Gchil9088.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil9088.t1
Unique NameGchil9088.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length210
Homology
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BLAST of Gchil9088.t1 vs. uniprot
Match: A0A2V3J6K5_9FLOR (MDS1 and EVI1 complex locus protein EVI1-A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6K5_9FLOR)

HSP 1 Score: 68.9 bits (167), Expect = 6.840e-11
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 0 
Query:   67 PFSLPP-LAKYTCASDSCAAQFDSLGALRNHERKAHRKPTTHECNV 111
            P   PP L ++TC  D CAAQFDS+ AL NHERK HRKPT H+CNV
Sbjct:   51 PMQSPPSLTRFTCGVDGCAAQFDSVPALHNHERKVHRKPTVHQCNV 96
The following BLAST results are available for this feature:
BLAST of Gchil9088.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J6K5_9FLOR6.840e-1165.22MDS1 and EVI1 complex locus protein EVI1-A n=1 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 76..101
e-value: 4.4
score: 16.3
coord: 136..159
e-value: 0.039
score: 23.1
coord: 107..130
e-value: 0.021
score: 24.0
coord: 165..188
e-value: 0.43
score: 19.6
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 107..130
e-value: 0.0096
score: 16.3
coord: 137..159
e-value: 4.2E-4
score: 20.6
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 78..101
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 109..130
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 138..159
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 167..188
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 136..164
score: 10.491625
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 165..188
score: 8.787411
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 76..106
score: 9.473253
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 107..135
score: 11.281384
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 71..129
e-value: 1.0E-7
score: 33.9
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 130..166
e-value: 4.5E-5
score: 25.3
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 167..191
e-value: 3.8E-5
score: 25.3
NoneNo IPR availablePANTHERPTHR24404ZINC FINGER PROTEINcoord: 75..185
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 43..60
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..60
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 61..209
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 27..42
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..26
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 81..127
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 115..171

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1545387..1546097 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9088.t1Gchil9088.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004370_pilon 1545387..1546097 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil9088.t1 ID=Gchil9088.t1|Name=Gchil9088.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=210bp
MASSFRRISVRDLLNPPYGSGSSEANTAAAATAAAAATAAAAAAAAAAAA
SSSSSAGARARSMTADPFSLPPLAKYTCASDSCAAQFDSLGALRNHERKA
HRKPTTHECNVCRATFSNNANKNKHIRAVHEGRKKAKCGLCNIHFPYKDG
LQRHIRMVHQQIRPHACTYCKLQFKTKSHLTKHCMTIHKHLYREVHVYPT
PQSSSWRGT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf