Gchil9022.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil9022.t1
Unique NameGchil9022.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length686
Homology
BLAST of Gchil9022.t1 vs. uniprot
Match: A0A2V3IXP8_9FLOR (Pre-mRNA 3'-end-processing factor FIP1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXP8_9FLOR)

HSP 1 Score: 466 bits (1199), Expect = 5.140e-153
Identity = 318/495 (64.24%), Postives = 343/495 (69.29%), Query Frame = 0
Query:  194 FDVIVNCDEGDVASRPMSTSFGSIGKVRLGTNKWQRPGYVPPERVIGNATQGAARAGGLLSMLPAPTMQVGNAQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDGNKNQGANPPRNVSQNAPKPPINRPHENRNRHGGPDQAGGGANNKLRHQPAMLRGVMGLPPPGPMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPEHXXXXXXXXXXXXPFNPKDANRNSRGFPGGLPGYPFMPGNQPNENMF--LYP-----------GMPNFGPVGMPNAISQPGMGRVDPNNRGFPGQMNLTPGQPPQDKV-NKISPARHMGQEDGQNMDGRRRSGQGHQNSRFGNXXXXXSKAHQGRHEHD-RRQRWGENRGHMDRRQDFERHGQEGGHGQGRRGYDXXXXXXXNQDRRRYNDGREDGYDNSRRRGGNYDGAGRSD-RRDFDRDRERGRDYRKRQSS 672
            FDVI+N D+ DVASRP +TSFGSIGKVRLGTNKWQRPGYVPPERVIGN++QGAAR GGLLSMLP PTMQVGNAQKSVYDLEIGKLTEKPWLDAKAD+TDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDGNK Q  N  R V+ +  KP   + H  R R  G DQA    N KL  QP M       PPPG M XXXXXXXXXXX           XXXXXXXXXXXX                   PF+P D     RGF    P YP M   Q NENM   ++P           GMP      MP  +  PGMGR D   RGFPGQM +   Q PQDK  ++ISP RH  Q++ QN DGRRRSGQGHQ+SRFGN      K HQGRH+HD RRQRW +NRGH DRRQDF+RHG +GGHG GR GY XXXXXXX   RRR+ND RE+GYDN RRRGG YDG   SD RRDFDRDRERGRDYRKR SS
Sbjct:  159 FDVILNVDDADVASRPANTSFGSIGKVRLGTNKWQRPGYVPPERVIGNSSQGAARTGGLLSMLPTPTMQVGNAQKSVYDLEIGKLTEKPWLDAKADLTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDGNKTQAGNTVRTVNPSPVKPSQTQQHAPRGRPTGQDQAIAAPNTKLPQQPPM-------PPPGMMPXXXXXXXXXXXMPNIPGNMRNPXXXXXXXXXXXXF------------------PFHPSDPAGKGRGFTPPFPSYPPMQNGQRNENMKNNMFPFXXXXXXXXGMGMP------MPGTVPPPGMGRGDGTGRGFPGQMAMGNNQQPQDKHGSRISPGRHGPQDENQNTDGRRRSGQGHQSSRFGNAQGAQMK-HQGRHDHDGRRQRWVDNRGHGDRRQDFDRHGGDGGHG-GRXGYXXXXXXXXXXXRRRWNDNREEGYDN-RRRGGGYDGQRMSDNRRDFDRDRERGRDYRKRPSS 619          
BLAST of Gchil9022.t1 vs. uniprot
Match: R7QHW7_CHOCR (Fip1 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHW7_CHOCR)

HSP 1 Score: 150 bits (380), Expect = 9.180e-36
Identity = 70/96 (72.92%), Postives = 81/96 (84.38%), Query Frame = 0
Query:  239 IGNATQGAARAGGLLSMLPAPTMQVGNAQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDGNKNQGA 334
            +GN  Q   RAGG+LSMLP PTMQ+G +QKSVYD+EIGK TEKPWL+  AD++DYFNYGF EE+WK+YCERQ QMRLE SMLAKIKTVDGNK+  A
Sbjct:    1 MGNTMQSGGRAGGMLSMLPTPTMQIGVSQKSVYDMEIGKQTEKPWLERGADLSDYFNYGFNEESWKMYCERQMQMRLEDSMLAKIKTVDGNKSVSA 96          
BLAST of Gchil9022.t1 vs. uniprot
Match: A0A6T6N6Z9_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A6T6N6Z9_9RHOD)

HSP 1 Score: 132 bits (332), Expect = 2.050e-31
Identity = 73/130 (56.15%), Postives = 85/130 (65.38%), Query Frame = 0
Query:  206 ASRPMSTSFGSIGKVRLGTNKWQRPGYVPPE-RVIGNATQGAARAGGLLSMLPAPTMQVGNA-----QKSVYD---LEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTV 326
            AS  + T  G +G     TN+WQRPG V     V+G+       +GGLLSMLP PT+          QKSVY+   LEI KL EKPW +  AD+T+YFNYGFTEETWKLYCERQ QMRLE +MLAKIKTV
Sbjct:   71 ASGNIDTIGGGVGVKFGATNRWQRPGVVSGSGNVMGSGVXXXXXSGGLLSMLPVPTLNQSGIHGVTQQKSVYEFKMLEISKLAEKPWRERGADITEYFNYGFTEETWKLYCERQLQMRLESTMLAKIKTV 200          
BLAST of Gchil9022.t1 vs. uniprot
Match: A0A5J4Z2U3_PORPP (Pre-mRNA 3'-end-processing factor FIP1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2U3_PORPP)

HSP 1 Score: 134 bits (336), Expect = 1.430e-29
Identity = 71/132 (53.79%), Postives = 85/132 (64.39%), Query Frame = 0
Query:  203 GDVASRPMSTSFGSIGKVRLGTNKWQRPGYVPPERVIGNATQGA---ARAGGLLSMLPAPTMQVGNAQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDGNKN 331
            GDVA+ P +    S+ K   G NKWQRPG   P    G    G    A   GLLSMLP PT+ +    +SVYD+EIG+L EKPW +  AD+T+YFNYGFTEETWK+YCERQ QMRLE +  AKIKT    +N
Sbjct:  111 GDVAADPNAPRGASV-KFAAGVNKWQRPGNAAPGGASGAMPGGVXXXAAPPGLLSMLPTPTVNMPLHARSVYDIEIGRLAEKPWRERGADITEYFNYGFTEETWKVYCERQMQMRLESAGTAKIKTQAATEN 241          
BLAST of Gchil9022.t1 vs. uniprot
Match: A0A1X6PAB0_PORUM (Fip1 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PAB0_PORUM)

HSP 1 Score: 126 bits (316), Expect = 1.160e-26
Identity = 60/79 (75.95%), Postives = 67/79 (84.81%), Query Frame = 0
Query:  250 GGLLSMLPAPTMQVGNAQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDG 328
            G +L+MLP PTM VG  Q+SVYDLEIGKL EKPW D  AD+T+YFNYGFTEETW+LYCERQ QMRLE SMLAKIK +DG
Sbjct:  310 GNILAMLPTPTMNVGANQRSVYDLEIGKLPEKPWRDRGADITEYFNYGFTEETWRLYCERQMQMRLEASMLAKIK-IDG 387          
BLAST of Gchil9022.t1 vs. uniprot
Match: M2W1X7_GALSU (Fip1 domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W1X7_GALSU)

HSP 1 Score: 97.8 bits (242), Expect = 6.130e-19
Identity = 62/172 (36.05%), Postives = 87/172 (50.58%), Query Frame = 0
Query:  201 DEGDVASRPMSTSFGSIGKVRLGTNK-----------WQRPGYVPPER--VIGNATQGAARAGGLLSMLPAPTMQVGNAQK--SVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDGNKNQGANPPRNV-SQNAPKPPINRPHENR 356
            D+ ++   P ST +G  G    G +K           WQRPGY       ++G+     +R G  LS++P P      A    SV++ EI  L EKPW +  A+++DYFNYGFTE+TW+ YC RQ+ MRL    L  I+T+D        P  N+ S N P   + R  +NR
Sbjct:   51 DDVNIVLEPSSTYYG--GDTSTGDSKGLFVGGTTTRHWQRPGYSSTAEGGIVGSGVSAYSRGGVDLSLVPKPPTDFPGAHVDYSVFENEIDSLEEKPWREKGAELSDYFNYGFTEDTWREYCRRQQMMRLYSQSLMPIRTLDSG-----GPLHNIDSPNEPSRKVPRGQQNR 215          
BLAST of Gchil9022.t1 vs. uniprot
Match: A0A3S3P8U4_9ACAR (Pre-mRNA 3'-end-processing factor FIP1 n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3P8U4_9ACAR)

HSP 1 Score: 94.0 bits (232), Expect = 2.330e-16
Identity = 54/116 (46.55%), Postives = 69/116 (59.48%), Query Frame = 0
Query:  203 GDVASR-PMSTSFGSIGKVRLGTNKWQRPGYVPPERVIGNATQGAARAGGLLSMLPAPTMQVGNAQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEV 317
            GD+ S  P S+S+ S   V L   K + P + P     G  T  A+ A G  S L    + + N   S+YDL +  L EKPW    AD+TDYFNYGFTEETWK+YCERQK++RLE+
Sbjct:  109 GDIKSTTPPSSSYNSYAPVNLNIGK-RGPAFGPG----GQVTNAASAAKGKTSGLDIDAVGLYNGG-SIYDLNLDALEEKPWRKPGADITDYFNYGFTEETWKIYCERQKKLRLEL 218          
BLAST of Gchil9022.t1 vs. uniprot
Match: A0A3S3P8L1_9ACAR (Pre-mRNA 3'-end-processing factor FIP1 n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3P8L1_9ACAR)

HSP 1 Score: 91.7 bits (226), Expect = 3.150e-16
Identity = 50/112 (44.64%), Postives = 67/112 (59.82%), Query Frame = 0
Query:  206 ASRPMSTSFGSIGKVRLGTNKWQRPGYVPPERVIGNATQGAARAGGLLSMLPAPTMQVGNAQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEV 317
            ++ P S+S+ S   V L   K + P + P     G  T  A+ A G  S L    + + N   S+YDL +  L EKPW    AD+TDYFNYGFTEETWK+YCERQK++R+E+
Sbjct:   29 STTPPSSSYNSYAPVNLNIGK-RGPAFGPG----GQVTNAASAAKGKASGLDIDAVGLYNGG-SIYDLNLDALEEKPWRKPGADITDYFNYGFTEETWKIYCERQKKLRIEL 134          
BLAST of Gchil9022.t1 vs. uniprot
Match: UPI0006448934 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006448934)

HSP 1 Score: 89.7 bits (221), Expect = 2.600e-15
Identity = 47/110 (42.73%), Postives = 63/110 (57.27%), Query Frame = 0
Query:  225 NKWQRPGYVPPERVIGNATQGAARAGGLLSMLPAPTMQ--VGNAQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDGNKNQ 332
            NK  +    P    + N T      GG  S++     Q      QKS+YD+ +  L +KPW    AD+TDYFNY FTEETW++YCERQ Q+R E + L KIK+ + +KNQ
Sbjct:   86 NKTTKSSSGPKAGFLRNPTSITPGTGGKYSLVKQANTQYQANRPQKSIYDVNLDSLEDKPWNKPGADITDYFNYNFTEETWRMYCERQNQLRAEQANLGKIKSYE-SKNQ 194          
BLAST of Gchil9022.t1 vs. uniprot
Match: A0A8J4PYA9_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PYA9_9MYCE)

HSP 1 Score: 88.6 bits (218), Expect = 6.620e-15
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 0
Query:  266 AQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDGNKN 331
            AQK++YD++I    +KPWL   AD+TDYFNY FTEETWK YCERQ QMR E+S   KIK  +   N
Sbjct:  129 AQKTIYDVDIESFEDKPWLKPGADITDYFNYNFTEETWKAYCERQNQMRAELSNQGKIKGYESKNN 194          
The following BLAST results are available for this feature:
BLAST of Gchil9022.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IXP8_9FLOR5.140e-15364.24Pre-mRNA 3'-end-processing factor FIP1 n=1 Tax=Gra... [more]
R7QHW7_CHOCR9.180e-3672.92Fip1 domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A6T6N6Z9_9RHOD2.050e-3156.15Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5J4Z2U3_PORPP1.430e-2953.79Pre-mRNA 3'-end-processing factor FIP1 n=1 Tax=Por... [more]
A0A1X6PAB0_PORUM1.160e-2675.95Fip1 domain-containing protein n=1 Tax=Porphyra um... [more]
M2W1X7_GALSU6.130e-1936.05Fip1 domain-containing protein n=1 Tax=Galdieria s... [more]
A0A3S3P8U4_9ACAR2.330e-1646.55Pre-mRNA 3'-end-processing factor FIP1 n=1 Tax=Din... [more]
A0A3S3P8L1_9ACAR3.150e-1644.64Pre-mRNA 3'-end-processing factor FIP1 n=1 Tax=Din... [more]
UPI00064489342.600e-1542.73hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A8J4PYA9_9MYCE6.620e-1559.09Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007854Pre-mRNA polyadenylation factor Fip1 domainPFAMPF05182Fip1coord: 272..314
e-value: 6.9E-19
score: 67.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 570..685
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..196
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 495..685
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..196
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 328..348
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 326..374
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 549..569
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 512..526
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..44
NoneNo IPR availablePANTHERPTHR36884:SF4FIP1[III]-LIKE PROTEINcoord: 268..355
IPR044976FIPS3/FIPS5-likePANTHERPTHR36884FIP1[III]-LIKE PROTEINcoord: 268..355

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1040361..1042418 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9022.t1Gchil9022.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004370_pilon 1040361..1042418 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil9022.t1 ID=Gchil9022.t1|Name=Gchil9022.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=686bp
MATAPDLSEEDLELYGESVPESPSNRKMDEIDSADGEKDGPSKPDSQEPP
MVTEAPSTGRGKSAVASEKRGEELNENSEATGAIDERRLTLEVQQDKQGD
GVQITPSNSKIEGSEKENQVEKVVQVQEEEEKKSGEDAPPSKTADDAEGA
EDAEDAEGAEDAEDAEGAEDAEDAEDAEDEEDEEDEDESDDDDFDVIVNC
DEGDVASRPMSTSFGSIGKVRLGTNKWQRPGYVPPERVIGNATQGAARAG
GLLSMLPAPTMQVGNAQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTE
ETWKLYCERQKQMRLEVSMLAKIKTVDGNKNQGANPPRNVSQNAPKPPIN
RPHENRNRHGGPDQAGGGANNKLRHQPAMLRGVMGLPPPGPMQPMMGMPN
MPNMPNMPNMPNMPNMPNMPNMPNMPNMRNAPEHMPGMPQNMPQFPPFNP
KDANRNSRGFPGGLPGYPFMPGNQPNENMFLYPGMPNFGPVGMPNAISQP
GMGRVDPNNRGFPGQMNLTPGQPPQDKVNKISPARHMGQEDGQNMDGRRR
SGQGHQNSRFGNAQGGQSKAHQGRHEHDRRQRWGENRGHMDRRQDFERHG
QEGGHGQGRRGYDDRGYGDRNQDRRRYNDGREDGYDNSRRRGGNYDGAGR
SDRRDFDRDRERGRDYRKRQSSSRDFDDDRKRARR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007854Fip1_dom
IPR044976FIPS3/FIPS5-like