Gchil9310.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil9310.t1
Unique NameGchil9310.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length143
Homology
BLAST of Gchil9310.t1 vs. uniprot
Match: A0A2V3IZL7_9FLOR (Transcription initiation factor TFIID subunit 10 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZL7_9FLOR)

HSP 1 Score: 223 bits (567), Expect = 1.050e-72
Identity = 109/135 (80.74%), Postives = 122/135 (90.37%), Query Frame = 0
Query:    8 QERYELEKFVASLDEYSPTLPDNLVTHFLNRGGFQSEDIRVRRLVALATQKFIADVANESIARSRMRLAAVPAPKKGREHMKLVLTMEDLESALREFGVNVKKPPYFADSTTAGSEHVVVPKTNQAQPSTPKPKT 142
            QER E EKF+ SL  Y+PTLPD+L+TH+LNR GFQ++D+RVRRLVALATQKF+AD+ANESIARSRMRLAA PAPKKGREHMKLVLTMEDLESALREFGV VKKPPYFADST AG++H VVPKTNQ QP T KPK+
Sbjct:    9 QERQEFEKFINSLHNYTPTLPDSLITHYLNRAGFQTDDLRVRRLVALATQKFVADIANESIARSRMRLAATPAPKKGREHMKLVLTMEDLESALREFGVTVKKPPYFADSTNAGADHAVVPKTNQPQPGTQKPKS 143          
BLAST of Gchil9310.t1 vs. uniprot
Match: TAF10_ARATH (Transcription initiation factor TFIID subunit 10 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=TAF10_ARATH)

HSP 1 Score: 124 bits (312), Expect = 4.850e-34
Identity = 61/111 (54.95%), Postives = 84/111 (75.68%), Query Frame = 0
Query:   13 LEKFVASLDEYSPTLPDNLVTHFLNRGGFQSEDIRVRRLVALATQKFIADVANESIARSRMRLAAVPAPKKGREHMKLVLTMEDLESALREFGVNVKKPPYFADSTTAGSE 123
            L +F+ASL +Y+PT+PD+LV H+L + GFQ  D+R+ RLVA+ATQKF+ADVA++++   + R A V   KK ++  +LVLTMEDL  ALRE+GVNVK P YFADS + G +
Sbjct:   18 LTEFLASLMDYTPTIPDDLVEHYLAKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARPAPVVKDKKQQKDKRLVLTMEDLSKALREYGVNVKHPEYFADSPSTGMD 128          
BLAST of Gchil9310.t1 vs. uniprot
Match: A0A6J0KW86_RAPSA (Transcription initiation factor TFIID subunit 10 n=8 Tax=Brassicales TaxID=3699 RepID=A0A6J0KW86_RAPSA)

HSP 1 Score: 124 bits (312), Expect = 4.850e-34
Identity = 61/111 (54.95%), Postives = 84/111 (75.68%), Query Frame = 0
Query:   13 LEKFVASLDEYSPTLPDNLVTHFLNRGGFQSEDIRVRRLVALATQKFIADVANESIARSRMRLAAVPAPKKGREHMKLVLTMEDLESALREFGVNVKKPPYFADSTTAGSE 123
            L +F+ASL +Y+PT+PD+LV H+L + GFQ  D+R+ RLVA+ATQKF+ADVA++++   + R A V   KK ++  +LVLTMEDL  ALRE+GVNVK P YFADS + G +
Sbjct:   18 LTEFLASLMDYTPTIPDDLVEHYLAKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARPAPVVKDKKQQKDKRLVLTMEDLSKALREYGVNVKHPEYFADSPSTGMD 128          
BLAST of Gchil9310.t1 vs. uniprot
Match: A0A0D3A2S9_BRAOL (Uncharacterized protein n=4 Tax=Brassica TaxID=3705 RepID=A0A0D3A2S9_BRAOL)

HSP 1 Score: 125 bits (315), Expect = 1.220e-33
Identity = 62/111 (55.86%), Postives = 84/111 (75.68%), Query Frame = 0
Query:   13 LEKFVASLDEYSPTLPDNLVTHFLNRGGFQSEDIRVRRLVALATQKFIADVANESIARSRMRLAAVPAPKKGREHMKLVLTMEDLESALREFGVNVKKPPYFADSTTAGSE 123
            L +F+ASL +Y+PT+PD+LV H+L + GFQ  D+R+ RLVA+ATQKF+ADVA++++   R R A V   KK ++  +LVLTMEDL  ALRE+GVNVK P YFADS + G +
Sbjct:   87 LTEFLASLMDYTPTIPDDLVEHYLAKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCRARPAPVVKDKKQQKDKRLVLTMEDLSKALREYGVNVKHPEYFADSPSTGMD 197          
BLAST of Gchil9310.t1 vs. uniprot
Match: A0A7S0BNS5_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BNS5_9RHOD)

HSP 1 Score: 122 bits (307), Expect = 4.310e-33
Identity = 62/125 (49.60%), Postives = 88/125 (70.40%), Query Frame = 0
Query:   12 ELEKFVASLDEYSPTLPDNLVTHFLNRGGFQSEDIRVRRLVALATQKFIADVANESIARSRMRLAAVPAPKKGREHMKLVLTMEDLESALREFGVNVKKPPYFADSTTAGSEHVVVPKTNQAQPS 136
            E+ +FVASL +Y P +PD LV ++L + GFQ +D+RV RLVALA QKF+ADV  E+++ +R R  A+P   K     +LVL+ EDLE ALRE+GVN++KPPY+ADS   G      P+++ ++PS
Sbjct:   11 EVARFVASLSDYHPVIPDELVRYYLAKSGFQCDDVRVERLVALAAQKFLADVCLEALSHARSRQHAIPGKGKQAIDTRLVLSTEDLERALREYGVNMQKPPYYADSEIVGE-----PESSPSRPS 130          
BLAST of Gchil9310.t1 vs. uniprot
Match: A0A078GE09_BRANA (Transcription initiation factor TFIID subunit 10 n=17 Tax=Brassicaceae TaxID=3700 RepID=A0A078GE09_BRANA)

HSP 1 Score: 121 bits (303), Expect = 1.120e-32
Identity = 58/109 (53.21%), Postives = 82/109 (75.23%), Query Frame = 0
Query:   13 LEKFVASLDEYSPTLPDNLVTHFLNRGGFQSEDIRVRRLVALATQKFIADVANESIARSRMRLAAVPAPKKGREHMKLVLTMEDLESALREFGVNVKKPPYFADSTTAG 121
            L +F+ SL +Y+PT+PD+LV H+L + GFQ  D+R+ RLV++ATQKF+ADVA++++   + R A V   KK ++  +L+LTMEDL  ALRE+GVNVK P YFADS + G
Sbjct:   18 LTEFLGSLMDYTPTIPDDLVEHYLAKSGFQCPDVRLIRLVSVATQKFVADVASDALQHCKARPAPVVKEKKQQKDKRLILTMEDLSKALREYGVNVKHPEYFADSPSTG 126          
BLAST of Gchil9310.t1 vs. uniprot
Match: UPI00053B010C (transcription initiation factor TFIID subunit 10 isoform X1 n=2 Tax=Camelina sativa TaxID=90675 RepID=UPI00053B010C)

HSP 1 Score: 122 bits (306), Expect = 2.550e-32
Identity = 59/111 (53.15%), Postives = 83/111 (74.77%), Query Frame = 0
Query:   13 LEKFVASLDEYSPTLPDNLVTHFLNRGGFQSEDIRVRRLVALATQKFIADVANESIARSRMRLAAVPAPKKGREHMKLVLTMEDLESALREFGVNVKKPPYFADSTTAGSE 123
            L +F+ASL +Y+PT+PD+LV H+L + GFQ  D+R+ RLVA+ATQKF+ADVA++++   + R A     KK ++  +L+LTMEDL  ALRE+GVNVK P YFADS + G +
Sbjct:   84 LTEFLASLMDYTPTIPDDLVEHYLAKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARPAPFVKDKKQQKDKRLILTMEDLSKALREYGVNVKHPEYFADSPSTGMD 194          
BLAST of Gchil9310.t1 vs. uniprot
Match: A0A7S3EQ38_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EQ38_9RHOD)

HSP 1 Score: 119 bits (298), Expect = 3.780e-32
Identity = 57/105 (54.29%), Postives = 78/105 (74.29%), Query Frame = 0
Query:   12 ELEKFVASLDEYSPTLPDNLVTHFLNRGGFQSEDIRVRRLVALATQKFIADVANESIARSRMRLAAVPAPKKGREHMKLVLTMEDLESALREFGVNVKKPPYFAD 116
            E+ +FVASL +Y P +PD LV ++L + GFQ +D+RV RLVALA QKF+ADV  E+++ +R R  A+P   K     +LVL+ EDLE ALRE+GVN++KPPY+AD
Sbjct:   11 EVARFVASLSDYHPVIPDELVRYYLAKSGFQCDDVRVERLVALAAQKFLADVCMEALSHARSRQHAIPGKGKQAIDTRLVLSTEDLERALREYGVNMQKPPYYAD 115          
BLAST of Gchil9310.t1 vs. uniprot
Match: A0A7S0ZD84_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZD84_9RHOD)

HSP 1 Score: 120 bits (301), Expect = 3.910e-32
Identity = 62/130 (47.69%), Postives = 90/130 (69.23%), Query Frame = 0
Query:    9 ERYELEKFVASLDEYSPTLPDNLVTHFLNRGGFQSEDIRVRRLVALATQKFIADVANESIARSRMRLAAVPAPKKGREHMKLVLTMEDLESALREFGVNVKKPPYFADSTTAGSEHVVVPKTNQAQPSTP 138
            ER E+E+ +ASL EY   +PD LV+++L R GF+ +DIRV+RLV+LA QKF+AD+AN++IA S++R  +V    K  +  K+VLT EDL+ ALRE+GV+++KP Y+AD     +      KT   +PS P
Sbjct:    9 ERDEVERLLASLGEYELAIPDELVSYYLMRSGFKCDDIRVQRLVSLAAQKFLADIANDAIAHSKLRQQSVTTKAKVVKEPKMVLTSEDLDKALREYGVSLRKPAYYADHAAPATPEATG-KTGDGKPSAP 137          
BLAST of Gchil9310.t1 vs. uniprot
Match: A0A0A0LPV6_CUCSA (Transcription initiation factor TFIID subunit 10 n=7 Tax=Cucurbitaceae TaxID=3650 RepID=A0A0A0LPV6_CUCSA)

HSP 1 Score: 119 bits (298), Expect = 6.810e-32
Identity = 59/111 (53.15%), Postives = 82/111 (73.87%), Query Frame = 0
Query:   13 LEKFVASLDEYSPTLPDNLVTHFLNRGGFQSEDIRVRRLVALATQKFIADVANESIARSRMRLAAVPAPKKGREHM--KLVLTMEDLESALREFGVNVKKPPYFADSTTAG 121
            L +F+ASL EY+PT+PD LV H+L + GFQ  D+R+ RLVA+ATQKF+ADVA++++   + R AAV   K+ ++    +L+LTM+DL  ALRE+GVNVK   YFADS + G
Sbjct:   18 LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEYFADSPSTG 128          
The following BLAST results are available for this feature:
BLAST of Gchil9310.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IZL7_9FLOR1.050e-7280.74Transcription initiation factor TFIID subunit 10 n... [more]
TAF10_ARATH4.850e-3454.95Transcription initiation factor TFIID subunit 10 n... [more]
A0A6J0KW86_RAPSA4.850e-3454.95Transcription initiation factor TFIID subunit 10 n... [more]
A0A0D3A2S9_BRAOL1.220e-3355.86Uncharacterized protein n=4 Tax=Brassica TaxID=370... [more]
A0A7S0BNS5_9RHOD4.310e-3349.60Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A078GE09_BRANA1.120e-3253.21Transcription initiation factor TFIID subunit 10 n... [more]
UPI00053B010C2.550e-3253.15transcription initiation factor TFIID subunit 10 i... [more]
A0A7S3EQ38_9RHOD3.780e-3254.29Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0ZD84_9RHOD3.910e-3247.69Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A0A0LPV6_CUCSA6.810e-3253.15Transcription initiation factor TFIID subunit 10 n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPRINTSPR01443TFIID30KDSUBcoord: 25..41
score: 47.06
coord: 45..67
score: 53.91
coord: 89..111
score: 59.13
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPFAMPF03540TFIID_30kDacoord: 25..74
e-value: 3.4E-19
score: 68.5
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPANTHERPTHR21242TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10coord: 4..114
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitCDDcd07982TAF10coord: 12..114
e-value: 4.32504E-44
score: 138.512
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:3050051..3050479 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9310.t1Gchil9310.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004370_pilon 3050051..3050479 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil9310.t1 ID=Gchil9310.t1|Name=Gchil9310.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=143bp
MESTNTQQERYELEKFVASLDEYSPTLPDNLVTHFLNRGGFQSEDIRVRR
LVALATQKFIADVANESIARSRMRLAAVPAPKKGREHMKLVLTMEDLESA
LREFGVNVKKPPYFADSTTAGSEHVVVPKTNQAQPSTPKPKT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003923TFIID_30kDa