Gchil9119.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil9119.t1
Unique NameGchil9119.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length347
Homology
BLAST of Gchil9119.t1 vs. uniprot
Match: A0A2V3IQV6_9FLOR (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQV6_9FLOR)

HSP 1 Score: 308 bits (789), Expect = 1.740e-99
Identity = 159/314 (50.64%), Postives = 204/314 (64.97%), Query Frame = 0
Query:    1 MSFAHASLALVSINIFLLIVAVYWTATSWQQLHHVENLPHWTRQRCIIRSAQLSFRNQLYRNEFEVTNFTMANWPDPIPPTIAYRYGTPVYNQTLAQASAFQRTLTAPRIAPCWIFPWSVAFMSPPYPAQLAYTVSMTPVHNAPTKSQRQTAIVSTVFTGITAAFLLILLCAVMCLSP--HLDSSLGTINLPNAPSPIVDSLSETEINLLCKTASFANSASVDVCAICLEDEIKINAQLPCGHCFHRRCIITWLQRGNYKCPLCNLALTRDLIHPAMCNNEH-----SCGCYSRQNDSAPLSASVERTVGPRAP 307
            MSFA  SLAL+S+NIFLLI+AVYWTAT+ QQL+HV++LP W  + C IRS  ++ R++ YRNEF V NF+    PDPIPPT+AYRYG+PVYNQT  QA AF R  +      CW++PW    + PPYP +L YTVS++PV NAPTKSQ++TA VS +FT ITA FL ILLC V+ LSP   +++    +   +  S     LS + IN LCK+ SF  +AS+D C ICLEDE+ ++ QLPC H FHR CI  WL RGN  CPLCNL LT D++ P   + +        G     +  +  S S E T  P +P
Sbjct:    1 MSFARISLALISVNIFLLIIAVYWTATTRQQLNHVKSLPPWYPRTCTIRSHTITSRDRQYRNEFLVFNFSRGTDPDPIPPTVAYRYGSPVYNQTQRQARAFSRKFSLNSPESCWLYPWDYK-LQPPYPTRLRYTVSLSPVTNAPTKSQKETATVSVIFTAITATFLFILLCTVLLLSPVDDIEAINARLEAQHDQSSDAHHLSHSTINRLCKSISFEKTASIDACPICLEDEVPVDVQLPCAHSFHRGCITAWLSRGNINCPLCNLTLTADMVPPTSADYDPLTDYGGSGAQDNSDSHSDSSESAETTQVPHSP 313          
BLAST of Gchil9119.t1 vs. uniprot
Match: A0A6G0X2M8_9STRA (RING-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X2M8_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.300e-7
Identity = 36/98 (36.73%), Postives = 50/98 (51.02%), Query Frame = 0
Query:  188 NLPNAPSPIVDSLSETEINLLCKTASFANSASV----------DVCAICLEDEIKINAQLPCGHCFHRRCIITWLQRGNY-KCPLCNLA---LTRDLI 271
            N+ ++   +  ++S  E+ ++    SF    SV          D C ICL D     A LPCGHCFHR C+ TW+  GN  KCPLC  +   +T+D I
Sbjct:   50 NVASSIDGLSPAVSRKEVKMITLVESFLEVPSVRAPLLPQLFQDTCTICLNDLNVSTAVLPCGHCFHRDCVRTWI--GNVRKCPLCRQSTSSVTKDGI 145          
BLAST of Gchil9119.t1 vs. uniprot
Match: A0A7S3EBS5_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EBS5_9RHOD)

HSP 1 Score: 62.0 bits (149), Expect = 3.370e-7
Identity = 76/276 (27.54%), Postives = 106/276 (38.41%), Query Frame = 0
Query:   51 AQLSFRNQLYRNEFEVTNFTMANWPDPIPPTIAYRYGTPVYNQT---LAQASAFQRTLTAPRIAPCWIFPWSV---AFMSPPYPAQLAYTVSMTPVHNAPTKSQRQTAIVSTVFTGITAAFLLILLCAVMCLSPHLDSSLGTINLPNAPS------PIV-----DSLSETEINLLCKT--ASFANSASVDVCAICLE--DEIKINAQLPCGHCFHRRCIITWLQRGNYKCPLCN---------LALTRDLIHPAMCNNEHSCGCYSRQNDSAPLSA 296
             Q S  ++LYR  F VT        D     +AYRYG+P+YNQT     Q + F    T      C++ P +      MSP Y    A ++                 +++  F  I  +      C V  +   +    G  N P+ PS      P V     D  S+ E+  + K   AS ++      CAICL+  D  +   +L C H +H RC+  WL RG  +CPLCN         L    D           S    S   DS PL+A
Sbjct:   52 TQDSSGDRLYRCNFNVTGIDA----DEDLSRLAYRYGSPIYNQTETMAEQCAGFMNNST------CYVDPDAADDYLSMSPAYVVDNATSL----------------LVLANTFAIIAGS------CLVGFVVLAIWHRRGRSNRPDEPSEDEENPPAVYTHRKDKFSKGEVQDILKLFKASVSSLQEDFSCAICLDSADRKQQYVRLDCKHEYHSRCLRLWLSRGGRRCPLCNREIEMQEKDLESNDDYQSEVQTTRGQSGTLQSSMTDSQPLTA 295          
BLAST of Gchil9119.t1 vs. uniprot
Match: A0A7S4A164_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A164_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.810e-6
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 0
Query:  221 DVCAICLEDEI--KINAQLPCGHCFHRRCIITWLQRGNYKCPLCNLALTRDLIHPAMCNNEHS 281
            + C ICLED +  ++ A+LPCGH FH+ C++ WL R +  CP+C   L  D +       EH+
Sbjct:   40 ECCTICLEDHVPGELAARLPCGHLFHKDCVVEWLSR-HCVCPVCRYELPTDSVVYERTRREHN 101          
BLAST of Gchil9119.t1 vs. uniprot
Match: A0A2R7X373_ONCFA (RING-type domain-containing protein n=1 Tax=Oncopeltus fasciatus TaxID=7536 RepID=A0A2R7X373_ONCFA)

HSP 1 Score: 59.3 bits (142), Expect = 4.880e-6
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 0
Query:  223 CAICLEDEIKINAQ---LPCGHCFHRRCIITWLQRGNYKCPLC 262
            CAICL D+ K+  +   LPCGH FH +CI+ WLQR N+ CP+C
Sbjct:  525 CAICL-DKYKVGVEICGLPCGHNFHEKCILIWLQRDNHHCPIC 566          
BLAST of Gchil9119.t1 vs. uniprot
Match: UPI001EEBAECF (E3 ubiquitin-protein ligase RNF103-like n=1 Tax=Daphnia pulicaria TaxID=35523 RepID=UPI001EEBAECF)

HSP 1 Score: 56.6 bits (135), Expect = 6.380e-6
Identity = 24/43 (55.81%), Postives = 29/43 (67.44%), Query Frame = 0
Query:  223 CAICLEDEIKINAQ---LPCGHCFHRRCIITWLQRGNYKCPLC 262
            CAICL D+ ++      LPCGH FHR CI+ WLQR N+ CP C
Sbjct:  134 CAICL-DKYRVAVDVCGLPCGHQFHRNCIMVWLQRDNHHCPTC 175          
BLAST of Gchil9119.t1 vs. uniprot
Match: A0A7J7CND6_TRIWF (RING-type domain-containing protein n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CND6_TRIWF)

HSP 1 Score: 56.6 bits (135), Expect = 8.930e-6
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 0
Query:  214 FANSASVDVCAICLEDE---IKINAQLPCGHCFHRRCIITWLQRGNYKCPLC 262
            F +S  V+ C ICLE+    +K+ A++PCGH FHR CI+ WL+  ++ CPLC
Sbjct:  156 FEDSCGVNKCVICLEESLVGVKV-ARMPCGHVFHRDCIVRWLET-SHLCPLC 205          
The following BLAST results are available for this feature:
BLAST of Gchil9119.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3IQV6_9FLOR1.740e-9950.64RING-type domain-containing protein n=1 Tax=Gracil... [more]
A0A6G0X2M8_9STRA2.300e-736.73RING-type domain-containing protein n=1 Tax=Aphano... [more]
A0A7S3EBS5_9RHOD3.370e-727.54Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S4A164_9STRA1.810e-639.68Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2R7X373_ONCFA4.880e-655.81RING-type domain-containing protein n=1 Tax=Oncope... [more]
UPI001EEBAECF6.380e-655.81E3 ubiquitin-protein ligase RNF103-like n=1 Tax=Da... [more]
A0A7J7CND6_TRIWF8.930e-648.08RING-type domain-containing protein n=1 Tax=Tripte... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 223..262
e-value: 3.8E-7
score: 39.8
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 222..263
e-value: 3.7E-9
score: 36.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 223..263
score: 12.25323
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 200..272
e-value: 6.3E-13
score: 49.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 313..332
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 295..346
NoneNo IPR availablePANTHERPTHR22765RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAININGcoord: 99..263
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 152..180
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..26
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 27..151
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 181..346
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 222..269
NoneNo IPR availableTMHMMTMhelixcoord: 4..26
NoneNo IPR availableTMHMMTMhelixcoord: 152..174

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1940554..1941594 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9119.t1Gchil9119.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004370_pilon 1940554..1941594 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil9119.t1 ID=Gchil9119.t1|Name=Gchil9119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=347bp
MSFAHASLALVSINIFLLIVAVYWTATSWQQLHHVENLPHWTRQRCIIRS
AQLSFRNQLYRNEFEVTNFTMANWPDPIPPTIAYRYGTPVYNQTLAQASA
FQRTLTAPRIAPCWIFPWSVAFMSPPYPAQLAYTVSMTPVHNAPTKSQRQ
TAIVSTVFTGITAAFLLILLCAVMCLSPHLDSSLGTINLPNAPSPIVDSL
SETEINLLCKTASFANSASVDVCAICLEDEIKINAQLPCGHCFHRRCIIT
WLQRGNYKCPLCNLALTRDLIHPAMCNNEHSCGCYSRQNDSAPLSASVER
TVGPRAPAQPVAQHHLSSISSRSASSAANAAAPQQHAAAPQPTGAT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD