Gchil9256.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil9256.t1
Unique NameGchil9256.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length544
Homology
BLAST of Gchil9256.t1 vs. uniprot
Match: A0A2V3ITG6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITG6_9FLOR)

HSP 1 Score: 689 bits (1778), Expect = 4.950e-244
Identity = 347/534 (64.98%), Postives = 419/534 (78.46%), Query Frame = 0
Query:    1 MASRVVRFAGAKPSRTSLLARLREKGRVYAPESDMHPTLPHRDLLLKTLGREQHWKQLMKKQKQNFPKPHRHGRSTISEMVREARMAAQTGDLCTLESITRHASMIRDGNPTTCLRAVTVRAVLAVADDKEKTEAVMNALSPTINTLSNTDVGTVLDILVRGKLRQGDVEGALYGEKLSRVLEVGLRRGTYTQLIERTSVEKGIALLHRAICVGVEPNLRMFNVLLRSCCESGDGIHARAVMHEMGNRGLVANCDTMEALLIGAREIESVDAVSSIIQNGGVRLNGRVGGLLVRSYLRCVDADENRSTAVQRAVSVVDWFHKENVLVDRAALEFLTSYCARTNDFEAALRGWRELRRSWMGVGRARRALWIAARGHPLRQRLLQGAKPREMDRMYRADLGAIDPEKEEGRQLSDVEPLAQGNHKDIAAVLGRWMISGRSEGTLQWLKRAIASERGIHISWAVALLRGCERKWADSFIELLEGGYLCGKREVVLDRATSALWNWICWHKDWLPDADIFNLTEEQVRVRLNQVLRM 534
            M +R   F   +PSR +LLARLR KGRV+APESDM+PT PHRDLLLKTL RE+ WKQ      +  PK  R  R  IS MV+EA +AA++GDL  L+ +   AS   DG    CLRA+TVRAVLAVA+D EKT+ VMN LS  +N+LS+ DVG VLDI++RGKLR GD+EGALYGE+LSR L+V LRRGTYT LIER++VEKGIALLHRA+CVG  PNL+MFNVLL SCC+SG GIHARAVM+EMGNRG+ ANCDTMEALL GA  IESVDAVSSI+++GG +L  RVGGLL+R+YLRC D   NR+ AVQRA+SVV+W  +E V+VDR+ALE+LT  CA  N+ EAALRGWRELRRSWMGVGRARRALW   +GH LR RLL GAK R+++RM RADLGA+D   E  R+  D E L  G++K+IAAVLGRWMI+GR     +WLK  I +ERGIHI+WA ALLRG  RKWADSF+E+L GGY+CGKR+ VL+RAT+ LW WIC H+D LP+AD+ NLT++Q+ +RLN VLR+
Sbjct:    1 MVTRPSLFTSIQPSRKALLARLRSKGRVHAPESDMYPTFPHRDLLLKTLSRERQWKQNTADGSKPAPKRMRTDRVLISNMVKEATLAARSGDLNRLQELATEASRNHDGRSKVCLRAITVRAVLAVANDSEKTDLVMNTLSQIMNSLSSADVGAVLDIVIRGKLRNGDIEGALYGEQLSRALDVRLRRGTYTLLIERSNVEKGIALLHRAVCVGATPNLKMFNVLLSSCCQSGSGIHARAVMYEMGNRGMRANCDTMEALLQGAHGIESVDAVSSIVRSGGTQLCSRVGGLLMRAYLRCGDETANRALAVQRAISVVEWLQREGVVVDRSALEYLTRNCATRNETEAALRGWRELRRSWMGVGRARRALWNVTQGHALRDRLLHGAKKRDVERMRRADLGAVDVRGEGKRETGDAETLKSGDYKEIAAVLGRWMITGRDRDVEKWLKTGIENERGIHIAWACALLRGDGRKWADSFVEMLAGGYICGKRDAVLERATTELWKWICHHRDSLPEADVLNLTKKQLGLRLNNVLRV 534          
BLAST of Gchil9256.t1 vs. uniprot
Match: R7QLG0_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLG0_CHOCR)

HSP 1 Score: 256 bits (655), Expect = 6.580e-76
Identity = 168/412 (40.78%), Postives = 232/412 (56.31%), Query Frame = 0
Query:  110 NPTTCLRAVTVRAVLAVA-DDKEKTEAVMNALSPT--INTLSNTDVGTVLDILVRGKLRQGDVEGALYGEKLSRVLEVGLRRGTYTQLIERTS-VEKGIALLHRAICVGVEPNLRMFNVLLRSCCESGDGIHARAVMHEMGNRGLVANCDTMEALLIGAREIESVDAVSSIIQNG-GVRLNGRVGGLLVRSYLRCVDADENRSTA-VQRAVSVVDWFHKENVLVDRAALEFLTSYCARTNDFEAALRGWRELRRSWMGV-GR-ARRALWIAARGHP-LRQRLLQG-AKPREMDRMYRADLGAIDPEKEEGRQLSDVEPLAQGNHKDIAAVLGRWMISGRSEGTLQWLKRAIASER--GIHISWAVALLR----GCERKWADSFI-ELLEGGYLCGKREVVLDRATSALWNWI 504
            +P  CLRAVTV +V  VA  D EKT+A+MN L+    +  L + DVG +LD+LVRG L +GDV  A  GE LSR+LE  LRRGTY+ LIER+  +E G+A+ HRAI  G+EPN +M + +L  C  +GDG  ARAVM EM  RG+  N DT+  LL  A   +++ AV +++Q G  V L+  +    V +YLR     +      +  A  +VDWF    + V   A++ +  YC RT   E ALR WRE+RR W+G  GR  R+ LW+     P LR+RL+   A   ++ ++ R  L   D      R++ D+E L   + KD AAVL RW  SGR+E  +QW++R IA +R  G+     +A+L     G   K  D  +  L  G  + G R  VL R   A+W WI
Sbjct:   22 DPAVCLRAVTVASVQRVAASDSEKTKAIMNCLAEAQILQALPDKDVGILLDLLVRGMLCRGDVSNAFRGELLSRLLETRLRRGTYSSLIERSGKLELGLAVFHRAIATGIEPNRKMLHAVLGLCFSAGDGARARAVMAEMAGRGIRVNGDTISLLLARATCPDTISAVLNLVQGGDSVSLSPSLARPFVEAYLRVPAVKQEEIDGNIANAFEIVDWFFDRRIGVPHGAIDAILEYCVRTEHTEGALRAWREMRRGWLGPPGRKTRQKLWVMLEFRPQLRERLIGDVADAEQLGKLRRVALAHTD-----NREV-DMEVLESTDAKDQAAVLHRWSRSGRAEQAMQWIERQIAEKRNCGVDSRLVLAVLSDEDGGTRNKSLDFCLTHLASGTSVNGNRADVLRRTVDAIWRWI 427          
BLAST of Gchil9256.t1 vs. uniprot
Match: A0A7S1XBL7_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XBL7_9RHOD)

HSP 1 Score: 65.9 bits (159), Expect = 9.870e-8
Identity = 42/129 (32.56%), Postives = 66/129 (51.16%), Query Frame = 0
Query:  253 NCDTMEALLIGAREIESVDAVSSIIQNGGVRLNGRV---GGLLVRSYLRCVDADENRSTAVQRAVSVVDWFHKENVLVDRAALEFLTSYCARTNDFEAALRGWRELRRSWMGV--GRARRALWIAARGH 376
            N DT+  LL  A ++E VD V     +    L G       L V S+L C  +++   T V R+ +V+D F++  V    A+   +  +C +    + ALRGWRE+RR+W+G   G+A R L ++   H
Sbjct:  154 NGDTVAVLLRRASQVEEVDQVLEFFLSKRDNLGGLSTFQSHLFVASFLGC--SEDLTVTRVIRSFNVIDLFYRVEVGASSASFSLIIRFCLQHGMIDTALRGWREMRRAWLGAPNGQALRELMVSLANH 280          
The following BLAST results are available for this feature:
BLAST of Gchil9256.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3ITG6_9FLOR4.950e-24464.98Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QLG0_CHOCR6.580e-7640.78Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S1XBL7_9RHOD9.870e-832.56Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 183..282
e-value: 1.7E-10
score: 42.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 221..254
e-value: 5.2E-5
score: 21.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 218..252
score: 9.624079

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:2882820..2884451 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9256.t1Gchil9256.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004370_pilon 2882820..2884451 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil9256.t1 ID=Gchil9256.t1|Name=Gchil9256.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=544bp
MASRVVRFAGAKPSRTSLLARLREKGRVYAPESDMHPTLPHRDLLLKTLG
REQHWKQLMKKQKQNFPKPHRHGRSTISEMVREARMAAQTGDLCTLESIT
RHASMIRDGNPTTCLRAVTVRAVLAVADDKEKTEAVMNALSPTINTLSNT
DVGTVLDILVRGKLRQGDVEGALYGEKLSRVLEVGLRRGTYTQLIERTSV
EKGIALLHRAICVGVEPNLRMFNVLLRSCCESGDGIHARAVMHEMGNRGL
VANCDTMEALLIGAREIESVDAVSSIIQNGGVRLNGRVGGLLVRSYLRCV
DADENRSTAVQRAVSVVDWFHKENVLVDRAALEFLTSYCARTNDFEAALR
GWRELRRSWMGVGRARRALWIAARGHPLRQRLLQGAKPREMDRMYRADLG
AIDPEKEEGRQLSDVEPLAQGNHKDIAAVLGRWMISGRSEGTLQWLKRAI
ASERGIHISWAVALLRGCERKWADSFIELLEGGYLCGKREVVLDRATSAL
WNWICWHKDWLPDADIFNLTEEQVRVRLNQVLRMRGDVKFQRA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat