Gchil9130.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil9130.t1
Unique NameGchil9130.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length618
Homology
BLAST of Gchil9130.t1 vs. uniprot
Match: A0A2V3IN35_9FLOR (Mediator of RNA polymerase II transcription subunit 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN35_9FLOR)

HSP 1 Score: 648 bits (1672), Expect = 4.360e-226
Identity = 352/617 (57.05%), Postives = 443/617 (71.80%), Query Frame = 0
Query:    1 MTDALARQADQAERIHSTQQPQTAREALYRITALLRAVAAPHAFNLSQPHLPTPSTTVPATQTSSRSPAALHIAAAGTPAVSEPSPPDNQPDLHPLSTVCLPYVRRALYSSLEVLKQAAEARETWAKDATHHLRRIRYDSLLRQNATLDARLSYSICRHLAQTNDPFAPPYFRTLNRLRHLGEHLQAITTHEVTDNNTKTRLTVCSASFLADFHFKHSSRSPPEVSAKLRILLSNDQQVIDENADLHLSRLVTASRFDILQRVFANLMRMEKLSALAELPLVDALRCFEEDLLQVASMECVTDPFMHHGHIVRTALGLRIQFSASHAAFLGMEHVLSKCEISVTRGQVIRTDPNAQCKFMHGKKAPVSAQYVLTLTSPIPAFLSVLHTLHRVSLDPMHLHTKGPSLVSVPTASNDAYWKGDSEGSGRLSWPSLSHLVIARAVKEQKLSSAKPSSSNNKADRMLSPALPDGSFLHFQQYGTNPAPAMRIKRIPLRTMSDIFPVLQLLRQQLVYNELLLSCVDVNASVEQSKKDAKVRTVEMVPEGSPGFMHFSVYDESINNVLSLVVHITRGGAISVALKTANSGPAWCSDAKATKILRTCRSIPLTLYTLISMSKRG 617
            MT AL R+A+QAE I ST+ P+TAREALYRITALLR ++ P +FNLS P      TT                              +NQ DLHPLSTVCLPYVRRALYSSLE L+ A +AR+TW +D+T HLRRIR+D+L R +ATLD+RL+ SI R+LA T DPFAPPYF  LN+LRHL E L AIT  EV+ N   T LT+C+A+FLADFHF+H+    P V AKLR+L + +Q+V D+N D HL++LVT SRFD+LQRVF +LMR EKLS  AELPLVDALR FE+DLL  AS+E   +PF  HGHIVRTALGLRIQF+ +HAAFL MEHVLSK EISV R   ++    + C F+ GKKA V+AQYVLTLT+PIPAFLSVLHTL R+S+  + + +K P+LV  P  ++D + K +S+ + +  WP LS L++  A+ ++K  +A  ++ +  ++ M SP LP+G  L FQQ G +PA AM+I R+PLRT +D+FPVLQLLRQQLV+NEL  SCV + +S  Q  K+   + VEMV EGSP FM  S YD+SI++VLS+VVHI  GG ISV LKTAN+ P +CSD KAT+IL+TCRSIPLTLY L++MS RG
Sbjct:    1 MTSALTREAEQAELICSTETPKTAREALYRITALLRTLSTPQSFNLSSP------TTA-----------------------------NNQADLHPLSTVCLPYVRRALYSSLEFLENAVQARDTWNRDSTQHLRRIRHDALTRHHATLDSRLALSISRNLAHTEDPFAPPYFLILNKLRHLAERLLAITNQEVSAN--ATLLTICNATFLADFHFEHTPTPKPVVRAKLRLLPATEQEVSDDNVDAHLTQLVTQSRFDLLQRVFLHLMRTEKLSVFAELPLVDALRSFEDDLLNAASIERAPNPFTCHGHIVRTALGLRIQFATTHAAFLAMEHVLSKREISVARSAAVQNG-TSHCTFVEGKKARVAAQYVLTLTTPIPAFLSVLHTLQRISVSNVQVSSKRPNLVRAPGVTSDLHSKTESDDALKAPWPLLSDLIVPNALGKRKPITANGTAPDYTSEVMSSPLLPNGDVLQFQQNGMSPALAMKISRVPLRTTNDVFPVLQLLRQQLVFNELFQSCVRIESSPPQPGKEGSTKPVEMVLEGSPDFMQLSYYDDSIDDVLSVVVHIASGGQISVVLKTANASPTFCSDPKATQILQTCRSIPLTLYALMTMSARG 579          
BLAST of Gchil9130.t1 vs. uniprot
Match: R7QD12_CHOCR (Mediator of RNA polymerase II transcription subunit 1 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QD12_CHOCR)

HSP 1 Score: 256 bits (654), Expect = 2.420e-73
Identity = 198/597 (33.17%), Postives = 288/597 (48.24%), Query Frame = 0
Query:   70 ALHIAAAGTPAVSEPSPPDN---QPDLHPLSTVCLPYVRRALYSSLEVLKQAAEARETWAKDATHHLRRIRYDSLLRQNATLDARLSYSICRHLAQTNDPFAPPYFRTLNRLRHLGEHLQAITTHEVTDNNTKTR-------LTVCSASFLADFHFKHSSRSPPEVSAKLRILLSNDQQVIDENADLHLSRLVTASRFDILQRVFANLMRMEKLSALAE--LPLVDALRCFEEDLLQVASMECVT-----------DPFMH-HGHIVRTALGLRIQFSASHAAFLGMEHVLSKCEISVTRGQVIRTDPNAQCKFMHGKKAPVSAQYVLTLTSPIPAFLSVLHTLHRVSLDP--------------MHLHTKGPSLVSVPTASND---------------AYWKGDSEGSGRLSWPSLSHLVIARAVKEQKLSSAKPSSSNNKADRMLSPALPDGSFLHFQQYGTNPAPAMRIKRIPLRTMSDIFPVLQLLRQQLVYNELLLSCVDVNASVEQSKKDAKVRTVEMVPEGSPGFMHFSVYDESINNVLSLVVHITRGGAISVALKTANSGPAWCSDAKATKILRTCRSIPLTLYTLISM 613
            ALH  A+ +     PSP      Q  LHPLS   L  VRR L  SL  LK AA ARE+W       L  ++ D++L+      ++ + + CR LA T DPFA      ++ LR +     AIT+ EV D  + T        LTVC A FLADFHF  +      V AK R L ++D ++ D + D     L+  + +D ++  F NL+  E LSA     + L+DALR FE+DL+     E              DP    HG + R+A GLRI F     A LG+E  ++   I++TR     T  N +  F   K A ++AQYVLT  +P+   LSV  T+ R++  P                LH +       P  ++D                + + D      +S P       AR V ++K   ++PS+     + + + ALP+  ++ F   G+N  P + I RIPL    D+ PVL L+RQQ+V+NEL  SC         + K  + + VE+V   +P FM F++YD  +  +LS+ V I  GG ISV+L++++     CSDAKAT IL   RSIPL + T++ +
Sbjct:   23 ALHSLASSSGLSRLPSPQPRYLRQASLHPLSRRPLAAVRRELALSLVALKGAAAARESWESPNPDRLLHVKRDTILKTRVIQASKAALAECRRLAATQDPFATKDELAIHSLRAVAVAANAITSEEVPDPASATAKPVAKRILTVCGAKFLADFHFFDAPNDHVNVKAKFRHLTADDAELPDSDIDADFVNLIRNADYDAIKFAFHNLIAKETLSARVSQHISLIDALRGFEDDLISAHHAEVNAPVPSTPNTLDADPARRGHGIVKRSARGLRITFMKGRHALLGVEDGIANRSIAITRTHPTLTS-NGRFHFDQPKMATLAAQYVLTFENPVFVCLSVAQTVERLAGVPPPQPPATATGGSSGRPLHDRNHRTDGRPEEASDKNTCLPSLQELLAPAVFGERDGLNDEEMSNPKKEGPTPAREVVKKKTHWSQPST-----EFIAAAALPNKQYIEFSHSGSNTVPGLAICRIPLCHPKDVLPVLGLIRQQIVFNELFRSCFGSPLYTNPTLKPFQPQPVEVVLCDAPSFMQFNLYDSVVQEILSMAVTIELGGDISVSLQSSSDKTDACSDAKATAILAVSRSIPLAILTILKI 613          
BLAST of Gchil9130.t1 vs. uniprot
Match: A0A2P6NG82_9EUKA (Mediator of RNA polymerase II transcription subunit 1 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NG82_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 7.750e-7
Identity = 48/164 (29.27%), Postives = 80/164 (48.78%), Query Frame = 0
Query:  458 KADRMLSPALPDGSFLHFQQYGTNP-APAMRIKRIPLRTMSDIFPVLQLLRQQLVYNELLLSCVDVNA------SVEQSKKDAKVRTVEMVPEGSPGFMHFSVYDESINNVLSLVVHITRGGAISVALK--TANSGPAWCSDAKATKILRTCRSIPLTLYTLIS 612
            KA  M    + DG   H+   G++     +RI RIP  ++  + P+LQ+LRQQL+++EL  SC +         +++Q     + + +  +   SPG +  ++      +++ L VHI  GG I + L   T      W S+  A  +L  CRSIP  +  L+S
Sbjct:  438 KASSMEKQKVVDGVEHHYVFCGSSVNTSTIRINRIPFHSIHQVLPILQILRQQLMFSELFSSCFEEEGREEPTQAMDQGSNWRQQKQMIEISTESPGTISATLLHPKTLSLICLSVHILPGGLIQIRLLGLTEEVAMQWASELSA--LLAGCRSIPHVVNQLMS 599          
BLAST of Gchil9130.t1 vs. uniprot
Match: A0A131Z6B4_RHIAP (Mediator of RNA polymerase II transcription subunit 1 (Fragment) n=6 Tax=Rhipicephalinae TaxID=426437 RepID=A0A131Z6B4_RHIAP)

HSP 1 Score: 62.4 bits (150), Expect = 2.460e-6
Identity = 61/243 (25.10%), Postives = 107/243 (44.03%), Query Frame = 0
Query:  369 AQYVLTLTSPIPAFLSVLHTLHRVSLDPMHLHTKGPSLVSVPTASNDAYWKGDSEGSGRLSWPSLSHLVIARAVKEQKLSSAKPSSSNNKADRMLSPALPDGSFLHFQQYGTNPAPAMRIKRIPLRTMSDIFPVLQLLRQQLVYNELLLSCVDVNASVEQSKKDAKVRTVEMVPEGSPGFMHFSVYDESINNVLSLVVHITRGGAISVALKTANSGPAWCSDAKATKILRTCRSIPLTLYTLI 611
            A +VL L  PIP  ++++  +H V+L           +    T++                 P LS  +I     E KLS++        +DR L+  LPD    ++   G+   P + +  +P    + +  +L  LRQQL++N L+ SCV    S  Q+ + + +  V      +         DES+  V   +  IT   ++   + T NS  + C+D  A+K+++ C SIP+T+  +I
Sbjct:  315 ASFVLKLPKPIPMAVALVRKIHAVTL-----------IECADTSTTQ---------------PLLS--LIINQASEGKLSAS--------SDRGLNVTLPDQQHCYYLLSGSPELPGVMVSGVPFTHPTHVPQILVFLRQQLLFNTLVASCV--RPSSRQNAEMSHMFEVNTTSISNISISFEHPLDESLATVDLNLSEIT---SVKCRIYTLNSDISICTDEYASKVMQRCLSIPVTMRAVI 516          
The following BLAST results are available for this feature:
BLAST of Gchil9130.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IN35_9FLOR4.360e-22657.05Mediator of RNA polymerase II transcription subuni... [more]
R7QD12_CHOCR2.420e-7333.17Mediator of RNA polymerase II transcription subuni... [more]
A0A2P6NG82_9EUKA7.750e-729.27Mediator of RNA polymerase II transcription subuni... [more]
A0A131Z6B4_RHIAP2.460e-625.10Mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019680Mediator complex, subunit Med1PFAMPF10744Med1coord: 363..520
e-value: 8.2E-6
score: 25.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1968874..1970727 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9130.t1Gchil9130.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004370_pilon 1968874..1970727 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil9130.t1 ID=Gchil9130.t1|Name=Gchil9130.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=618bp
MTDALARQADQAERIHSTQQPQTAREALYRITALLRAVAAPHAFNLSQPH
LPTPSTTVPATQTSSRSPAALHIAAAGTPAVSEPSPPDNQPDLHPLSTVC
LPYVRRALYSSLEVLKQAAEARETWAKDATHHLRRIRYDSLLRQNATLDA
RLSYSICRHLAQTNDPFAPPYFRTLNRLRHLGEHLQAITTHEVTDNNTKT
RLTVCSASFLADFHFKHSSRSPPEVSAKLRILLSNDQQVIDENADLHLSR
LVTASRFDILQRVFANLMRMEKLSALAELPLVDALRCFEEDLLQVASMEC
VTDPFMHHGHIVRTALGLRIQFSASHAAFLGMEHVLSKCEISVTRGQVIR
TDPNAQCKFMHGKKAPVSAQYVLTLTSPIPAFLSVLHTLHRVSLDPMHLH
TKGPSLVSVPTASNDAYWKGDSEGSGRLSWPSLSHLVIARAVKEQKLSSA
KPSSSNNKADRMLSPALPDGSFLHFQQYGTNPAPAMRIKRIPLRTMSDIF
PVLQLLRQQLVYNELLLSCVDVNASVEQSKKDAKVRTVEMVPEGSPGFMH
FSVYDESINNVLSLVVHITRGGAISVALKTANSGPAWCSDAKATKILRTC
RSIPLTLYTLISMSKRG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019680Mediator_Med1