Gchil2583.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2583.t1
Unique NameGchil2583.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length276
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1695292..1696119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog400682.PAC_15722466
PFAMsDEP,DUF547,Glutaredoxin
Max annot lvl33208|Metazoa
Evalue6.79e-53
EggNOG OGs28JT7@1|root,2QS72@2759|Eukaryota,38H0G@33154|Opisthokonta,3BGN4@33208|Metazoa
DescriptionProtein of unknown function, DUF547
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2583Gchil2583Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1695292..1696119 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2583.t1.start1Gchil2583.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1695292..1695294 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2583.t1.CDS1Gchil2583.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1695292..1696119 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2583.t1.exon1Gchil2583.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1695292..1696119 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2583.t1.stop1Gchil2583.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1696117..1696119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2583.t1Gchil2583.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1695292..1696119 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2583.t1 ID=Gchil2583.t1|Name=Gchil2583.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=276bp
MWDARGIGPRVMLRTAEELSQRILKLYASVVDVASNHVRYNALRSSPHFQ
QYLAAACKLRYFNPALLPESHRKAFFLNVYNSLIIHALAVMSPPRTKFER
ISLFNTAAYNIGGRVYSLNMIEHGILRANHPGAGPFALRVFAHNDPRLQC
ALSRVDPRIHFALNCGARSCPAVRFYNPHNLDATLHTATTTYLQDVDVDL
QLRTVTLPKLFQWYKRDFSPDASQHQLVEWTLQYLSPEKRTQVESLLQDN
KQRSLPLKLLFADYDWSLNDTSPAT*
back to top

spliced messenger RNA

>Gchil2583.t1 ID=Gchil2583.t1|Name=Gchil2583.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00004400_pilon:1695292..1696119+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGACGCGCGTGGCATTGGGCCGCGCGTCATGCTGCGCACGGCGGA
GGAGTTGAGTCAACGCATTCTCAAGCTGTACGCTAGCGTTGTGGACGTGG
CCTCCAACCACGTGCGCTACAACGCCCTTCGTTCGTCGCCGCACTTTCAG
CAGTACCTTGCTGCTGCCTGCAAGCTACGCTACTTCAACCCCGCTCTGCT
GCCGGAGTCGCACCGCAAGGCCTTCTTTCTCAACGTGTACAACAGTCTCA
TCATTCACGCCCTCGCCGTCATGTCGCCTCCCCGCACAAAGTTTGAGCGC
ATTTCGCTCTTCAATACCGCTGCCTACAACATTGGCGGTCGTGTGTACTC
ACTCAATATGATCGAGCACGGCATTCTGCGCGCCAACCACCCGGGCGCCG
GCCCGTTTGCCCTCCGCGTTTTCGCCCACAACGACCCCCGTCTGCAGTGC
GCTCTGTCGCGCGTCGACCCTCGCATCCACTTCGCGCTCAACTGCGGCGC
CAGGAGCTGCCCGGCCGTTCGCTTTTACAACCCGCACAACCTCGACGCCA
CCCTGCACACCGCCACCACAACCTACCTGCAAGACGTCGACGTCGACCTG
CAACTGCGCACCGTCACCCTCCCAAAGCTCTTTCAGTGGTATAAGCGCGA
CTTCAGCCCCGACGCCTCGCAGCATCAGCTCGTGGAATGGACCCTGCAGT
ATCTGTCCCCCGAAAAGCGCACTCAGGTCGAATCGCTGCTTCAAGACAAC
AAACAGCGCTCCCTTCCTTTGAAGCTACTCTTCGCCGATTATGACTGGTC
ACTCAACGATACTTCTCCTGCTACCTGA
back to top

protein sequence of Gchil2583.t1

>Gchil2583.t1 ID=Gchil2583.t1|Name=Gchil2583.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=276bp
MWDARGIGPRVMLRTAEELSQRILKLYASVVDVASNHVRYNALRSSPHFQ
QYLAAACKLRYFNPALLPESHRKAFFLNVYNSLIIHALAVMSPPRTKFER
ISLFNTAAYNIGGRVYSLNMIEHGILRANHPGAGPFALRVFAHNDPRLQC
ALSRVDPRIHFALNCGARSCPAVRFYNPHNLDATLHTATTTYLQDVDVDL
QLRTVTLPKLFQWYKRDFSPDASQHQLVEWTLQYLSPEKRTQVESLLQDN
KQRSLPLKLLFADYDWSLNDTSPAT*
back to top

mRNA from alignment at tig00004400_pilon:1695292..1696119+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2583.t1 ID=Gchil2583.t1|Name=Gchil2583.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00004400_pilon:1695292..1696119+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGGGACGCGCGTGGCATTGGGCCGCGCGTCATGCTGCGCACGGCGGA
GGAGTTGAGTCAACGCATTCTCAAGCTGTACGCTAGCGTTGTGGACGTGG
CCTCCAACCACGTGCGCTACAACGCCCTTCGTTCGTCGCCGCACTTTCAG
CAGTACCTTGCTGCTGCCTGCAAGCTACGCTACTTCAACCCCGCTCTGCT
GCCGGAGTCGCACCGCAAGGCCTTCTTTCTCAACGTGTACAACAGTCTCA
TCATTCACGCCCTCGCCGTCATGTCGCCTCCCCGCACAAAGTTTGAGCGC
ATTTCGCTCTTCAATACCGCTGCCTACAACATTGGCGGTCGTGTGTACTC
ACTCAATATGATCGAGCACGGCATTCTGCGCGCCAACCACCCGGGCGCCG
GCCCGTTTGCCCTCCGCGTTTTCGCCCACAACGACCCCCGTCTGCAGTGC
GCTCTGTCGCGCGTCGACCCTCGCATCCACTTCGCGCTCAACTGCGGCGC
CAGGAGCTGCCCGGCCGTTCGCTTTTACAACCCGCACAACCTCGACGCCA
CCCTGCACACCGCCACCACAACCTACCTGCAAGACGTCGACGTCGACCTG
CAACTGCGCACCGTCACCCTCCCAAAGCTCTTTCAGTGGTATAAGCGCGA
CTTCAGCCCCGACGCCTCGCAGCATCAGCTCGTGGAATGGACCCTGCAGT
ATCTGTCCCCCGAAAAGCGCACTCAGGTCGAATCGCTGCTTCAAGACAAC
AAACAGCGCTCCCTTCCTTTGAAGCTACTCTTCGCCGATTATGACTGGTC
ACTCAACGATACTTCTCCTGCTACCTGA
back to top

Coding sequence (CDS) from alignment at tig00004400_pilon:1695292..1696119+

>Gchil2583.t1 ID=Gchil2583.t1|Name=Gchil2583.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=828bp|location=Sequence derived from alignment at tig00004400_pilon:1695292..1696119+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGGGACGCGCGTGGCATTGGGCCGCGCGTCATGCTGCGCACGGCGGA
GGAGTTGAGTCAACGCATTCTCAAGCTGTACGCTAGCGTTGTGGACGTGG
CCTCCAACCACGTGCGCTACAACGCCCTTCGTTCGTCGCCGCACTTTCAG
CAGTACCTTGCTGCTGCCTGCAAGCTACGCTACTTCAACCCCGCTCTGCT
GCCGGAGTCGCACCGCAAGGCCTTCTTTCTCAACGTGTACAACAGTCTCA
TCATTCACGCCCTCGCCGTCATGTCGCCTCCCCGCACAAAGTTTGAGCGC
ATTTCGCTCTTCAATACCGCTGCCTACAACATTGGCGGTCGTGTGTACTC
ACTCAATATGATCGAGCACGGCATTCTGCGCGCCAACCACCCGGGCGCCG
GCCCGTTTGCCCTCCGCGTTTTCGCCCACAACGACCCCCGTCTGCAGTGC
GCTCTGTCGCGCGTCGACCCTCGCATCCACTTCGCGCTCAACTGCGGCGC
CAGGAGCTGCCCGGCCGTTCGCTTTTACAACCCGCACAACCTCGACGCCA
CCCTGCACACCGCCACCACAACCTACCTGCAAGACGTCGACGTCGACCTG
CAACTGCGCACCGTCACCCTCCCAAAGCTCTTTCAGTGGTATAAGCGCGA
CTTCAGCCCCGACGCCTCGCAGCATCAGCTCGTGGAATGGACCCTGCAGT
ATCTGTCCCCCGAAAAGCGCACTCAGGTCGAATCGCTGCTTCAAGACAAC
AAACAGCGCTCCCTTCCTTTGAAGCTACTCTTCGCCGATTATGACTGGTC
ACTCAACGATACTTCTCCTGCTACCTGA
back to top