Gchil9377.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil9377.t1
Unique Name	Gchil9377.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	174

Homology

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BLAST of Gchil9377.t1 vs. uniprot
Match: A0A2V3IV77_9FLOR (Putative RNA-binding protein EIF1AD n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IV77_9FLOR)

HSP 1 Score: 153 bits (387), Expect = 2.150e-44
Identity = 82/152 (53.95%), Postives = 105/152 (69.08%), Query Frame = 0

Query:    1 MTTPGKRRQRVQLLSEQPTLLPGQQVAKVLQALGENTYQTLLGDGRKGLYRLPKRLRQVAYIRRGSFVFVRDHAKVRGRITGDIELIVLGTFMSSITKEVFWPERFRAQGSEEREK-VKEINSNEEEQEEEWTFGEGNPNRGVWDDLTSSSD 151
            MTTPG RR+R QLLSE P L PGQQVA++ +ALGENTY+  L  G   L RLPKRLR VAYIRR SFVFVR+HA+ RGR+ GDIEL+VL  F+ ++ KE FWP  F     +  E  V   +S++  +E++W  G+GNPNR +   + SS +
Sbjct:    1 MTTPGNRRRRTQLLSELPALKPGQQVAQITRALGENTYEVRLEGGHLQLVRLPKRLRDVAYIRRDSFVFVREHAEARGRVVGDIELVVLPAFLPALRKEHFWPAAFHPHRLKRDEHDVPVHDSSDSAEEDDWQLGQGNPNRRMLSHMASSDE 152

[Close]

BLAST of Gchil9377.t1 vs. uniprot
Match: R7QD95_CHOCR (S1-like domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QD95_CHOCR)

HSP 1 Score: 119 bits (297), Expect = 5.820e-31
Identity = 66/156 (42.31%), Postives = 95/156 (60.90%), Query Frame = 0

Query:    5 GKRRQRVQLLSEQPTLLPGQQVAKVLQALGENTYQTLLGDGRKGLYRLPKRLRQVAYIRRGSFVFVRD-HAKVRGRITGDIELIVLGTFMSSITKEVFWPERFRAQGSEEREKVKEINS----NEEEQ----EEEWTFGEGNPNRGVWDDLTSSSD 151
              RR+++Q LSE P L  GQ+VA+V+ A GEN Y+     G K LY+LPKR+R V +IRRGS+VFV+D   +  GR+ GDIE++VL  F+  I+KE +WP  F+ +     +    ++     N EE+    +E+W  G GNPNR  W D +S  +
Sbjct:    4 ANRRKQLQALSEPPVLEEGQKVARVIAACGENNYEVEDEHGAKTLYQLPKRMRHVVFIRRGSYVFVKDDETRKDGRVRGDIEVVVLTHFLHGISKEPYWPRSFKGEEDNTEDMPAIVSEGAGGNSEEEPGHGDEQWEIGSGNPNRAQWQDQSSDEE 159

The following BLAST results are available for this feature:

BLAST of Gchil9377.t1 vs. uniprot

BLAST of Gchil9377.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IV77_9FLOR	2.150e-44	53.95	Putative RNA-binding protein EIF1AD n=1 Tax=Gracil...	[more]
R7QD95_CHOCR	5.820e-31	42.31	S1-like domain-containing protein n=1 Tax=Chondrus...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 110..130
None	No IPR available	GENE3D	2.40.50.140		coord: 12..88 e-value: 1.5E-14 score: 55.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..165
IPR001253	Translation initiation factor 1A (eIF-1A)	SMART	SM00652	eIF1neu4	coord: 19..103 e-value: 2.2E-5 score: 32.0
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 23..81 e-value: 4.1E-8 score: 32.9
IPR006196	RNA-binding domain, S1, IF1 type	PROSITE	PS50832	S1_IF1_TYPE	coord: 9..71 score: 9.769542
IPR039294	Probable RNA-binding protein EIF1AD	PANTHER	PTHR21641	TRANSLATION INITIATION FACTOR-RELATED	coord: 1..152
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 17..129

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:3498740..3499350 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil9377.t1	Gchil9377.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00004370_pilon 3498740..3499350 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil9377.t1 ID=Gchil9377.t1|Name=Gchil9377.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=174bp
MTTPGKRRQRVQLLSEQPTLLPGQQVAKVLQALGENTYQTLLGDGRKGLY
RLPKRLRQVAYIRRGSFVFVRDHAKVRGRITGDIELIVLGTFMSSITKEV
FWPERFRAQGSEEREKVKEINSNEEEQEEEWTFGEGNPNRGVWDDLTSSS
DGGSTEDDDDTQVEEVETGDRCV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001253	TIF_eIF-1A
IPR006196	RNA-binding_domain_S1_IF1
IPR039294	EIF1AD
IPR012340	NA-bd_OB-fold