFGAIVDCELA
TQVTCVTPRNELAPTPSSSSSPAPSMSSSPGPSSSSSPAPSSSSSPAPSM
SSSPAPSMSSSPAPSMSSSPAPSSSSSPVPSSSSSPIPSASSSPAASASS
SPAPSLSSSPAPSLSSSPAPSLSSSPVPSASSSPAPSASASPSASASATP
SASASPTPSNSPAPSPSASSSATPSVSPTPSSAVVVPLGGVCTPTDTCEA
GTACSCTGFCSTIISIEIEALADDGVVPMMCGTELGPPTPDNIVEGSYTY
NGVCDDLYYRVSNSGGIWEALITAVRDVNTNTWYPSVLPPDSGITAIVTK
NPPNTDFFTDPAYDFSGWTPALQHTETIATYAEYIAFQNDHGGIIWTFDN
FRHPRGDEGFTYYRVILPFC*
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spliced messenger RNA

>Gchil2670.t1 ID=Gchil2670.t1|Name=Gchil2670.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00004400_pilon:2318497..2320001+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCTTCACGCCTTCGTCACCGCCGCGCTGTTGGCCTTTGCCTCCGC
CCATTGCATCTACACTGACACCGAATGCGTCTGCACCCAAGCGCAGGCCG
GCCGAACCTGCCTTCGCTACTACAGCGGCTCCGGGGCCTCCACCAAGTGC
GAGACCTATGAATGCGGCTCTGGTTTCGTTTGTGATTGTGCCGGATTTGA
AATGTGCGATATTACTGATTGCAGCCTCATGCGTACCGTGTATCGCCCCA
TCGGCGCTGCCCCGTCTGCGTTTGGTGCGATTGTTGACTGCGAGCTAGCC
ACCCAGGTGACCTGTGTCACTCCCCGCAACGAGTTGGCTCCCACTCCCAG
CTCGTCCTCTTCACCGGCACCGTCGATGTCGTCATCCCCAGGCCCGTCTT
CATCCTCCTCGCCGGCACCATCTTCTTCTTCTTCGCCGGCACCGTCGATG
TCTTCGTCCCCAGCACCTTCGATGTCTTCGTCCCCAGCACCTTCGATGTC
TTCCTCCCCGGCACCGTCTTCGTCTTCATCACCTGTGCCATCGTCCTCTT
CTTCGCCGATACCTTCAGCGTCTTCATCGCCGGCAGCTTCAGCGTCCTCC
TCGCCGGCTCCTTCGTTGTCCTCCTCGCCGGCTCCTTCGCTGTCCTCCTC
GCCGGCTCCTTCGCTGTCCTCCTCGCCGGTGCCTTCGGCTTCCTCCTCCC
CGGCTCCATCCGCATCCGCATCTCCGTCTGCGAGCGCGTCAGCCACGCCC
TCCGCCTCGGCTTCGCCCACCCCATCCAACTCTCCGGCGCCTTCACCTTC
CGCGTCTTCATCGGCCACGCCGTCGGTCTCTCCCACCCCGTCCAGCGCTG
TTGTCGTTCCCCTCGGAGGCGTGTGTACTCCCACGGATACATGCGAAGCT
GGAACGGCGTGCTCTTGCACTGGATTCTGCTCCACCATCATCTCCATTGA
GATTGAGGCGCTTGCAGATGATGGTGTCGTGCCGATGATGTGCGGAACGG
AACTTGGTCCGCCCACTCCTGATAATATTGTTGAAGGAAGCTACACGTAC
AACGGCGTTTGCGATGACCTGTACTACCGCGTATCGAACTCTGGTGGCAT
CTGGGAGGCCTTGATTACCGCCGTTCGCGATGTGAACACCAACACATGGT
ATCCTTCCGTCCTGCCACCAGACTCTGGTATCACCGCCATTGTGACGAAG
AATCCGCCCAACACTGACTTCTTCACCGATCCTGCGTACGACTTCAGCGG
TTGGACCCCGGCGCTGCAGCACACTGAGACCATCGCCACGTATGCGGAAT
ACATTGCATTCCAAAATGACCATGGGGGCATCATCTGGACTTTTGATAAC
TTTCGGCATCCGCGGGGTGACGAAGGTTTCACGTACTACAGGGTCATTCT
TCCCTTCTGCTAA
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protein sequence of Gchil2670.t1

>Gchil2670.t1 ID=Gchil2670.t1|Name=Gchil2670.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=471bp
MILHAFVTAALLAFASAHCIYTDTECVCTQAQAGRTCLRYYSGSGASTKC
ETYECGSGFVCDCAGFEMCDITDCSLMRTVYRPIGAAPSAFGAIVDCELA
TQVTCVTPRNELAPTPSSSSSPAPSMSSSPGPSSSSSPAPSSSSSPAPSM
SSSPAPSMSSSPAPSMSSSPAPSSSSSPVPSSSSSPIPSASSSPAASASS
SPAPSLSSSPAPSLSSSPAPSLSSSPVPSASSSPAPSASASPSASASATP
SASASPTPSNSPAPSPSASSSATPSVSPTPSSAVVVPLGGVCTPTDTCEA
GTACSCTGFCSTIISIEIEALADDGVVPMMCGTELGPPTPDNIVEGSYTY
NGVCDDLYYRVSNSGGIWEALITAVRDVNTNTWYPSVLPPDSGITAIVTK
NPPNTDFFTDPAYDFSGWTPALQHTETIATYAEYIAFQNDHGGIIWTFDN
FRHPRGDEGFTYYRVILPFC*
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mRNA from alignment at tig00004400_pilon:2318497..2320001+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2670.t1 ID=Gchil2670.t1|Name=Gchil2670.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1505bp|location=Sequence derived from alignment at tig00004400_pilon:2318497..2320001+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTCTTCACGCCTTCGTCACCGCCGCGCTGTTGGCCTTTGCCTCCGC
CCATTGCATCTACACTGACACCGAATGCGTCTGCACCCAAGCGCAGGCCG
GCCGAACCTGCCTTCGCTACTACAGCGGCTCCGGGGCCTCCACCAAGTGC
GAGACCTATGAATGCGGCTCTGGTTTCGTTTGTGATTGTACGTCCGCACG
AGCCCGTTTCATCCCCCTCCCTTAGCTTCATCACCACTAACATCGTCTAA
CTTTTGTGCCCTTTTGCAACCCACCCCAGGTGCCGGATTTGAAATGTGCG
ATATTACTGATTGCAGCCTCATGCGTACCGTGTATCGCCCCATCGGCGCT
GCCCCGTCTGCGTTTGGTGCGATTGTTGACTGCGAGCTAGCCACCCAGGT
GACCTGTGTCACTCCCCGCAACGAGTTGGCTCCCACTCCCAGCTCGTCCT
CTTCACCGGCACCGTCGATGTCGTCATCCCCAGGCCCGTCTTCATCCTCC
TCGCCGGCACCATCTTCTTCTTCTTCGCCGGCACCGTCGATGTCTTCGTC
CCCAGCACCTTCGATGTCTTCGTCCCCAGCACCTTCGATGTCTTCCTCCC
CGGCACCGTCTTCGTCTTCATCACCTGTGCCATCGTCCTCTTCTTCGCCG
ATACCTTCAGCGTCTTCATCGCCGGCAGCTTCAGCGTCCTCCTCGCCGGC
TCCTTCGTTGTCCTCCTCGCCGGCTCCTTCGCTGTCCTCCTCGCCGGCTC
CTTCGCTGTCCTCCTCGCCGGTGCCTTCGGCTTCCTCCTCCCCGGCTCCA
TCCGCATCCGCATCTCCGTCTGCGAGCGCGTCAGCCACGCCCTCCGCCTC
GGCTTCGCCCACCCCATCCAACTCTCCGGCGCCTTCACCTTCCGCGTCTT
CATCGGCCACGCCGTCGGTCTCTCCCACCCCGTCCAGCGCTGTTGTCGTT
CCCCTCGGAGGCGTGTGTACTCCCACGGATACATGCGAAGCTGGAACGGC
GTGCTCTTGCACTGGATTCTGCTCCACCATCATCTCCATTGAGATTGAGG
CGCTTGCAGATGATGGTGTCGTGCCGATGATGTGCGGAACGGAACTTGGT
CCGCCCACTCCTGATAATATTGTTGAAGGAAGCTACACGTACAACGGCGT
TTGCGATGACCTGTACTACCGCGTATCGAACTCTGGTGGCATCTGGGAGG
