Gchil9253.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil9253.t1
Unique NameGchil9253.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length183
Homology
BLAST of Gchil9253.t1 vs. uniprot
Match: A0A2V3ITG1_9FLOR (Chlorophyll a-b binding protein 7, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITG1_9FLOR)

HSP 1 Score: 344 bits (882), Expect = 5.000e-119
Identity = 162/175 (92.57%), Postives = 170/175 (97.14%), Query Frame = 0
Query:    1 MEASKMSKSVPFLLKPKNLEGLPASYDFDPLLISDYINVRFLQAAEIKHGRICMLAAVGLIVPEFFTFPNPYFPKMLPVDAHNYFINTGGMSQILLFIAAFEALSCYALKQTVEGKHEPGYFGFDPLGLGKDPVQFKKYQANEIMNGRLAMIAVGGMIHQMWVSKMGVIEQLTHF 175
            M+  +MSKSVPFLLKPKNLEGLPASYDFDPLLISDYINVRFLQAAEIKHGRICMLAAVGLIVPEFFTFPNPYFPKML VDAHNYFINTGGMSQILLFIAAFE +SCYALKQT++GKHEPGYFGFDPLGLGKDPV+FKKYQANEIMNGRLAMIAVGGMIHQMW+SKMGVIEQL +F
Sbjct:   32 MKTREMSKSVPFLLKPKNLEGLPASYDFDPLLISDYINVRFLQAAEIKHGRICMLAAVGLIVPEFFTFPNPYFPKMLAVDAHNYFINTGGMSQILLFIAAFEGISCYALKQTIDGKHEPGYFGFDPLGLGKDPVKFKKYQANEIMNGRLAMIAVGGMIHQMWISKMGVIEQLLNF 206          
BLAST of Gchil9253.t1 vs. uniprot
Match: A0A5J4YKR2_PORPP (Fucoxanthin-chlorophyll a-c binding protein, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YKR2_PORPP)

HSP 1 Score: 250 bits (639), Expect = 4.280e-82
Identity = 115/177 (64.97%), Postives = 143/177 (80.79%), Query Frame = 0
Query:    1 MEASKMSKSVPFLLKPKNLEGLPASYDFDPLLISDYINVRFLQAAEIKHGRICMLAAVGLIVPEFFTFPNPYFPKMLPVDAHNYFINTGGMSQILLFIAAFEALSCYALKQTVEGKHEPGYFGFDPLGLGKDPVQFKKYQANEIMNGRLAMIAVGGMIHQMWVSKMGVIEQLTHFTP 177
            M AS MSKSVPFL KP  L+G   S +FDP+ IS+Y+++R+L+ +E+KHGRICMLAAVGLIV E  TF   YFPKMLPV AH++++ TGGMSQ+LLFIAAFE+LS +A+++T+EGK EPG FGFDPL LGK+P  F K++ +E+ NGRLAMIAVGGMIHQ WVS  G +EQL HF P
Sbjct:   27 MAASPMSKSVPFLKKPTQLDGWAGSAEFDPIGISEYVDIRYLRESELKHGRICMLAAVGLIVQELVTFGGKYFPKMLPVQAHDFYLKTGGMSQLLLFIAAFESLSYFAIRETLEGKREPGDFGFDPLNLGKEPAAFAKFRESELKNGRLAMIAVGGMIHQQWVSGQGTLEQLFHFKP 203          
BLAST of Gchil9253.t1 vs. uniprot
Match: A0A7S0BM28_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BM28_9RHOD)

HSP 1 Score: 244 bits (622), Expect = 3.530e-79
Identity = 116/174 (66.67%), Postives = 134/174 (77.01%), Query Frame = 0
Query:    6 MSKSVPFLLKPKNLEGLPASYDFDPLLISDYINVRFLQAAEIKHGRICMLAAVGLIVPEFFTFPNPYFPKMLPVDAHNYFINTGGMSQILLFIAAFEALSCYALKQTVEGKHEPGYFGFDPLGLGKDPVQFKKYQANEIMNGRLAMIAVGGMIHQMWVSKMGVIEQLTHFTPTT 179
            MSKSVPFL +PKN  GLP S +FDPL  SD I + FLQ AE+KHGRICMLAA+G +V E FTF   YFPKM PV+AH +++ TGGMSQILLFIA FE LSC A+ QT+ GK EPGYFGFDPLGLGKD   +KK+Q NEI NGRLAMIAVGG IHQ W +   V++QLT+F   T
Sbjct:   34 MSKSVPFLEQPKNCVGLPGSAEFDPLGFSDVIPIAFLQEAELKHGRICMLAALGFLVQELFTFGGSYFPKMPPVEAHEFYMKTGGMSQILLFIAGFEFLSCAAVYQTMLGKREPGYFGFDPLGLGKDEAAYKKFQVNEIKNGRLAMIAVGGFIHQYWATNQTVLDQLTNFHALT 207          
BLAST of Gchil9253.t1 vs. uniprot
Match: A0A7S3A203_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A203_9RHOD)

