Gchil9389.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil9389.t1
Unique Name	Gchil9389.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	402

Homology

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BLAST of Gchil9389.t1 vs. uniprot
Match: A0A2V3IN36_9FLOR (Plant intracellular Ras-group-related LRR protein 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN36_9FLOR)

HSP 1 Score: 395 bits (1014), Expect = 1.040e-132
Identity = 313/401 (78.05%), Postives = 354/401 (88.28%), Query Frame = 0

Query:    1 MGASGSKSAAKNASGADPAQNSNSDVSAVAPAEDMVPDPTLDAEPDDTHPSASEAPPISSTLIEQPGKKKVENIKFHNPYEDETNQTGLSTYEMRIQESFYSTPERPRSKAYTAAKEAAAARXXXXXXXXXXXXXXKSSAKVEVEEELVPHTVNWAIHNTKKLGVLNMSRMDLTTIPDLIFESMPGTLRIINISFNRFETLDPRLCDYVLVRRLIANGNFLTSLPTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFDTLDLTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEYMSLRSLSALTLDANRISDFPDAIFQVCKDLVTLRLRANPIKMNILEAKPAYNEFKERRRIRFKRQLDTGSITIEDLNPADTN 401
            MGAS SK+AA  A      +NSNSD SAVAPA+D + DP    E D+  P   + PP +++L+E PGKK+VE++KFHNP +D TNQTGLS YEMRIQ+SFYSTP RP+SKAYTAAKEAA   XXXXXXXXXXXXXXKS++K+  EE+LVPHTV+WAIHNTKKLGVLN+S+MDLT IPDL+F+SMPGTLRIINISFNRFE+LDPRLCDYVLV+RLIANGNFL+SLP+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +LDLTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEYM+LRSL A TLD+NRISDFP+AI QVC DL+TLRLRANPIKMN+LE KPAY EF ERRRI+FKRQ++ GS++IEDLNPAD+N
Sbjct:    1 MGASASKTAANTA------RNSNSDASAVAPADDSLQDPPQ-CESDEHQP---QPPPPTASLVELPGKKQVEDLKFHNPVDDGTNQTGLSVYEMRIQDSFYSTPARPKSKAYTAAKEAAXXXXXXXXXXXXXXXXXKSASKMPEEEQLVPHTVDWAIHNTKKLGVLNLSKMDLTVIPDLVFDSMPGTLRIINISFNRFESLDPRLCDYVLVQRLIANGNFLSSLPSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASLDLTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEYMALRSLIAFTLDSNRISDFPEAILQVCTDLITLRLRANPIKMNVLEVKPAYAEFAERRRIKFKRQIEAGSVSIEDLNPADSN 391

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BLAST of Gchil9389.t1 vs. uniprot
Match: R7QK78_CHOCR (Leucine-rich repeat-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QK78_CHOCR)

HSP 1 Score: 181 bits (460), Expect = 1.390e-50
Identity = 172/308 (55.84%), Postives = 201/308 (65.26%), Query Frame = 0

Query:   94 MRIQESFYSTPERPRSKAYTAAKEAAAARXXXXXXXXXXXXXXKSSAKVEVEE--ELVPHTVNWAIHNTKKLGVLNMSRMDLTTIPDLIFESMPGTLRIINISFNRFETLDPRLCDYVLVRRLIANGNFLTSLPTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFDTLDLTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEYMSLRSLSALTLDANRISDFPDAIFQVCKDLVTLRLRANPIKMNILEAKPAYNEFKERRRIRFKRQLDTGSITIEDLNPAD 399
            MRIQ+SF+S P R RSKAYTAAKEA  A+ XXXXXXXXXXXXX      +  +  ELVP+TV WAI NTKKLG+LN+S+M L ++PD +FES+PGT RI+NISFNR   LD RLCDYVLV+RLIANGN L+S+P               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    L LT+L                     XXXXXXXXXXXXX                     FP+ I Q+C +LVTLRL  NP++M  LE K +Y +F ERRR + +RQLD G+IT  DL P +
Sbjct:    1 MRIQDSFFSAPNRNRSKAYTAAKEAENAKKXXXXXXXXXXXXXXXXXXXKGTDTPELVPNTVPWAIENTKKLGILNLSKMQLESVPDEVFESLPGTARILNISFNRITELDTRLCDYVLVQRLIANGNLLSSIPQNIVRMTALKKLDLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELQLTALSLGRNAFTTAPLQVTSMEWLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPNVILQMCVELVTLRLTDNPMRMAALEGKASYVDFAERRRTKLRRQLDAGTITEADLLPCN 308

The following BLAST results are available for this feature:

BLAST of Gchil9389.t1 vs. uniprot

BLAST of Gchil9389.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IN36_9FLOR	1.040e-132	78.05	Plant intracellular Ras-group-related LRR protein ...	[more]
R7QK78_CHOCR	1.390e-50	55.84	Leucine-rich repeat-containing protein n=1 Tax=Cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 117..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR16083:SF27	LEUCINE-RICH REPEAT PROTEIN SOC-2 HOMOLOG-LIKE PROTEIN	coord: 157..275
None	No IPR available	PANTHER	PTHR16083	LEUCINE RICH REPEAT CONTAINING PROTEIN	coord: 157..275
None	No IPR available	PANTHER	PTHR16083	LEUCINE RICH REPEAT CONTAINING PROTEIN	coord: 219..367
None	No IPR available	PANTHER	PTHR16083:SF27	LEUCINE-RICH REPEAT PROTEIN SOC-2 HOMOLOG-LIKE PROTEIN	coord: 219..367
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 157..362
IPR003591	Leucine-rich repeat, typical subtype	SMART	SM00369	LRR_typ_2	coord: 231..253 e-value: 0.0088 score: 25.2 coord: 254..276 e-value: 3.1 score: 16.8 coord: 299..321 e-value: 300.0 score: 1.2 coord: 322..345 e-value: 0.87 score: 18.6
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 249..387 e-value: 1.6E-24 score: 88.3
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 146..248 e-value: 1.7E-17 score: 65.0
IPR001611	Leucine-rich repeat	PFAM	PF13855	LRR_8	coord: 233..289 e-value: 5.1E-11 score: 42.2

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:3662449..3663654 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil9389.t1	Gchil9389.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00004370_pilon 3662449..3663654 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil9389.t1 ID=Gchil9389.t1|Name=Gchil9389.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=402bp
MGASGSKSAAKNASGADPAQNSNSDVSAVAPAEDMVPDPTLDAEPDDTHP
SASEAPPISSTLIEQPGKKKVENIKFHNPYEDETNQTGLSTYEMRIQESF
YSTPERPRSKAYTAAKEAAAARKIAKAERKAQRARKKSSAKVEVEEELVP
HTVNWAIHNTKKLGVLNMSRMDLTTIPDLIFESMPGTLRIINISFNRFET
LDPRLCDYVLVRRLIANGNFLTSLPTTICRMTALKKLDLARNKLTALPDA
FGGMRHLEHVDLSDNLLNELPPSFDTLDLTSLNLSRNKFTIAPLEITSME
MLLDLDMSDNQLIAVPDEYMSLRSLSALTLDANRISDFPDAIFQVCKDLV
TLRLRANPIKMNILEAKPAYNEFKERRRIRFKRQLDTGSITIEDLNPADT
N*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003591	Leu-rich_rpt_typical-subtyp
IPR032675	LRR_dom_sf
IPR001611	Leu-rich_rpt