Gchil9352.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil9352.t1
Unique NameGchil9352.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length165
Homology
BLAST of Gchil9352.t1 vs. uniprot
Match: A0A2V3IRG8_9FLOR (50S ribosomal protein L12, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRG8_9FLOR)

HSP 1 Score: 267 bits (683), Expect = 1.370e-89
Identity = 141/160 (88.12%), Postives = 153/160 (95.62%), Query Frame = 0
Query:    5 RHLSTEAVAQESHGVPPPPSMTPVISTKVRGLLDDLVSLNMLEVKELTDALKDRLGIDDSAVMPMSMNPAMFAGMGAAPAPAPEEKVEEKTAFDLKLNKFDAAKKIAVIKEVRAITGLGLKEAKALVEDAPKVFKTEVAKEEAEQIRDKLKDIGGEVLLE 164
            R+LS EA++Q++ GVP PPSMTPV+S KV+GLLDDLVSLNMLEVKELTDALKDRLGIDDSA MPM++NPAMFAGMGAAPAPA EEKVEEKTAFDLKLNKFDAAKKIAVIKEVRA+TGLGLKEAKALVEDAPKVFKTEV K+EAEQIRDKLK+IGGEVLLE
Sbjct:   12 RYLSAEALSQDTQGVPSPPSMTPVVSAKVKGLLDDLVSLNMLEVKELTDALKDRLGIDDSASMPMAINPAMFAGMGAAPAPAAEEKVEEKTAFDLKLNKFDAAKKIAVIKEVRALTGLGLKEAKALVEDAPKVFKTEVPKDEAEQIRDKLKEIGGEVLLE 171          
BLAST of Gchil9352.t1 vs. uniprot
Match: R7QPT0_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPT0_CHOCR)

HSP 1 Score: 191 bits (484), Expect = 1.610e-58
Identity = 114/169 (67.46%), Postives = 129/169 (76.33%), Query Frame = 0
Query:    3 FPRHLSTEAV----AQESHGVPPPPSMTPVISTKVRGLLDDLVSLNMLEVKELTDALKDRLGIDDSAVMPMSMNPAMFAGM---GAAPAPAPEEKVEEKTAFDLKLNKFDAAKKIAVIKEVRAITGLGLKEAKALVEDAPKVFKTEVAKEEAEQIRDKLKDIGGEVLLE 164
            F R L  EA     A ++ G+PP        S +V+ +LD+LV LNMLEVK+LTD LKDRLGIDDS  MPM  NPAMFAGM     APA A  E V EK+AFDLKL KFDAAKKIAVIKE+R+ITGLGLKEAKA+VE+APKVFK+EVAKEEAEQIRDKLK+IG EV LE
Sbjct:   63 FMRQLCAEAAPTSSASDAIGIPPADGAATAESPRVQAILDELVQLNMLEVKQLTDGLKDRLGIDDSMTMPM--NPAMFAGMVPGAGAPAEA-AEPVVEKSAFDLKLEKFDAAKKIAVIKEIRSITGLGLKEAKAMVEEAPKVFKSEVAKEEAEQIRDKLKEIGAEVKLE 228          
BLAST of Gchil9352.t1 vs. uniprot
Match: UPI001E1D5A11 (50S ribosomal protein L7/L12-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D5A11)

HSP 1 Score: 177 bits (450), Expect = 7.110e-54
Identity = 104/153 (67.97%), Postives = 118/153 (77.12%), Query Frame = 0
Query:   18 GVPPPPSMTPVISTKVRGLLDDLVSLNMLEVKELTDALKDRLGIDDSAVMPMSMNPAMFAGMG------AAPAPAPEEKVEEKTAFDLKLNKFDAAKKIAVIKEVRAITGLGLKEAKALVEDAPKVFKTEVAKEEAEQIRDKLKDIGGEVLLE 164
            G P     + V   +V+ L+D+LVSLNMLEVK LTD+LKDRLGIDD+  MPM MNPAMFAGMG         A A EE V EKTAFDLKL  FDA+KKIAVIKE+RAITGLGLKEAKALV++APKVFK+ VAK EAE+IRDKLK+IG  V LE
Sbjct:   39 GAPFASGSSSVTPPRVQALVDELVSLNMLEVKALTDSLKDRLGIDDATAMPM-MNPAMFAGMGMPGTGVGGAAAAAEEPVVEKTAFDLKLEAFDASKKIAVIKEIRAITGLGLKEAKALVDEAPKVFKSAVAKGEAEEIRDKLKEIGATVALE 190          
BLAST of Gchil9352.t1 vs. uniprot
Match: A0A1X6NJE6_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJE6_PORUM)

HSP 1 Score: 153 bits (387), Expect = 3.080e-44
Identity = 96/142 (67.61%), Postives = 110/142 (77.46%), Query Frame = 0
Query:   29 ISTKVRGLLDDLVSLNMLEVKELTDALKDRLGIDDSAV---MPMSMNPAMFAGMGAAPAPAPEEKVEE---KTAFDLKLNKFDAAKKIAVIKEVRAITGLGLKEAKALVEDAPKVFKTEVAKEEAEQIRDKLKDIGGEVLLE 164
            +S KV  L+ ++V LNMLEVK+LTDALKDRLGIDD+A+   MPM MNPAMFAG  AAPA A          KTAFDLKL  F+AAKKI VIKEVRA+T LGLKEAKALVE+APKVF T VAK EAE IRDK++ +GG+V LE
Sbjct:   59 VSPKVGQLVKEIVDLNMLEVKQLTDALKDRLGIDDAALGGGMPM-MNPAMFAG--AAPAAAXXXXXXXXXXKTAFDLKLVSFEAAKKIGVIKEVRALTSLGLKEAKALVEEAPKVFMTGVAKAEAEGIRDKIEGLGGKVELE 197          
BLAST of Gchil9352.t1 vs. uniprot
Match: A0A7S0Q449_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q449_9EUKA)

HSP 1 Score: 134 bits (336), Expect = 2.170e-36
Identity = 79/137 (57.66%), Postives = 102/137 (74.45%), Query Frame = 0
Query:   30 STKVRGLLDDLVSLNMLEVKELTDALKDRLGIDDSAVMPMS-MNPAMFAGMG-AAPAPAPEEKVEEKTAFDLKLNKFDAAKKIAVIKEVRAITGLGLKEAKALVEDAPKVFKTEVAKEEAEQIRDKLKDIGGEVLLE 164
            S KV+ L+D + +L +LE  +LTDALK+RLGI  + +MP + M  A   G G A+ APA EE V EKTAF ++L KFDAA KI VIKEVR+ITGLGLKEAK LVE+APK  K ++ KEEAE I+ KL+++GG V++E
Sbjct:   73 SPKVQELVDQISALTLLEAAQLTDALKERLGISSAMMMPAAPMAAAAGPGPGLASAAPAEEEVVPEKTAFSVRLEKFDAASKIKVIKEVRSITGLGLKEAKELVENAPKELKGDIKKEEAEVIKAKLEEVGGVVVIE 209          
BLAST of Gchil9352.t1 vs. uniprot
Match: A0A8J5LHK3_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5LHK3_ZINOF)

HSP 1 Score: 128 bits (322), Expect = 9.630e-35
Identity = 78/139 (56.12%), Postives = 97/139 (69.78%), Query Frame = 0
Query:   32 KVRGLLDDLVSLNMLEVKELTDALKDRLGIDDSAVMPMSMNPAM------FAGMGAAPAPAPEEKVEEKTAFDLKLNKFDAAKKIAVIKEVRAITGLGLKEAKALVEDAPKVFKTEVAKEEAEQIRDKLKDIGGEVLLE 164
            +V  ++D++  L++LEV +LT+AL+ RLG+    VM + +NP M      F G GAA  P  EEK EEKTAFDLKL  FDAA KI +IKEVR  T LGLKEAK LVE AP V KT V KE+AE+I +KLK IG +V+LE
Sbjct:   36 RVSSIVDEISRLSLLEVADLTEALRVRLGVQQMPVMAI-LNPGMGGPAAAFPGAGAAAVP--EEKKEEKTAFDLKLESFDAASKIKIIKEVRTFTDLGLKEAKELVEKAPTVLKTGVPKEDAEKIVEKLKQIGAKVVLE 171          
BLAST of Gchil9352.t1 vs. uniprot
Match: A0A7S1EUI7_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EUI7_9RHOD)

HSP 1 Score: 127 bits (318), Expect = 1.830e-33
Identity = 76/137 (55.47%), Postives = 94/137 (68.61%), Query Frame = 0
Query:   29 ISTKVRGLLDDLVSLNMLEVKELTDALKDRLGIDDSAVMPMSMNPAMFAGMG-AAPAPAPEEKVEEKTAFDLKLNKFDAAKKIAVIKEVRAITGLGLKEAKALVEDAPKVFKTEVAKEEAEQIRDKLKDIGGEVLLE 164
            +S KV  LLD++V LNMLEVKEL+  LKDRLG+ D   MPM    AM A    AA APA   KVEEKT+F ++L  FDAAKKI +IKE+R +TGLGLKEAKALV+ AP V K  + K++A  +++KL   G    LE
Sbjct:   92 LSPKVSKLLDEIVQLNMLEVKELSSGLKDRLGLADLPSMPMGGMMAMPAAPAQAADAPAAAPKVEEKTSFTVRLTGFDAAKKIGIIKEIRTLTGLGLKEAKALVDSAPVVVKENLTKDDAAALQEKLTAAGATSELE 228          
BLAST of Gchil9352.t1 vs. uniprot
Match: A0A7S3E6W2_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E6W2_9RHOD)

HSP 1 Score: 125 bits (314), Expect = 3.040e-33
Identity = 78/164 (47.56%), Postives = 107/164 (65.24%), Query Frame = 0
Query:    8 STEAVAQESHGVPPPPSMTPVISTKVRGLLDDLVSLNMLEVKELTDALKDRLGIDDSAV-MPMSMNPAMFAGM------GAAPAPAPEEKVEEKTAFDLKLNKFDAAKKIAVIKEVRAITGLGLKEAKALVEDAPKVFKTEVAKEEAEQIRDKLKDIGGEVLLE 164
            ++EAVA +      P       + K+  LLDD+++LNMLEV+ELT  LKD+LG+ D  + MPM+  P            G   A + E K EEK+ F +KL  FD AKKIA+IKEVRA+TGLGLKEAKALV++AP V +  V K+EA++++ KL+++GG V LE
Sbjct:   39 NSEAVASDERSQEKP-------TEKIGKLLDDILALNMLEVRELTTHLKDKLGVGDIPMGMPMAAQPVXXXXXXXXXXXGDGGAASEEPKAEEKSVFTVKLAAFDQAKKIALIKEVRAVTGLGLKEAKALVDEAPNVVREGVPKDEAQELKAKLEELGGTVDLE 195          
BLAST of Gchil9352.t1 vs. uniprot
Match: A0A8B8NN88_9MYRT (uncharacterized protein LOC115736409 n=1 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8NN88_9MYRT)

HSP 1 Score: 124 bits (311), Expect = 6.170e-33
Identity = 77/161 (47.83%), Postives = 102/161 (63.35%), Query Frame = 0
Query:    8 STEAVAQESHGVPPPPSMTPVISTKVRGLLDDLVSLNMLEVKELTDALKDRLGIDDSAVMPMSMNPAMFA----GMGAAPAPAPEEKVEEKTAFDLKLNKFDAAKKIAVIKEVRAITGLGLKEAKALVEDAPKVFKTEVAKEEAEQIRDKLKDIGGEVLLE 164
            S  ++ +E     P  S  P  S +V  ++D++ +L +LEV +L + L+ ++GI+D   M + M    FA    G   A A AP EK  EKTAFDLKL  FDAA KI VIKEVRA T LGLKEAK LVE AP + K  VAKEEAE+I +K+K++G +V +E
Sbjct:   23 SIHSLNREFCSASPEQSRRPPPSDRVSAIIDEVSALTLLEVSDLAEELRKKMGIEDMPTMVVMMPGMGFAVRGTGRAGAGAAAPVEKKAEKTAFDLKLEGFDAAAKIKVIKEVRACTDLGLKEAKDLVEKAPTLLKKGVAKEEAEKIMEKMKEVGAKVTME 183          
BLAST of Gchil9352.t1 vs. uniprot
Match: A0A8B7BJX3_PHODC (LOW QUALITY PROTEIN: 50S ribosomal protein L7/L12 n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B7BJX3_PHODC)

HSP 1 Score: 124 bits (311), Expect = 9.840e-33
Identity = 75/140 (53.57%), Postives = 94/140 (67.14%), Query Frame = 0
Query:   30 STKVRGLLDDLVSLNMLEVKELTDALKDRLGIDDSAVMPMSM-NPAMFAGMG----AAPAPAPEEKVEEKTAFDLKLNKFDAAKKIAVIKEVRAITGLGLKEAKALVEDAPKVFKTEVAKEEAEQIRDKLKDIGGEVLLE 164
            S +V  ++DD+  L +LE+ +LT+AL+ RLG++   VM + M   A  A  G    A  A   EEK EEKTAFDLKL  FDAA KI +IKEVR  T LGLKEAK LVE AP V KT V KEEAE+I +K+K+IG +V +E
Sbjct:   61 SERVSAIVDDISGLTLLELADLTEALRSRLGVEQMPVMAVMMPGMASAASRGLAAWAGAAKEAEEKKEEKTAFDLKLESFDAASKIKIIKEVRTFTDLGLKEAKELVEKAPTVLKTGVLKEEAEKIVEKMKEIGAKVFME 200          
The following BLAST results are available for this feature:
BLAST of Gchil9352.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IRG8_9FLOR1.370e-8988.1350S ribosomal protein L12, chloroplastic n=1 Tax=G... [more]
R7QPT0_CHOCR1.610e-5867.46Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI001E1D5A117.110e-5467.9750S ribosomal protein L7/L12-like n=1 Tax=Mercenar... [more]
A0A1X6NJE6_PORUM3.080e-4467.61Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S0Q449_9EUKA2.170e-3657.66Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A8J5LHK3_ZINOF9.630e-3556.12Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A7S1EUI7_9RHOD1.830e-3355.47Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S3E6W2_9RHOD3.040e-3347.56Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A8B8NN88_9MYRT6.170e-3347.83uncharacterized protein LOC115736409 n=1 Tax=Rhoda... [more]
A0A8B7BJX3_PHODC9.840e-3353.57LOW QUALITY PROTEIN: 50S ribosomal protein L7/L12 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3D3.30.1390.10coord: 93..163
e-value: 3.5E-24
score: 86.7
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeSUPERFAMILY54736ClpS-likecoord: 92..163
IPR008932Ribosomal protein L7/L12, oligomerisationPFAMPF16320Ribosomal_L12_Ncoord: 35..82
e-value: 8.5E-9
score: 35.0
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 97..163
e-value: 2.1E-23
score: 82.5
IPR000206Ribosomal protein L7/L12TIGRFAMTIGR00855TIGR00855coord: 35..162
e-value: 4.8E-29
score: 99.3
IPR000206Ribosomal protein L7/L12PANTHERPTHR4598739S RIBOSOMAL PROTEIN L12coord: 22..164
IPR000206Ribosomal protein L7/L12HAMAPMF_00368Ribosomal_L7_L12coord: 30..164
score: 19.766294
IPR000206Ribosomal protein L7/L12CDDcd00387Ribosomal_L7_L12coord: 31..163
e-value: 7.08971E-42
score: 134.59
IPR036235Ribosomal protein L7/L12, oligomerisation domain superfamilyGENE3D1.20.5.710Single helix bincoord: 32..92
e-value: 3.2E-10
score: 41.9
IPR036235Ribosomal protein L7/L12, oligomerisation domain superfamilySUPERFAMILY48300Ribosomal protein L7/12, oligomerisation (N-terminal) domaincoord: 32..98

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:3228782..3229276 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9352.t1Gchil9352.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004370_pilon 3228782..3229276 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil9352.t1 ID=Gchil9352.t1|Name=Gchil9352.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=165bp
MMFPRHLSTEAVAQESHGVPPPPSMTPVISTKVRGLLDDLVSLNMLEVKE
LTDALKDRLGIDDSAVMPMSMNPAMFAGMGAAPAPAPEEKVEEKTAFDLK
LNKFDAAKKIAVIKEVRAITGLGLKEAKALVEDAPKVFKTEVAKEEAEQI
RDKLKDIGGEVLLE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014719Ribosomal_L7/12_C/ClpS-like
IPR008932Ribosomal_L7/L12_oligo
IPR013823Ribosomal_L7/L12_C
IPR000206Ribosomal_L7/12
IPR036235Ribosomal_L7/L12_oligo_N_sf