Gchil8952.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8952.t1
Unique NameGchil8952.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length702
Homology
BLAST of Gchil8952.t1 vs. uniprot
Match: A0A2V3IPQ4_9FLOR (Zinc finger protein OZF n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPQ4_9FLOR)

HSP 1 Score: 507 bits (1305), Expect = 7.370e-162
Identity = 347/715 (48.53%), Postives = 428/715 (59.86%), Query Frame = 0
Query:   13 MFDRLSSMYKKYMLDAHVAHWLHLPHSTPDFRALQPHSSLLLSIQPLLHHRNSNSNININNKSNHFFPNTNDLIFVDHSHNNFVLGHIWGDVNSNSHPYAPLSKLAANPAWLNATVRSRKFAADTSVPDTIETVEYVWFHDNRAMVILSLTTFEPSQPVRHYSEIVYYAPATSDHHILLQQRPELVLRLSRHDMCVDCAASICRCARPRDDHAPSPNSPY-----------------AKRSQPLHLHPGHPHYAALPSVAARWRRTVHTVFAGHRQGTLTLHAAGCNTPPHLNFTYQLRTHTGQALTSRIHLHLLSRMPRTPXXXXXXXXXXX-------------LALPTLHAPPPSSVPFSALR-SCHRSSDRMPDTSLARILNSGHESQ----QPASHCASSPA-----FDASPDSTRAALTPALPSPLPPALXLPTSEPLTKRPRTEAARPADNFLFSLDSAWSPTFPDDSARVPXXXXXXXXXXXXXXSADRPFSALHRVPAPARSPSPLAFLSAFGKTPSPPA-FPLANSSSNFFQRFPPTPHIDMPSPFDVVPNQHP-DAASIS-RGPFTSTIPPVPDPLRMDMHHPHLSNMKHESSPLTAPSMHIMEPITVPEPLALPIR-------VTTTXXXXXXSAALESDQASRKGVKCEICGLIFAKRGNKQRHIQTVHNGLKKFXXXXXXXXXXXXXXXXXXKFRIHESRA 677
            MFDRLS+MYK++MLD HVAHWL    S  DFRAL P+++ +LS++P   H +S +N + ++K    FP ++DLIFVDH+H NFVLGHIWGD+ S++HPY+ LS L A  AW +A+VR RKFA DTS P TIE VEYVWF D+RA+VILSLTTFEP+QPVRHYSE+VYY P      ++L QRP+LVLRL+R ++C +C A +C C      H   P++P                  A  +   H+    P    L  V A W+R + T + G R+GTLT+  A  +  P  + TY LR   G+ +  RI L LLSRMPRTP          X               L  L A  P S P +    +C   ++RMPDTSLARILNS H+SQ      A +   +P      FDASPDSTRAALTP          X      L KRPRTE  R AD+ LFSLDS WSPTF DD                   +A+RPFSAL R   P RSPSPL  LSAFGKTPSPPA FPL N S N FQRFPPTPHID+PSPFD++ N +  +A S++ R    S +P   D     + +  L + K E SPLT PS +I++   +PE L +  R       V TT          E+ QA+R GV+CEICG +F KRGNKQRHIQTVH  +KKF XXXXXXXXXXXXXXXXX+ R+HESRA
Sbjct:  409 MFDRLSAMYKRHMLDPHVAHWLLTRRSPADFRALNPNTAFVLSVRP---HHHSLTNPHSHHKPPTPFPKSDDLIFVDHTHLNFVLGHIWGDLTSDAHPYSSLSDLTATTAWPHASVRCRKFATDTSRPYTIEYVEYVWFDDDRAIVILSLTTFEPAQPVRHYSEVVYYRPIPIHSQLILSQRPQLVLRLTREEICANCQARLCHCPNVAAPHQ-QPSTPTTXXXVTRPPIDDTATDDADHTDDEHISSSQP----LDHVTASWKRALRTAYNGRRRGTLTILNATSSGAPESHSTYHLRARHGRRIAPRIQLQLLSRMPRTPPPLAVPTPAAXXXXXXXXXXXXPSFQLTALAATAPISAPQATCTPNCDCPAERMPDTSLARILNSRHDSQTRRNDKAHNATDNPTAATACFDASPDSTRAALTPXXXXXXXXXXXXXXXXXLAKRPRTEPLR-ADSLLFSLDS-WSPTFADDGCGATRGPSLQGTLP----AAERPFSALTRAMTPGRSPSPLPLLSAFGKTPSPPAPFPLTNCS-NVFQRFPPTPHIDLPSPFDILGNHNGGEAVSLTARNTLPSALPTTADAFGTVVRNGALGSTKLECSPLTVPSFNIVDASPMPEALNVQFRASSAGSTVETTRATNASVGQHENAQAARSGVQCEICGALFGKRGNKQRHIQTVHKRVKKFVXXXXXXXXXXXXXXXXXRVRMHESRA 1108          
BLAST of Gchil8952.t1 vs. uniprot
Match: R7QMQ3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMQ3_CHOCR)

HSP 1 Score: 91.3 bits (225), Expect = 2.200e-15
Identity = 100/266 (37.59%), Postives = 126/266 (47.37%), Query Frame = 0
Query:  414 EPLTKRPRTEAA-RPADNFLFSLDSAWSPTFPDDSARVPXXXXXXXXXXXXXXSADRPFSALHRVPAPARSPSPLAFLSAFGKTPSPPAFPLANSSSNFFQRFPPTPHIDMPSPFDV-VPNQHPDAASISRGPFTSTIPPVPDPLRMDMHHPHLSNMKHESSPLTAPSMHIMEPITVPEPLALPIRVTTTXXXXXXSAALESDQASRKGVKCEICGLIFAKRGNKQRHIQTVHNGLKKFXXXXXXXXXXXXXXXXXXKFRIHESRA 677
            EP  KRPR++   RPA   L S+D  WS    DD   +P              +ADRP SAL R     RSPSP   +S     PSPP  PL+ ++  F Q      H    + FD  V  +  D  +  R      +       R D H       K E   L   S +  +                       + A  ++Q+   GV+CE+CGL FAKR NK RH+QTVH+GLK+F XXXXXXXXXXXXXXXXX++RIH SRA
Sbjct:  341 EPPMKRPRSDTTQRPAPLNLSSMDQPWSSF--DDHRTIPMPSWNMAV------AADRPQSALARAFGMTRSPSPAGLMSGTPYVPSPPTAPLSTANFGFPQAITHQDHFMQGASFDSSVLGREADIVNQQRMQANDGVEE-----RRDQH------QKREQHHLVGDSPNTND----------------------GTGANTNEQSVANGVQCEVCGLSFAKRSNKSRHVQTVHDGLKQFEXXXXXXXXXXXXXXXXXRYRIHVSRA 565          
The following BLAST results are available for this feature:
BLAST of Gchil8952.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IPQ4_9FLOR7.370e-16248.53Zinc finger protein OZF n=1 Tax=Gracilariopsis cho... [more]
R7QMQ3_CHOCR2.200e-1537.59Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 650..673
e-value: 0.12
score: 21.5
coord: 621..644
e-value: 0.021
score: 24.0
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 652..673
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 623..644
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 621..649
score: 10.470842
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 650..678
score: 10.553974
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 597..676
e-value: 7.1E-13
score: 50.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 226..246
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 399..413
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 365..388
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 308..427
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 313..339
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 443..478
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 621..669

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:377559..380504 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8952.t1Gchil8952.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004370_pilon 377559..380504 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8952.t1 ID=Gchil8952.t1|Name=Gchil8952.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=702bp
MPPSSVSPPVSAMFDRLSSMYKKYMLDAHVAHWLHLPHSTPDFRALQPHS
SLLLSIQPLLHHRNSNSNININNKSNHFFPNTNDLIFVDHSHNNFVLGHI
WGDVNSNSHPYAPLSKLAANPAWLNATVRSRKFAADTSVPDTIETVEYVW
FHDNRAMVILSLTTFEPSQPVRHYSEIVYYAPATSDHHILLQQRPELVLR
LSRHDMCVDCAASICRCARPRDDHAPSPNSPYAKRSQPLHLHPGHPHYAA
LPSVAARWRRTVHTVFAGHRQGTLTLHAAGCNTPPHLNFTYQLRTHTGQA
LTSRIHLHLLSRMPRTPPPPPPPPPPPPLALPTLHAPPPSSVPFSALRSC
HRSSDRMPDTSLARILNSGHESQQPASHCASSPAFDASPDSTRAALTPAL
PSPLPPALPLPTSEPLTKRPRTEAARPADNFLFSLDSAWSPTFPDDSARV
PPPQSMAAAAAAAPPSADRPFSALHRVPAPARSPSPLAFLSAFGKTPSPP
AFPLANSSSNFFQRFPPTPHIDMPSPFDVVPNQHPDAASISRGPFTSTIP
PVPDPLRMDMHHPHLSNMKHESSPLTAPSMHIMEPITVPEPLALPIRVTT
TTTATTASAALESDQASRKGVKCEICGLIFAKRGNKQRHIQTVHNGLKKF
RCDICGNPFGLKADLNRHKFRIHESRAHLTQSDETNGSVIQPAYQAMTNI
S*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf