Gchil9080.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil9080.t1
Unique NameGchil9080.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length172
Homology
BLAST of Gchil9080.t1 vs. uniprot
Match: A0A2V3IN17_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN17_9FLOR)

HSP 1 Score: 139 bits (351), Expect = 5.760e-39
Identity = 77/169 (45.56%), Postives = 104/169 (61.54%), Query Frame = 0
Query:    3 TSQSVFQNVTSPWMQSAYLDEVMEESEEIPLDDVKDQIFDSEQHVEVKDARKEEXXXXXXXXXXXXXXXADRAMDKLEDERFRLCRKYFVVGCFGLPLLLFVNVIYFMDDFRSGSGSFRTKKFLFLSLIVGVFELCLWILWFTVFQIVDDGTFESFSIYYSNQPIGYLV 171
            T++SVF    +PWM+SA +    +   +       D I      + VKDA KE+                 R +D++E++RF+ CR YF+VGCFGLPLLLFVNVI+F +DF + SGSFR + +L+LS+IVG+ +  LWILWFT F+IVD  TF+  SIY S  P GYLV
Sbjct:   11 TTRSVFHEGVTPWMRSARV----QAQNDAQRASGGDGIHQLPAPILVKDAYKEDLQHTEHARKLELEQEEARIVDQIEEQRFKHCRMYFIVGCFGLPLLLFVNVIHFCEDFNAESGSFRIRTYLWLSVIVGLLQSFLWILWFTAFRIVDSITFDLLSIYNSTVPFGYLV 175          
BLAST of Gchil9080.t1 vs. uniprot
Match: R7QFX2_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFX2_CHOCR)

HSP 1 Score: 85.9 bits (211), Expect = 2.040e-17
Identity = 38/94 (40.43%), Postives = 64/94 (68.09%), Query Frame = 0
Query:   73 DRAMDKLEDERFRLCRKYFVVGCFGLPLLLFVNVIYFMDDFRSGSGSFRTKKFLFLSLIVGVFELCLWILWFTVFQIV-DDGTFESFSIYYSNQ 165
            ++ + + E+E    CR +F +GCFGLPLL FV+V Y++   R    +F+ KK+++LSL+VG+ ++ +WILW  VFQ++ DD + +S +I   N+
Sbjct:  134 EQEIARWEEENLPRCRLFFYIGCFGLPLLHFVSVYYYLRQLRDQDPNFKIKKYVYLSLLVGIIQVFVWILWIVVFQLLRDDDSLKSINILNFNE 227          
BLAST of Gchil9080.t1 vs. uniprot
Match: A0A183GWU0_HELPZ (Gamma-secretase subunit PEN-2 n=1 Tax=Heligmosomoides polygyrus TaxID=6339 RepID=A0A183GWU0_HELPZ)

HSP 1 Score: 53.1 bits (126), Expect = 2.650e-6
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 0
Query:   86 LCRKYFVVGCFGLPLLLFVNVIYFMDDFRSGSGSFRT-KKFLFLSLIVGVFELCLWILWFTVFQ 148
            LCRKYF+VG FGLP L   N I+F    R  S +  T +K++ LS I  +F L +  +W T+FQ
Sbjct:   14 LCRKYFIVGLFGLPFLWLRNTIWFFGFLRPRSSATNTNRKYVTLSAIGAIFWLIVICVWETIFQ 77          
BLAST of Gchil9080.t1 vs. uniprot
Match: A0A2G8K6C6_STIJA (Gamma-secretase subunit PEN-2 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8K6C6_STIJA)

HSP 1 Score: 52.8 bits (125), Expect = 5.090e-6
Identity = 27/74 (36.49%), Postives = 42/74 (56.76%), Query Frame = 0
Query:   82 ERFRLCRKYFVVGCFGLPLLLFVNVIYFMDDFRSG------SGSFRTKKFLFLSLIVGVFELCLWILWFTVFQI 149
            E+  LCRKYF++GCF LP + F+N ++F   F+ G          + +K+L  SLI  +    + I W T+FQ+
Sbjct:   11 EKLELCRKYFIIGCFALPFMWFINFVWF---FKEGFMRPTYDEQKQIRKYLIWSLIGAILWTIVIITWVTIFQL 81          
The following BLAST results are available for this feature:
BLAST of Gchil9080.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IN17_9FLOR5.760e-3945.56Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QFX2_CHOCR2.040e-1740.43Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A183GWU0_HELPZ2.650e-645.31Gamma-secretase subunit PEN-2 n=1 Tax=Heligmosomoi... [more]
A0A2G8K6C6_STIJA5.090e-636.49Gamma-secretase subunit PEN-2 n=1 Tax=Stichopus ja... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 46..78
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 125..150
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..89
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 111..124
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 90..110
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 151..171
NoneNo IPR availableTMHMMTMhelixcoord: 91..110
NoneNo IPR availableTMHMMTMhelixcoord: 125..147
IPR019379Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunitPFAMPF10251PEN-2coord: 80..152
e-value: 1.3E-11
score: 44.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1424889..1425404 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9080.t1Gchil9080.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004370_pilon 1424889..1425404 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil9080.t1 ID=Gchil9080.t1|Name=Gchil9080.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=172bp
MDTSQSVFQNVTSPWMQSAYLDEVMEESEEIPLDDVKDQIFDSEQHVEVK
DARKEEEREAERERQLELELEADRAMDKLEDERFRLCRKYFVVGCFGLPL
LLFVNVIYFMDDFRSGSGSFRTKKFLFLSLIVGVFELCLWILWFTVFQIV
DDGTFESFSIYYSNQPIGYLV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019379Gamma_Secretase_Asp_P_PEN2