CCTTGATTACCGCCGTTCGCGATGTGAACACCAACACATGGTATCCTTCC
GTCCTGCCACCAGACTCTGGTATCACCGCCATTGTGACGAAGAATCCGCC
CAACACTGACTTCTTCACCGATCCTGCGTACGACTTCAGCGGTTGGACCC
CGGCGCTGCAGCACACTGAGACCATCGCCACGTATGCGGAATACATTGCA
TTCCAAAATGACCATGGGGGCATCATCTGGACTTTTGATAACTTTCGGCA
TCCGCGGGGTGACGAAGGTTTCACGTACTACAGGGTCATTCTTCCCTTCT
GCTAA
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Coding sequence (CDS) from alignment at tig00004400_pilon:2318497..2320001+

>Gchil2670.t1 ID=Gchil2670.t1|Name=Gchil2670.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1413bp|location=Sequence derived from alignment at tig00004400_pilon:2318497..2320001+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTCTTCACGCCTTCGTCACCGCCGCGCTGTTGGCCTTTGCCTCCGC
CCATTGCATCTACACTGACACCGAATGCGTCTGCACCCAAGCGCAGGCCG
GCCGAACCTGCCTTCGCTACTACAGCGGCTCCGGGGCCTCCACCAAGTGC
GAGACCTATGAATGCGGCTCTGGTTTCGTTTGTGATTGTGCCGGATTTGA
AATGTGCGATATTACTGATTGCAGCCTCATGCGTACCGTGTATCGCCCCA
TCGGCGCTGCCCCGTCTGCGTTTGGTGCGATTGTTGACTGCGAGCTAGCC
ACCCAGGTGACCTGTGTCACTCCCCGCAACGAGTTGGCTCCCACTCCCAG
CTCGTCCTCTTCACCGGCACCGTCGATGTCGTCATCCCCAGGCCCGTCTT
CATCCTCCTCGCCGGCACCATCTTCTTCTTCTTCGCCGGCACCGTCGATG
TCTTCGTCCCCAGCACCTTCGATGTCTTCGTCCCCAGCACCTTCGATGTC
TTCCTCCCCGGCACCGTCTTCGTCTTCATCACCTGTGCCATCGTCCTCTT
CTTCGCCGATACCTTCAGCGTCTTCATCGCCGGCAGCTTCAGCGTCCTCC
TCGCCGGCTCCTTCGTTGTCCTCCTCGCCGGCTCCTTCGCTGTCCTCCTC
GCCGGCTCCTTCGCTGTCCTCCTCGCCGGTGCCTTCGGCTTCCTCCTCCC
CGGCTCCATCCGCATCCGCATCTCCGTCTGCGAGCGCGTCAGCCACGCCC
TCCGCCTCGGCTTCGCCCACCCCATCCAACTCTCCGGCGCCTTCACCTTC
CGCGTCTTCATCGGCCACGCCGTCGGTCTCTCCCACCCCGTCCAGCGCTG
TTGTCGTTCCCCTCGGAGGCGTGTGTACTCCCACGGATACATGCGAAGCT
GGAACGGCGTGCTCTTGCACTGGATTCTGCTCCACCATCATCTCCATTGA
GATTGAGGCGCTTGCAGATGATGGTGTCGTGCCGATGATGTGCGGAACGG
AACTTGGTCCGCCCACTCCTGATAATATTGTTGAAGGAAGCTACACGTAC
AACGGCGTTTGCGATGACCTGTACTACCGCGTATCGAACTCTGGTGGCAT
CTGGGAGGCCTTGATTACCGCCGTTCGCGATGTGAACACCAACACATGGT
ATCCTTCCGTCCTGCCACCAGACTCTGGTATCACCGCCATTGTGACGAAG
AATCCGCCCAACACTGACTTCTTCACCGATCCTGCGTACGACTTCAGCGG
TTGGACCCCGGCGCTGCAGCACACTGAGACCATCGCCACGTATGCGGAAT
ACATTGCATTCCAAAATGACCATGGGGGCATCATCTGGACTTTTGATAAC
TTTCGGCATCCGCGGGGTGACGAAGGTTTCACGTACTACAGGGTCATTCT
TCCCTTCTGCTAA
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