HSP 1 Score: 211 bits (536), Expect = 2.140e-66
Identity = 98/174 (56.32%), Postives = 131/174 (75.29%), Query Frame = 0
Query:    7 SKSVPFLLKPKNLEG-LPASYDFDPLLISDYINVRFLQAAEIKHGRICMLAAVGLIVPEFFTFPNPYFPK-MLPVDAHNYFINTGGMSQILLFIAAFEAL-SCYALKQTVEGKHEPGYFGFDPLGLGKDPVQFKKYQANEIMNGRLAMIAVGGMIHQMWVSKMGVIEQLTHFTP 177
            SK++PF+  P  L+G LP    FDPL +++Y +++++Q AEIKHGRICMLA +G +VPE FT P  YFPK +L VDAH+YF+ TGG++Q+ LFI+ +EA+    AL+ T+EGK  PG FGFDPLGLGKDP + KK Q  E++NGRLAM A+GG IHQ W+ K G+++QL HF P
Sbjct:   32 SKAMPFMEAPPALDGTLPGDNGFDPLGLTNYFDIKWMQEAEIKHGRICMLATLGFLVPELFTLPWAYFPKGILAVDAHDYFVKTGGLAQVNLFISGWEAIIGVAALQATMEGKRAPGDFGFDPLGLGKDPAKMKKNQTVELINGRLAMCAIGGFIHQQWIYKQGILDQLLHFKP 205          
BLAST of Gchil9253.t1 vs. uniprot
Match: Q9M441_GALSU (Light-harvesting protein n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q9M441_GALSU)

HSP 1 Score: 213 bits (543), Expect = 3.540e-66
Identity = 100/174 (57.47%), Postives = 132/174 (75.86%), Query Frame = 0
Query:    5 KMSKSVPFLLKPKNLEGLPAS-YDFDPLLISDYINVRFLQAAEIKHGRICMLAAVGLIVPEFFTFPNPYFPKMLPVDAHNYFINTGGMSQILLFIAAFEALSCYALKQTVEGKHEPGYFGFDPLGLGKDPVQFKKYQANEIMNGRLAMIAVGGMIHQMWVSKMGVIEQLTHFTP 177
            K SK++PF+L PKNL+G  A    FDPL  ++  +V++++ AE+KH RI MLAA+G +V E +TFP+PYF K+ PV AH+ ++ TGGMSQILLF+  FE +S +A+ Q +EGK EPG F FDPLGLGKDP  F+KY+ +E+ NGRLAMIAVGG IHQ WV+K G+ EQL +F P
Sbjct:  126 KWSKALPFMLWPKNLDGTMAGDVGFDPLGFTNVFDVKWMREAELKHCRIAMLAALGFMVQELWTFPHPYFSKVPPVLAHDVYVKTGGMSQILLFVIFFEIISVFAVSQMMEGKREPGVFHFDPLGLGKDPDTFRKYEWSELRNGRLAMIAVGGFIHQYWVTKQGIFEQLANFKP 299          
BLAST of Gchil9253.t1 vs. uniprot
Match: M2VZV1_GALSU (Light-harvesting complex protein n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VZV1_GALSU)

HSP 1 Score: 208 bits (530), Expect = 2.810e-64
Identity = 98/174 (56.32%), Postives = 129/174 (74.14%), Query Frame = 0
Query:    5 KMSKSVPFLLKPKNLEGLPAS-YDFDPLLISDYINVRFLQAAEIKHGRICMLAAVGLIVPEFFTFPNPYFPKMLPVDAHNYFINTGGMSQILLFIAAFEALSCYALKQTVEGKHEPGYFGFDPLGLGKDPVQFKKYQANEIMNGRLAMIAVGGMIHQMWVSKMGVIEQLTHFTP 177
            K SK++PF+L P+NL+G  A    FDP   ++  +V++++ AE+KH RI MLAA+G IV E +TFP PYF K+ PV AH+ ++ TGGMSQILLF+  FE +S +A+ Q +EGK EPG F FDPLGL KDP  F+KY+ +E+ NGRLAMIAVGG IHQ WV+K G+ EQL +F P
Sbjct:  121 KWSKALPFMLWPQNLDGTMAGDVGFDPFGFTNVFDVKWMREAELKHCRIAMLAALGFIVQELWTFPYPYFSKVPPVLAHDVYVKTGGMSQILLFVIFFEVISLFAVSQMMEGKREPGVFHFDPLGLAKDPDTFRKYEWSELRNGRLAMIAVGGFIHQYWVTKQGIFEQLANFRP 294          
BLAST of Gchil9253.t1 vs. uniprot
Match: A0A7S1TDA8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDA8_9RHOD)

HSP 1 Score: 204 bits (519), Expect = 2.950e-63
Identity = 92/172 (53.49%), Postives = 123/172 (71.51%), Query Frame = 0
Query:    5 KMSKSVPFLLKPKNLEG-LPASYDFDPLLISDYINVRFLQAAEIKHGRICMLAAVGLIVPEFFTFPNPYFPKMLPVDAHNYFINTGGMSQILLFIAAFEALSCYALKQTVEGKHEPGYFGFDPLGLGKDPVQFKKYQANEIMNGRLAMIAVGGMIHQMWVSKMGVIEQLTHF 175
            K+S+S+PF+  P  L+G +     FDPL ++   ++R+++ +E+KHGRI MLA VG +V E FT P PYFP ML VDAH+YF+ TGGMSQ+LLF++A E +   AL +T++G  EPGYFGFDPL   KD    KK+  NE+ NGRLAMIA+GG IH  W+ K G+I+ LTHF
Sbjct:   72 KLSESMPFMEAPPALDGSMAGDIGFDPLGLTKVFDIRWMRESELKHGRIAMLACVGFLVQEAFTLPAPYFPSMLAVDAHDYFVKTGGMSQLLLFLSALEVIGTVALAETMQGTREPGYFGFDPLNFSKDEASTKKFAENEVKNGRLAMIAIGGFIHYEWMYKTGIIDGLTHF 243          
BLAST of Gchil9253.t1 vs. uniprot
Match: A0A1X6NRG2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NRG2_PORUM)

HSP 1 Score: 201 bits (512), Expect = 1.210e-62
Identity = 99/173 (57.23%), Postives = 130/173 (75.14%), Query Frame = 0
Query:    4 SKMSKSVPFLLKPKNLEGLPASYDFDPLLISDYINVRFLQAAEIKHGRICMLAAVGLIVPEFFTFPNPYFPKMLP-VDAHNYFINTGGMSQILLFIAAFEALSCYALKQTVEGKHEPGYFGFDPLGLGKDPVQFKKYQANEIMNGRLAMIAVGGMIHQMWVSKMGVIEQLTHF 175
            ++MSKSVPFLLKPKNL+G  A+ +FDPL ISDY+ V +L+ +E+KHGRICMLA+VGL+V E FT+   YFPK+ P + AH++++ TG M+Q+L+FI AFEA+S YA+KQT++G+  PG F FDPLGLGKD  +   Y+  EI NGRLAMI  GG+I    V   G I+ L HF
Sbjct:   41 AEMSKSVPFLLKPKNLDGWAANAEFDPLGISDYVPVAYLRESELKHGRICMLASVGLLVQEVFTWGGSYFPKITPTIAAHDHYLQTG-MAQLLIFIGAFEAISYYAIKQTLKGERAPGDFKFDPLGLGKDAAKRAHYEKAEIKNGRLAMIGTGGIITGQQVFGRGTIDMLQHF 212          
BLAST of Gchil9253.t1 vs. uniprot
Match: A0A7S0ZFY5_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZFY5_9RHOD)

HSP 1 Score: 197 bits (501), Expect = 3.420e-62
Identity = 90/123 (73.17%), Postives = 106/123 (86.18%), Query Frame = 0
Query:   53 CMLAAVGLIVPEFFTFPNPYFPKMLPVDAHNYFINTGGMSQILLFIAAFEALSCYALKQTVEGKHEPGYFGFDPLGLGKDPVQFKKYQANEIMNGRLAMIAVGGMIHQMWVSKMGVIEQLTHF 175
            CMLAAVG++V EFFTF   YFPKMLPVDAH+Y++ TGGMSQ+LLFIA FE++S +A+KQT+EGK EPG F FDPL LGKDP  F +++ NE+ NGRLAMIAVGG IHQMWVSKMGVIEQLT+F
Sbjct:    1 CMLAAVGILVQEFFTFGGKYFPKMLPVDAHDYYLKTGGMSQLLLFIAGFESMSYFAIKQTLEGKREPGDFAFDPLSLGKDPAVFARFRENELKNGRLAMIAVGGFIHQMWVSKMGVIEQLTNF 123          
BLAST of Gchil9253.t1 vs. uniprot
Match: R7QUA5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QUA5_CHOCR)

HSP 1 Score: 187 bits (475), Expect = 4.770e-57
Identity = 89/173 (51.45%), Postives = 120/173 (69.36%), Query Frame = 0
Query:    5 KMSKSVPFLLKPKNLE--GLPASYDFDPLLISDYINVRFLQAAEIKHGRICMLAAVGLIVPEFFTFPNPYFPKMLPVDAHNYFINTGGMSQILLFIAAFEALSCYALKQTVEGKHEPGYFGFDPLGLGKDPVQFKKYQANEIMNGRLAMIAVGGMIHQMWVSKMGVIEQLTHF 175
            K+S ++PF+ +P +L+   +P +  FDP  +S   N++++Q AEIKH R+ ML  +G+++PE   FP      M P +AH++F+ TGGMSQILLF++ FE     ALK T++G   PGYF FDPLGLGK+P  FKKYQ +EI NGRLAM A GG+ H   VSK GVI+QLTHF
Sbjct:   35 KISPAMPFMEQPASLDDPSIPGNAGFDPFNLSGAFNLKWMQEAEIKHCRVAMLGVLGVVIPEIIRFPGV--KAMTPTEAHDFFVKTGGMSQILLFVSFFEIFGSVALKATLDGTRAPGYFAFDPLGLGKNPDVFKKYQLSEIKNGRLAMCAFGGLYHAGLVSKTGVIDQLTHF 205          
The following BLAST results are available for this feature:
BLAST of Gchil9253.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ITG1_9FLOR5.000e-11992.57Chlorophyll a-b binding protein 7, chloroplastic n... [more]
A0A5J4YKR2_PORPP4.280e-8264.97Fucoxanthin-chlorophyll a-c binding protein, chlor... [more]
A0A7S0BM28_9RHOD3.530e-7966.67Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3A203_9RHOD2.140e-6656.32Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
Q9M441_GALSU3.540e-6657.47Light-harvesting protein n=2 Tax=Galdieria sulphur... [more]
M2VZV1_GALSU2.810e-6456.32Light-harvesting complex protein n=2 Tax=Galdieria... [more]
A0A7S1TDA8_9RHOD2.950e-6353.49Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A1X6NRG2_PORUM1.210e-6257.23Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S0ZFY5_9RHOD3.420e-6273.17Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
R7QUA5_CHOCR4.770e-5751.45Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 16..160
e-value: 2.7E-35
score: 122.3
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 7..180
e-value: 1.7E-40
score: 141.0
NoneNo IPR availablePANTHERPTHR21649:SF125CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTICcoord: 4..172
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 84..109
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 110..182
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 52..72
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..51
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 73..83
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 4..176
NoneNo IPR availableTMHMMTMhelixcoord: 84..106
NoneNo IPR availableTMHMMTMhelixcoord: 144..163
NoneNo IPR availableTMHMMTMhelixcoord: 47..69
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 4..172

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:2871867..2872415 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9253.t1Gchil9253.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004370_pilon 2871867..2872415 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil9253.t1 ID=Gchil9253.t1|Name=Gchil9253.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=183bp
MEASKMSKSVPFLLKPKNLEGLPASYDFDPLLISDYINVRFLQAAEIKHG
RICMLAAVGLIVPEFFTFPNPYFPKMLPVDAHNYFINTGGMSQILLFIAA
FEALSCYALKQTVEGKHEPGYFGFDPLGLGKDPVQFKKYQANEIMNGRLA
MIAVGGMIHQMWVSKMGVIEQLTHFTPTTGGM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln