Gchil9128.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil9128.t1
Unique NameGchil9128.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length801
Homology
BLAST of Gchil9128.t1 vs. uniprot
Match: A0A2V3IN30_9FLOR (Putative pentatricopeptide repeat-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN30_9FLOR)

HSP 1 Score: 909 bits (2350), Expect = 0.000e+0
Identity = 502/771 (65.11%), Postives = 580/771 (75.23%), Query Frame = 0
Query:   42 WRALTLVDGPSWVAAVPIAVADVAPRARARQLRRRGHVEHALRVAGSAGLRFSRDERDVVECLLALLDAERFTAPRERLAAMMDVLHDARADLRAAAYNVVLTACAREAARLTHNSPANAYV-LHIACRMWTQLRRLSSHVHPRSTALMYRICGHCNHLSLARRIRNQTQDPAFAAALGSARSAPSHPSSSELATAAFILCLGMCHKAQEAEQLYFSPHLAHHRTNDRVLSALFRAYVASCAISKAESLIAMFGATFLNVQSCNAFVKQCAQLRLQDTAFAFVNRMASSSTTRFPPPNARTYNLLLRGLSAGTGVEDRHVAADRALLVVNQMQQQNIQPTTVTYNTLIRAFVFRNHTHEALNLYRSMPNPNRITFSHMMQAAANTHDTDLADALLRHLEKVNERPNYSFIKSYLEIVAQTQGIRAAFEETKRLAQRFGNVVVFGDVGSAEAIRMALISACGNVRQLDAAFDALRLQLGGDSRGQLAPLYVSTVLMQVCFMCGEHGRALEVFESLKQAGLKPNFEVYESLIYGLASHVRKTASRETMMEQEHC---DGEEERG----NAMQTVGAVDGTVMESADVPHSSEWIDLIVHLIGEMHATGVARVSRQAAYVYNTVLAAAAAAGNFDLSLQIFNKMTARNNRSLVYLVRDKTNA--KEGV--VFGRETEFPAATVGTYNSMMFAAWKCGLPSFSFEAFDLMLADRAAEPNGATLSLLADVALQEGDMKTERLQKLLHVLDKVPILPESVCKKRVRLRQKLLALRWS 800
            W A+ +++ PS VA VP   A  +PR R+RQLR  G+   A RVA  +GL++SR++ D+VE LL LL ++RF  PR+RL AM+  L  A+ D  AA YNVVL ACAR+AARL   S A + V L  A  +WTQL    + V PRS ALMYRICG C++L LAR IR +T DP  A  +      P  P SSE ATAA+ILCLG C +A EAEQLYFSPHL H R N RVL ALF+AYVAS  ISKAESLIAM+G  FL VQSCNAFVK CAQLRL DTA  FV RMA S +T +PPPNARTYNLLLRGLSAGTGVEDR VAADRALLVV QM+ Q I PTTVTYNTLIRAFVFRN   +AL LYR M  PNRITFSH+M AAA T D  LA  LL HLE++NERPNYSF+KSYL+++AQ  G++AAFE   RLA+RFG+VVVFGDVGSAEA+RMALISACG VR + AAF+AL   L GD  G LAPLYVSTVLMQVC  CGE GRALEVFESLKQAGL+PNFEVYESLIYGLAS+VR+ A RE    QE     DGEEE      + +  V  V G           S+ I LIV LIGEMHA+GVARVSRQAAYVYNTVLAAAAAAG+ +L+LQ+FNKMT  NNR++VY+ R  +    ++G   +F RE EFPAATVGTYNSMMFAAWKCG+PSFSFEAFD+ML+DR+AEPN ATLSLLADVAL+E ++  E LQKLL +LD++PIL + VCKKRVRLRQK+LALRWS
Sbjct:   36 WHAVAVLEAPSSVAVVPATHAP-SPRLRSRQLRLSGNNREAYRVARVSGLQYSRNQHDLVEYLLVLLVSDRFDGPRQRLDAMISALKHAKCDCSAAVYNVVLAACARDAARLGAGSHARSQVVLRTAYHVWTQLTDRFAAVQPRSIALMYRICGDCHNLQLARHIRARTNDPVLANTVAQ----PVPPLSSEHATAAYILCLGKCDRAVEAEQLYFSPHLTHLRANHRVLGALFQAYVASNRISKAESLIAMYGTAFLTVQSCNAFVKHCAQLRLHDTAITFVQRMADSESTAYPPPNARTYNLLLRGLSAGTGVEDRDVAADRALLVVEQMKHQRIHPTTVTYNTLIRAFVFRNQIQQALQLYRRMSTPNRITFSHLMHAAAKTRDIHLAQNLLHHLEQLNERPNYSFMKSYLQLIAQVDGVQAAFEHATRLAERFGHVVVFGDVGSAEAVRMALISACGKVRDVQAAFEALSHNLAGDKGGLLAPLYVSTVLMQVCLACGEPGRALEVFESLKQAGLQPNFEVYESLIYGLASYVRRAAYREWHSAQEGAQRDDGEEELSTVPDDGVAEVEGVAGDADTQQQAAQLSQCISLIVQLIGEMHASGVARVSRQAAYVYNTVLAAAAAAGDLNLALQVFNKMTPTNNRNIVYVARSNSGKGDEDGCDGLFEREVEFPAATVGTYNSMMFAAWKCGVPSFSFEAFDMMLSDRSAEPNAATLSLLADVALEEANVDVEWLQKLLQLLDRMPILSDVVCKKRVRLRQKVLALRWS 801          
BLAST of Gchil9128.t1 vs. uniprot
Match: R7QQS3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQS3_CHOCR)

HSP 1 Score: 701 bits (1810), Expect = 3.110e-240
Identity = 420/819 (51.28%), Postives = 528/819 (64.47%), Query Frame = 0
Query:   45 LTLVDGPSWVAAVPIAVADVAPRARARQLRRRGHVEHALRVAGSAGLRFSRDERDVVECLLALLDAERFTAPRERLAAMMDVLHDARADLRAAAYNVVLTACAREAARLTHNSPANA-YVLHIACRMWTQLRRLSSHVHPRSTALMYRICGHCNHLSLARRIRNQTQDPAFAAALGSARSAPSHPSSSELATAAFILCLGMCHKAQEAEQLYFSPHLAHHRTNDRVLSALFRAYVASCAISKAESLIAMFGATFLNVQSCNAFVKQCAQLRLQDTAFAFVNRMASSSTTRFPPPNARTYNLLLRGLSAGTGVEDRHVAADRALLVVNQMQQQNIQPTTVTYNTLIRAFVFRNHTHEALNLYRSMPNPNRITFSHMMQAAANTHDTDLADALLRHLEKVNERPNYSFIKSYLEIVAQTQGIRAAFEETKRLAQRFGNVVVFGDVGSAEAIRMALISACGNVRQLDAAFDALRLQLGG--DSRGQLAPLYVSTVLMQVCFMCGEHGRALEVFESLKQAGLKPNFEVYESLIYGLASHVRK----------------------TASRETMMEQEHCDGEEERGNAMQTVG-AVDGTV--MESADVPHSSEWIDLIVHLIGEMHATGVARVSRQAAYVYNTVLAAAAAAGNFDLSLQIFNKMTARNNRSLVYLVRD----KTNAKEGV------------------------------VFGRETEFPAATVGTYNSMMFAAWKCGLPSFSFEAFDLMLADRAAEPNGATLSLLADVALQEGD-MKTERLQKLLHVLDKVPILPESVCKKRVRLRQKLLALRWS 800
            +++ +G SWV+ VP       PR+R+R LR  G    A +V   AG   SR E D++E LL LL+ + F  PRERL AM++ L  + +    AA+N++LTACAREA R++ NS      +L +A  +W ++ +    V PR+TALMYRICG C  + LA+ IR Q  DPA   A G   S      SS  ATAAFILCLG C ++ EAEQLYFS + + HR++D VLSALFR+YVAS  ISKAESLI+M+G+ FL V SCNAFVKQCA LRL D+A  FV RM+ ++ T FP PNA+TYNLLLRGLSAGTG EDR VAADRAL+VV+QM+ Q I PTTVTYNTLIR+ VFR+   EAL LYR M +PNRITFSH+MQ AAN  D +LA+ +   L +  ERPNY F KSYLE +A+ +G  AAF E  R+++ FG+ +VFGDVGS EAIRMALISACG V  L  AF+AL L L    ++ G LAPLYV+TVLMQVC  C   GRALEVF+S++ AGLKPNFEVYESLI+GL S+VR                       T +  T+   E+   +  R  A Q+   + DG    + S +V  ++E + + V L+ EMHA G  R  RQAAYVYNT++AAAAA  +F+L+LQIFNKM+ RNN+ +VY  +D       A++ V                              +F  E EFP ATVGTYNSM+ AAWKCG P +SFE F LM  DR  EPN ATLSLLAD+AL E   +  +  +KLL  LD + IL   V +KR+RLR+KLLALRWS
Sbjct:   39 MSVKEGKSWVSMVPQKGLQ-HPRSRSRDLRFAGDARAAHKVLLRAGAHRSRHEADLIELLLVLLNTDEFKGPRERLEAMVNALWKSPSSKPKAAFNILLTACAREAGRVSDNSSVKRDVILKVAKSVWAEMLQTVKRVDPRNTALMYRICGECKDIELAKSIREQINDPAIFPAGGDGASL-----SSVDATAAFILCLGKCGRSGEAEQLYFSGYSSAHRSSDMVLSALFRSYVASNRISKAESLISMYGSGFLTVLSCNAFVKQCAALRLHDSALEFVGRMSRTNETGFPGPNAQTYNLLLRGLSAGTGTEDRDVAADRALVVVDQMKAQGIAPTTVTYNTLIRSLVFRHQMKEALELYRGMDSPNRITFSHLMQGAANIPDLELAEDIFASLVQAGERPNYGFCKSYLETIAKLKGTDAAFTEATRVSEEFGDALVFGDVGSHEAIRMALISACGKVGDLSKAFEALDLPLASHRNTVGNLAPLYVATVLMQVCLQCHAPGRALEVFDSVRGAGLKPNFEVYESLIHGLCSYVRFRGVTEAFHADIENENDKSLGDWTPNSHTLAPAENSSSDRGRHEAAQSFEQSEDGRQDRVPSGNV-EANEAVRIAVELLREMHANGEGRAIRQAAYVYNTMIAAAAAINDFELALQIFNKMSNRNNQGVVYFSKDILGGVDEAQQDVGMSSEPPGGNRRPDEDGGGRARLAALASTGMFDSEYEFPMATVGTYNSMIDAAWKCGEPWYSFEVFQLMQMDRITEPNVATLSLLADIALSESHAVDADAQRKLLKELDAMAILSGDVSQKRIRLRKKLLALRWS 850          
BLAST of Gchil9128.t1 vs. uniprot
Match: A0A2V3IN37_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN37_9FLOR)

HSP 1 Score: 232 bits (591), Expect = 3.710e-68
Identity = 121/170 (71.18%), Postives = 145/170 (85.29%), Query Frame = 0
Query:  635 MHATGVARVSRQAAYVYNTVLAAAAAAGNFDLSLQIFNKMTARNNRSLVYLVRDKTNA--KEGV--VFGRETEFPAATVGTYNSMMFAAWKCGLPSFSFEAFDLMLADRAAEPNGATLSLLADVALQEGDMKTERLQKLLHVLDKVPILPESVCKKRVRLRQKLLALRWS 800
            MHA+GVARVSRQAAYVYNTVLAAAA A + +L+LQ+FNKMT  NNR++VY+ R  +    ++G   +F RE EFPAATVGTYNSMMFAAWKCG+PSFSFEAFD+ML+DR+AEPN ATLSLLADVAL+E ++  E LQKLL +LD++PIL + VCKKRVRLRQK+LALRWS
Sbjct:    1 MHASGVARVSRQAAYVYNTVLAAAATAVDLNLALQVFNKMTPTNNRNIVYVARSNSGKGDEDGFDGLFEREVEFPAATVGTYNSMMFAAWKCGVPSFSFEAFDMMLSDRSAEPNAATLSLLADVALEEANVDVEWLQKLLQLLDRMPILSDVVCKKRVRLRQKVLALRWS 170          
The following BLAST results are available for this feature:
BLAST of Gchil9128.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IN30_9FLOR0.000e+065.11Putative pentatricopeptide repeat-containing prote... [more]
R7QQS3_CHOCR3.110e-24051.28Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3IN37_9FLOR3.710e-6871.18Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 611..791
e-value: 5.3E-11
score: 44.4
coord: 294..482
e-value: 4.9E-24
score: 87.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 488..597
e-value: 5.5E-8
score: 34.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 649..677
e-value: 0.0018
score: 16.3
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 532..570
e-value: 5.9E-4
score: 19.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 650..677
e-value: 0.059
score: 13.6
coord: 711..736
e-value: 0.31
score: 11.4
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 379..423
e-value: 2.6E-7
score: 30.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 527..561
score: 8.506026
NoneNo IPR availablePANTHERPTHR47938RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATEDcoord: 68..762

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1962494..1964896 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9128.t1Gchil9128.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004370_pilon 1962494..1964896 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil9128.t1 ID=Gchil9128.t1|Name=Gchil9128.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=801bp
MLRTPLNRASRSAITVALRARTVQRLRCSQADASQPPPTTAWRALTLVDG
PSWVAAVPIAVADVAPRARARQLRRRGHVEHALRVAGSAGLRFSRDERDV
VECLLALLDAERFTAPRERLAAMMDVLHDARADLRAAAYNVVLTACAREA
ARLTHNSPANAYVLHIACRMWTQLRRLSSHVHPRSTALMYRICGHCNHLS
LARRIRNQTQDPAFAAALGSARSAPSHPSSSELATAAFILCLGMCHKAQE
AEQLYFSPHLAHHRTNDRVLSALFRAYVASCAISKAESLIAMFGATFLNV
QSCNAFVKQCAQLRLQDTAFAFVNRMASSSTTRFPPPNARTYNLLLRGLS
AGTGVEDRHVAADRALLVVNQMQQQNIQPTTVTYNTLIRAFVFRNHTHEA
LNLYRSMPNPNRITFSHMMQAAANTHDTDLADALLRHLEKVNERPNYSFI
KSYLEIVAQTQGIRAAFEETKRLAQRFGNVVVFGDVGSAEAIRMALISAC
GNVRQLDAAFDALRLQLGGDSRGQLAPLYVSTVLMQVCFMCGEHGRALEV
FESLKQAGLKPNFEVYESLIYGLASHVRKTASRETMMEQEHCDGEEERGN
AMQTVGAVDGTVMESADVPHSSEWIDLIVHLIGEMHATGVARVSRQAAYV
YNTVLAAAAAAGNFDLSLQIFNKMTARNNRSLVYLVRDKTNAKEGVVFGR
ETEFPAATVGTYNSMMFAAWKCGLPSFSFEAFDLMLADRAAEPNGATLSL
LADVALQEGDMKTERLQKLLHVLDKVPILPESVCKKRVRLRQKLLALRWS
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat