Gchil9009.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil9009.t1
Unique NameGchil9009.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length293
Homology
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BLAST of Gchil9009.t1 vs. uniprot
Match: A0A2V3ITG0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITG0_9FLOR)

HSP 1 Score: 197 bits (500), Expect = 2.360e-58
Identity = 123/269 (45.72%), Postives = 157/269 (58.36%), Query Frame = 0 
Query:   31 LHNVFCQRNVKQARHAAGARKPDTAYAHSIYSQYAQSQIAYTPTAPDRAGKQSPIHQMEHHRDRDGVYRNVAYVSKLASERAAVQTPSEAPS---SPALSLAPFPLSPSMQAAAAYDM----------PRQVLPASRSRQVASRY-SEAYRDCQYCGKECTREHHMTHELQCAFTPIQCARCAQYLRRVDEQYHLQSGCLHGVMNGSTRS----IVTTSRAIARQGREIYTSDFRKMAGAAAFALAAYVGSRLVSRGGRGGDGPHIRYE 281
            +H+V C+R   ++R  A   K DT+YAHS+Y QYAQ++        ++ G   P    E H      Y       K  SE+   QTP ++P    SP  S  PFP++P+M A   YD+          P QVLP  R  + A  + S++Y DCQYCG+E  RE HMTHEL CAFT I C RC   +RR+DE  HLQSGC  GVM  ST+S    I T  R +AR  +++YT+D RKMAGAAAFALAAY GSRL+SR  R GDG ++R E
Sbjct:    1 MHDVVCRRKASKSRRGARGPKSDTSYAHSVYEQYAQARKEQAEATQEQVGYIQPY--FEPHATGYTPYGYSQSQPKAESEQHMYQTPPQSPKRSFSPVNSPPPFPVTPAMSAVG-YDLNLPLLPAHVQPAQVLPVHRGTREAEEHGSDSYSDCQYCGRELAREAHMTHELACAFTSIVCKRCHHPVRRLDENVHLQSGCSQGVMGTSTQSKGTMIPTVPRDVARFRQDVYTTDIRKMAGAAAFALAAYAGSRLLSRR-RSGDGTNLRPE 265
The following BLAST results are available for this feature:
BLAST of Gchil9009.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3ITG0_9FLOR2.360e-5845.72Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 163..218
e-value: 2.7E-6
score: 29.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..94
NoneNo IPR availableSUPERFAMILY49599TRAF domain-likecoord: 168..224

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:949626..950504 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9009.t1Gchil9009.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004370_pilon 949626..950504 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil9009.t1 ID=Gchil9009.t1|Name=Gchil9009.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=293bp
MPKRRHTPRGGDPTFVCATCDAPVLERNRVLHNVFCQRNVKQARHAAGAR
KPDTAYAHSIYSQYAQSQIAYTPTAPDRAGKQSPIHQMEHHRDRDGVYRN
VAYVSKLASERAAVQTPSEAPSSPALSLAPFPLSPSMQAAAAYDMPRQVL
PASRSRQVASRYSEAYRDCQYCGKECTREHHMTHELQCAFTPIQCARCAQ
YLRRVDEQYHLQSGCLHGVMNGSTRSIVTTSRAIARQGREIYTSDFRKMA
GAAAFALAAYVGSRLVSRGGRGGDGPHIRYETVDANGAHNEP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD