Gchil9130.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male
|
Overview
Homology
BLAST of Gchil9130.t1 vs. uniprot
Match: A0A2V3IN35_9FLOR (Mediator of RNA polymerase II transcription subunit 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN35_9FLOR) HSP 1 Score: 648 bits (1672), Expect = 4.360e-226 Identity = 352/617 (57.05%), Postives = 443/617 (71.80%), Query Frame = 0
Query: 1 MTDALARQADQAERIHSTQQPQTAREALYRITALLRAVAAPHAFNLSQPHLPTPSTTVPATQTSSRSPAALHIAAAGTPAVSEPSPPDNQPDLHPLSTVCLPYVRRALYSSLEVLKQAAEARETWAKDATHHLRRIRYDSLLRQNATLDARLSYSICRHLAQTNDPFAPPYFRTLNRLRHLGEHLQAITTHEVTDNNTKTRLTVCSASFLADFHFKHSSRSPPEVSAKLRILLSNDQQVIDENADLHLSRLVTASRFDILQRVFANLMRMEKLSALAELPLVDALRCFEEDLLQVASMECVTDPFMHHGHIVRTALGLRIQFSASHAAFLGMEHVLSKCEISVTRGQVIRTDPNAQCKFMHGKKAPVSAQYVLTLTSPIPAFLSVLHTLHRVSLDPMHLHTKGPSLVSVPTASNDAYWKGDSEGSGRLSWPSLSHLVIARAVKEQKLSSAKPSSSNNKADRMLSPALPDGSFLHFQQYGTNPAPAMRIKRIPLRTMSDIFPVLQLLRQQLVYNELLLSCVDVNASVEQSKKDAKVRTVEMVPEGSPGFMHFSVYDESINNVLSLVVHITRGGAISVALKTANSGPAWCSDAKATKILRTCRSIPLTLYTLISMSKRG 617
MT AL R+A+QAE I ST+ P+TAREALYRITALLR ++ P +FNLS P TT +NQ DLHPLSTVCLPYVRRALYSSLE L+ A +AR+TW +D+T HLRRIR+D+L R +ATLD+RL+ SI R+LA T DPFAPPYF LN+LRHL E L AIT EV+ N T LT+C+A+FLADFHF+H+ P V AKLR+L + +Q+V D+N D HL++LVT SRFD+LQRVF +LMR EKLS AELPLVDALR FE+DLL AS+E +PF HGHIVRTALGLRIQF+ +HAAFL MEHVLSK EISV R ++ + C F+ GKKA V+AQYVLTLT+PIPAFLSVLHTL R+S+ + + +K P+LV P ++D + K +S+ + + WP LS L++ A+ ++K +A ++ + ++ M SP LP+G L FQQ G +PA AM+I R+PLRT +D+FPVLQLLRQQLV+NEL SCV + +S Q K+ + VEMV EGSP FM S YD+SI++VLS+VVHI GG ISV LKTAN+ P +CSD KAT+IL+TCRSIPLTLY L++MS RG
Sbjct: 1 MTSALTREAEQAELICSTETPKTAREALYRITALLRTLSTPQSFNLSSP------TTA-----------------------------NNQADLHPLSTVCLPYVRRALYSSLEFLENAVQARDTWNRDSTQHLRRIRHDALTRHHATLDSRLALSISRNLAHTEDPFAPPYFLILNKLRHLAERLLAITNQEVSAN--ATLLTICNATFLADFHFEHTPTPKPVVRAKLRLLPATEQEVSDDNVDAHLTQLVTQSRFDLLQRVFLHLMRTEKLSVFAELPLVDALRSFEDDLLNAASIERAPNPFTCHGHIVRTALGLRIQFATTHAAFLAMEHVLSKREISVARSAAVQNG-TSHCTFVEGKKARVAAQYVLTLTTPIPAFLSVLHTLQRISVSNVQVSSKRPNLVRAPGVTSDLHSKTESDDALKAPWPLLSDLIVPNALGKRKPITANGTAPDYTSEVMSSPLLPNGDVLQFQQNGMSPALAMKISRVPLRTTNDVFPVLQLLRQQLVFNELFQSCVRIESSPPQPGKEGSTKPVEMVLEGSPDFMQLSYYDDSIDDVLSVVVHIASGGQISVVLKTANASPTFCSDPKATQILQTCRSIPLTLYALMTMSARG 579
BLAST of Gchil9130.t1 vs. uniprot
Match: R7QD12_CHOCR (Mediator of RNA polymerase II transcription subunit 1 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QD12_CHOCR) HSP 1 Score: 256 bits (654), Expect = 2.420e-73 Identity = 198/597 (33.17%), Postives = 288/597 (48.24%), Query Frame = 0
Query: 70 ALHIAAAGTPAVSEPSPPDN---QPDLHPLSTVCLPYVRRALYSSLEVLKQAAEARETWAKDATHHLRRIRYDSLLRQNATLDARLSYSICRHLAQTNDPFAPPYFRTLNRLRHLGEHLQAITTHEVTDNNTKTR-------LTVCSASFLADFHFKHSSRSPPEVSAKLRILLSNDQQVIDENADLHLSRLVTASRFDILQRVFANLMRMEKLSALAE--LPLVDALRCFEEDLLQVASMECVT-----------DPFMH-HGHIVRTALGLRIQFSASHAAFLGMEHVLSKCEISVTRGQVIRTDPNAQCKFMHGKKAPVSAQYVLTLTSPIPAFLSVLHTLHRVSLDP--------------MHLHTKGPSLVSVPTASND---------------AYWKGDSEGSGRLSWPSLSHLVIARAVKEQKLSSAKPSSSNNKADRMLSPALPDGSFLHFQQYGTNPAPAMRIKRIPLRTMSDIFPVLQLLRQQLVYNELLLSCVDVNASVEQSKKDAKVRTVEMVPEGSPGFMHFSVYDESINNVLSLVVHITRGGAISVALKTANSGPAWCSDAKATKILRTCRSIPLTLYTLISM 613
ALH A+ + PSP Q LHPLS L VRR L SL LK AA ARE+W L ++ D++L+ ++ + + CR LA T DPFA ++ LR + AIT+ EV D + T LTVC A FLADFHF + V AK R L ++D ++ D + D L+ + +D ++ F NL+ E LSA + L+DALR FE+DL+ E DP HG + R+A GLRI F A LG+E ++ I++TR T N + F K A ++AQYVLT +P+ LSV T+ R++ P LH + P ++D + + D +S P AR V ++K ++PS+ + + + ALP+ ++ F G+N P + I RIPL D+ PVL L+RQQ+V+NEL SC + K + + VE+V +P FM F++YD + +LS+ V I GG ISV+L++++ CSDAKAT IL RSIPL + T++ +
Sbjct: 23 ALHSLASSSGLSRLPSPQPRYLRQASLHPLSRRPLAAVRRELALSLVALKGAAAARESWESPNPDRLLHVKRDTILKTRVIQASKAALAECRRLAATQDPFATKDELAIHSLRAVAVAANAITSEEVPDPASATAKPVAKRILTVCGAKFLADFHFFDAPNDHVNVKAKFRHLTADDAELPDSDIDADFVNLIRNADYDAIKFAFHNLIAKETLSARVSQHISLIDALRGFEDDLISAHHAEVNAPVPSTPNTLDADPARRGHGIVKRSARGLRITFMKGRHALLGVEDGIANRSIAITRTHPTLTS-NGRFHFDQPKMATLAAQYVLTFENPVFVCLSVAQTVERLAGVPPPQPPATATGGSSGRPLHDRNHRTDGRPEEASDKNTCLPSLQELLAPAVFGERDGLNDEEMSNPKKEGPTPAREVVKKKTHWSQPST-----EFIAAAALPNKQYIEFSHSGSNTVPGLAICRIPLCHPKDVLPVLGLIRQQIVFNELFRSCFGSPLYTNPTLKPFQPQPVEVVLCDAPSFMQFNLYDSVVQEILSMAVTIELGGDISVSLQSSSDKTDACSDAKATAILAVSRSIPLAILTILKI 613
BLAST of Gchil9130.t1 vs. uniprot
Match: A0A2P6NG82_9EUKA (Mediator of RNA polymerase II transcription subunit 1 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NG82_9EUKA) HSP 1 Score: 63.5 bits (153), Expect = 7.750e-7 Identity = 48/164 (29.27%), Postives = 80/164 (48.78%), Query Frame = 0
Query: 458 KADRMLSPALPDGSFLHFQQYGTNP-APAMRIKRIPLRTMSDIFPVLQLLRQQLVYNELLLSCVDVNA------SVEQSKKDAKVRTVEMVPEGSPGFMHFSVYDESINNVLSLVVHITRGGAISVALK--TANSGPAWCSDAKATKILRTCRSIPLTLYTLIS 612
KA M + DG H+ G++ +RI RIP ++ + P+LQ+LRQQL+++EL SC + +++Q + + + + SPG + ++ +++ L VHI GG I + L T W S+ A +L CRSIP + L+S
Sbjct: 438 KASSMEKQKVVDGVEHHYVFCGSSVNTSTIRINRIPFHSIHQVLPILQILRQQLMFSELFSSCFEEEGREEPTQAMDQGSNWRQQKQMIEISTESPGTISATLLHPKTLSLICLSVHILPGGLIQIRLLGLTEEVAMQWASELSA--LLAGCRSIPHVVNQLMS 599
BLAST of Gchil9130.t1 vs. uniprot
Match: A0A131Z6B4_RHIAP (Mediator of RNA polymerase II transcription subunit 1 (Fragment) n=6 Tax=Rhipicephalinae TaxID=426437 RepID=A0A131Z6B4_RHIAP) HSP 1 Score: 62.4 bits (150), Expect = 2.460e-6 Identity = 61/243 (25.10%), Postives = 107/243 (44.03%), Query Frame = 0
Query: 369 AQYVLTLTSPIPAFLSVLHTLHRVSLDPMHLHTKGPSLVSVPTASNDAYWKGDSEGSGRLSWPSLSHLVIARAVKEQKLSSAKPSSSNNKADRMLSPALPDGSFLHFQQYGTNPAPAMRIKRIPLRTMSDIFPVLQLLRQQLVYNELLLSCVDVNASVEQSKKDAKVRTVEMVPEGSPGFMHFSVYDESINNVLSLVVHITRGGAISVALKTANSGPAWCSDAKATKILRTCRSIPLTLYTLI 611
A +VL L PIP ++++ +H V+L + T++ P LS +I E KLS++ +DR L+ LPD ++ G+ P + + +P + + +L LRQQL++N L+ SCV S Q+ + + + V + DES+ V + IT ++ + T NS + C+D A+K+++ C SIP+T+ +I
Sbjct: 315 ASFVLKLPKPIPMAVALVRKIHAVTL-----------IECADTSTTQ---------------PLLS--LIINQASEGKLSAS--------SDRGLNVTLPDQQHCYYLLSGSPELPGVMVSGVPFTHPTHVPQILVFLRQQLLFNTLVASCV--RPSSRQNAEMSHMFEVNTTSISNISISFEHPLDESLATVDLNLSEIT---SVKCRIYTLNSDISICTDEYASKVMQRCLSIPVTMRAVI 516 The following BLAST results are available for this feature:
BLAST of Gchil9130.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 4
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Gchil9130.t1 ID=Gchil9130.t1|Name=Gchil9130.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=618bpback to top Annotated Terms
The following terms have been associated with this polypeptide:
|