Gchil8655.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8655.t1
Unique NameGchil8655.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length234
Homology
BLAST of Gchil8655.t1 vs. uniprot
Match: A0A2V3IDL5_9FLOR (Cleavage and polyadenylation specificity factor subunit 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDL5_9FLOR)

HSP 1 Score: 431 bits (1107), Expect = 5.250e-152
Identity = 216/236 (91.53%), Postives = 223/236 (94.49%), Query Frame = 0
Query:    1 MPAPL---AIGKSLTPGESEVAPHGKQIFKFEVENGLHEVRRLDETAWGTSTDLCPDFYSENGCTRGERCQWRHARNDRLIVCKHYLRGLCKKQDMCDYLHSVDYLRMPECFFFSKYGECSNNECPYRHVDPEKKRNXXPYYARGFCRHGPKCRHRHVKKVAXXXXXXXXXXXXXXXVFGHARFEIPRTADDEDMFSNGIDRFGFGRSRGPAPRLITHENGMLATAAGTMPHGGRR 233
            MPAP+    I  +L PGESE+A +GKQ+F+FEVENGL EVRRLDETAWGTSTDLCPDFYSENGCTR ERCQWRHARNDRLIVCKHYLRGLCKKQDMCDYLHSVDYLRMPECFFFSKYGECSNNECPYRHVDPEKK+N XPYYARGFCRHGPKCRHRHVKKV XXXXXXXXXXXXXXXVFGHARFEIPRTADDEDMFSNGIDRFGFGRSRGPAPRLITHENGMLATAAGTMPHG RR
Sbjct:    1 MPAPVLIPGIPSALVPGESELALNGKQVFQFEVENGLDEVRRLDETAWGTSTDLCPDFYSENGCTRAERCQWRHARNDRLIVCKHYLRGLCKKQDMCDYLHSVDYLRMPECFFFSKYGECSNNECPYRHVDPEKKKNEXPYYARGFCRHGPKCRHRHVKKVXXXXXXXXXXXXXXXXVFGHARFEIPRTADDEDMFSNGIDRFGFGRSRGPAPRLITHENGMLATAAGTMPHGNRR 236          
BLAST of Gchil8655.t1 vs. uniprot
Match: R7QPX5_CHOCR (Putative PCSF-30 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPX5_CHOCR)

HSP 1 Score: 370 bits (951), Expect = 3.690e-128
Identity = 185/215 (86.05%), Postives = 195/215 (90.70%), Query Frame = 0
Query:   10 SLTPGESEVAPHGKQIFKFEVENGLHEVRRLDETAWGTSTDLCPDFYSENGCTRGERCQWRHARNDRLIVCKHYLRGLCKKQDMCDYLHSVDYLRMPECFFFSKYGECSNNECPYRHVDPEKKRNXXPYYARGFCRHGPKCRHRHVKKVAXXXXXXXXXXXXXXXVFGHARFEIPRTADDEDMFSNGIDRFGFGRSRGPAPRLITHENGMLATAA 224
            S+  G++ +AP G Q+F+FEVENGL EVRRLDETA GTSTDLCP F+S NGCTRG+RCQWRHARND+LIVCKHYLRGLCKKQD+CDYLHSVDY RMPECFFFSKYGECSN ECPYRHVDPEKKRN  PYY RGFCRHGPKCRHRHVKKVAXXXXXXXXXXXXXXX FGHARFEI R  DDED FSNGIDRFGFGRSRGPAPRLIT ENGMLATAA
Sbjct:    3 SIVSGDTAIAPLGNQVFRFEVENGLDEVRRLDETASGTSTDLCPYFFSPNGCTRGDRCQWRHARNDKLIVCKHYLRGLCKKQDLCDYLHSVDYGRMPECFFFSKYGECSNAECPYRHVDPEKKRNECPYYGRGFCRHGPKCRHRHVKKVAXXXXXXXXXXXXXXXXFGHARFEIARNVDDEDTFSNGIDRFGFGRSRGPAPRLITLENGMLATAA 217          
BLAST of Gchil8655.t1 vs. uniprot
Match: A0A1X6P8C9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P8C9_PORUM)

HSP 1 Score: 280 bits (716), Expect = 8.660e-93
Identity = 142/210 (67.62%), Postives = 162/210 (77.14%), Query Frame = 0
Query:   15 ESEVAPHGKQIFKFEVENGLHEVRRLDETAWGTSTDLCPDFYSENGCTRGERCQWRHARNDRLIVCKHYLRGLCKKQDMCDYLHSVDYLRMPECFFFSKYGECSNNECPYRHVDPEKKRNXXPYYARGFCRHGPKCRHRHVKKVAXXXXXXXXXXXXXXXVFGHARFEIPRTADDEDMFSNGIDRFGFGRSRGPAPRLITHENGMLATAA 224
            E + AP   Q+F FEVEN L   RR D+ A G STDLC  F+S  GC +G RCQ+RHARNDRLIVCKH+LRGLCKK + C+YLH  D  +MPEC+FFSK+GECSN EC YRH+DPEKKRN  PY+ARGFC+HGPKCRHRHVKKVA   XXXXXXXXXXXXVFGHARFE PR   D+D    GIDRFGFGR +GPAP++I  +N   A AA
Sbjct:    5 EFDAAPLHGQVFDFEVENQLDIQRRDDDMAEGRSTDLCRFFFSPQGCAKGSRCQYRHARNDRLIVCKHWLRGLCKKDEFCEYLHEFDLSKMPECYFFSKFGECSNTECMYRHIDPEKKRNECPYFARGFCKHGPKCRHRHVKKVACANXXXXXXXXXXXXVFGHARFETPRADGDDDP--GGIDRFGFGRPKGPAPKIIFRDNVATAAAA 212          
BLAST of Gchil8655.t1 vs. uniprot
Match: A0A5J4YR05_PORPP (Cleavage and polyadenylation specificity factor subunit 4 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YR05_PORPP)

HSP 1 Score: 242 bits (617), Expect = 6.060e-77
Identity = 141/226 (62.39%), Postives = 156/226 (69.03%), Query Frame = 0
Query:   17 EVAPHGKQIFKFEVENGLHEVRRLDETAWGTSTDLCPDFYSENG--CTRGERCQWRHARNDRLIVCKHYLRGLCKKQDMCDYLHSVDYLRMPECFFFSKYGECSNNECPYRHVDPEKKRNXXPYYARGFCRHGPKCRHRHVKKVAXXXXXXXXXXXXXXXVFGHARFEIPRTADDEDMFSNGIDRFGFGRSRG-------PAPRLITHENGMLATAAGTMPHGGRR 233
            E AP   QIFKFE + G       D+TA G STDLC  F++  G  C +G  CQ+RHARNDRLIVCKH+LRGLCKK + C+YLH  D  RMPECFFFSK+GECSN EC YRHVD +KKRN  PYYARGFC+HGPKCRHRHVK+VAXXXXXXXXXXXXXXX  GHARFEIPRT + +D    G DRFGF R  G       P P       GM A   G M  GG R
Sbjct:   28 EPAPLCGQIFKFESDLGYDRQYVEDQTAPGHSTDLCSFFFAPGGSQCDKGAFCQYRHARNDRLIVCKHWLRGLCKKAEFCEYLHEFDMSRMPECFFFSKFGECSNAECQYRHVDLDKKRNECPYYARGFCKHGPKCRHRHVKRVAXXXXXXXXXXXXXXXXXGHARFEIPRTDEVDD---GGADRFGFSRGAGSGAQPSGPPPGGYDGHAGMNAGGYGGMDGGGNR 250          
BLAST of Gchil8655.t1 vs. uniprot
Match: A0A7S1ETJ6_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ETJ6_9RHOD)

HSP 1 Score: 231 bits (588), Expect = 5.550e-73
Identity = 125/192 (65.10%), Postives = 146/192 (76.04%), Query Frame = 0
Query:   17 EVAPHGKQIFKFEVENGLHEVRRLDETAWGTSTDLCPDFYSENG--CTRGERCQWRHARNDRLIVCKHYLRGLCKKQDMCDYLHSVDYLRMPECFFFSKYGECSNNECPYRHVDPEKKRNXXPYYARGFCRHGPKCRHRHVKKVAXXXXXXXXXXXXXXXVFGHARFEIPRTADDEDMFSNGIDRFGFGRSR 206
            +VA    Q+FKFE  +GL      D++A G STDLC  F++  G  C +G  CQ+RHARNDRLIVCKH+LRGLCKK + C+YLH  D  RMPEC+FFSK+GECSN EC YRHVD +KKRN  PYYARGFC+HGPKCRHRHVK+VAXXXXXXXXXXXXXXX  GHARFEI R  D++      +DRFGFGR +
Sbjct:   30 DVASLNGQVFKFEKAHGLDVQYVQDKSALGNSTDLCTFFFNTGGNACDKGALCQYRHARNDRLIVCKHWLRGLCKKGEYCEYLHEYDMSRMPECYFFSKFGECSNAECMYRHVDLDKKRNECPYYARGFCKHGPKCRHRHVKRVAXXXXXXXXXXXXXXXXXGHARFEITRENDED----TAVDRFGFGRPK 217          
BLAST of Gchil8655.t1 vs. uniprot
Match: M2Y5S4_GALSU (CCCH-type zinc finger-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y5S4_GALSU)

HSP 1 Score: 191 bits (486), Expect = 8.880e-58
Identity = 116/192 (60.42%), Postives = 131/192 (68.23%), Query Frame = 0
Query:   19 APHGKQIFKFEVENGLHEVRRLDETAWGTSTDLCPDFYSENGCTRGERCQWRHARNDRLIVCKHYLRGLCKKQDMCDYLHSVDYLRMPECFFFSKYGECSNNECPYRHVDPEKKRNXXPYYARGFCRHGPKCRHRHVKKVAXXXXXXXXXXXXXXXVFGHARFEIPRTADDEDMFSNGIDRFGFGRSRGPAP 210
            AP G QIF FE  N   +    D  + GTSTDLCP F+S++GC +G  CQ+RHARNDRLIVCKH+LRGL         LH  D  +MPEC+FFSK+GECSN EC YRHVDPE    XX   ARGFCRHG K R  H+KKVAXXXXXXXXXXXXXXX    A+FEIPR  D+ED      D +GFGR RG  P
Sbjct:   10 APIGNQIFAFERINNFDKQIEEDFNSPGTSTDLCPLFFSKSGCKKGSWCQYRHARNDRLIVCKHWLRGLXXXXXXXXXLHEYDMSKMPECYFFSKFGECSNTECLYRHVDPEXXXXXXXXXARGFCRHGAKXRXXHIKKVAXXXXXXXXXXXXXXXXXXXAKFEIPRL-DEEDA-----DPYGFGRPRGKGP 195          
BLAST of Gchil8655.t1 vs. uniprot
Match: UPI001E1DAA5D (cleavage and polyadenylation specificity factor subunit 4-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DAA5D)

HSP 1 Score: 152 bits (385), Expect = 1.190e-41
Identity = 72/155 (46.45%), Postives = 100/155 (64.52%), Query Frame = 0
Query:   51 LCPDFYSENGCTRGERCQWRHARNDRLIVCKHYLRGLCKKQDMCDYLHSVDYLRMPECFFFSKYGECSNNECPYRHVDPEKKRNXXPYYARGFCRHGPKCRHRHVKKVAXXXXXXXXXXXXXXXVFGHARFEIPRTADDEDMFSNGIDRFGFGRS 205
            +C  F +  GC++   C +RH + ++ +VCKH+LRGLCKK D C++LH  D  +MPECFFFSKYG+C+N ECP+ H+DPE+K     +Y RGFCRHGP C++RHV+++       XXXXXXXXX     R+++P   D    F   +     G S
Sbjct:   40 ICTFFLTPVGCSKATACPFRHIKGEKTVVCKHWLRGLCKKGDDCEFLHEFDMTKMPECFFFSKYGQCNNKECPFLHIDPEQKVKDCAWYDRGFCRHGPNCKNRHVRRLICQNYLCXXXXXXXXXXXXXPRYDLPVQDDKTKKFHQTVTCHNCGES 194          
BLAST of Gchil8655.t1 vs. uniprot
Match: UPI000644B54C (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644B54C)

HSP 1 Score: 152 bits (385), Expect = 2.180e-41
Identity = 72/132 (54.55%), Postives = 100/132 (75.76%), Query Frame = 0
Query:   58 ENGCTRGERCQWRHARNDRLIVCKHYLRGLCKKQDMCDYLHSVDYLRMPECFFFSKYGECSNNECPYRHVDPEKKRNXXPYYARGFCRHGPKCRHRHVKKVAXXXXXXXXXXXXXXXVFGHARFEIPRTADD 189
            +  CT+G  C ++H++ +  +VCKH+LRGLCKK ++C++LH  D  +MPEC+FFSK+GECSN EC Y H++PE+K    P+YARGFC+HGPKCRH+H+KK+    XXXXXXXXXXXX     +FE+P+   +
Sbjct:    2 KGNCTKGHDCPYKHSKTEHAVVCKHWLRGLCKKGELCEFLHEYDLAKMPECYFFSKFGECSNQECMYLHLNPEEKVVECPWYARGFCKHGPKCRHKHMKKLLCENXXXXXXXXXXXXXXXXPKFELPKEESE 133          
BLAST of Gchil8655.t1 vs. uniprot
Match: A0A2H2I163_CAEJA (Cleavage and polyadenylation specificity factor subunit 4 n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2I163_CAEJA)

HSP 1 Score: 152 bits (383), Expect = 3.240e-41
Identity = 90/173 (52.02%), Postives = 105/173 (60.69%), Query Frame = 0
Query:   61 CTRGERCQWRHARNDRLIVCKHYLRGLCKKQDMCDYLHSVDYLRMPECFFFSKYGECSNNECPYRHVDPEKKRNXXPYYARGFCRHGPKCRHRHVKKVAXXXXXXXXXXXXXXXVFGHARFEIPRTADDEDMFSNGIDRFGFGRSRGPAPRLIT----HENGMLATAAGTMPH 229
            C  G  C  RH   ++ +VCKH+LRGLCKK D C++LH  D  +MPECFFFSKY  CSN ECP+RH+DPE K    P+Y RGFCRHGP C+HRH ++  XXXXXXXXXXXXXXX   H  F IP        F N        + R P  + IT    HE G  AT   T PH
Sbjct:   73 CPFGHNCPLRHIIGEKAVVCKHWLRGLCKKGDQCEFLHEYDLTKMPECFFFSKYSACSNRECPFRHIDPETKLKDCPWYDRGFCRHGPYCKHRHRRRAVXXXXXXXXXXXXXXXXXXHPSFNIP-------SFENTAPVHTHYQQRAPYSQAITCHNCHERGHKAT---TCPH 235          
BLAST of Gchil8655.t1 vs. uniprot
Match: A0A5K4F9M8_SCHMA (Uncharacterized protein n=1 Tax=Schistosoma mansoni TaxID=6183 RepID=A0A5K4F9M8_SCHMA)

HSP 1 Score: 144 bits (364), Expect = 3.850e-40
Identity = 59/105 (56.19%), Postives = 75/105 (71.43%), Query Frame = 0
Query:   55 FYSENGCTRGERCQWRHARNDRLIVCKHYLRGLCKKQDMCDYLHSVDYLRMPECFFFSKYGECSNNECPYRHVDPEKKRNXXPYYARGFCRHGPKCRHRHVKKVA 159
            F+  N C     C  RH + DR +VCKH+LRGLCKK D C++LH  D  +MPEC+FFSK+GEC N ECP+ H+DP  K    P+Y RGFCR+GP CR+RHV++VA
Sbjct:   43 FFITNQCPLNNLCPLRHIKADRTVVCKHWLRGLCKKGDDCEFLHEYDMTKMPECYFFSKFGECMNKECPFLHIDPASKVQDCPWYDRGFCRNGPLCRNRHVRRVA 147          
The following BLAST results are available for this feature:
BLAST of Gchil8655.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IDL5_9FLOR5.250e-15291.53Cleavage and polyadenylation specificity factor su... [more]
R7QPX5_CHOCR3.690e-12886.05Putative PCSF-30 n=1 Tax=Chondrus crispus TaxID=27... [more]
A0A1X6P8C9_PORUM8.660e-9367.62Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A5J4YR05_PORPP6.060e-7762.39Cleavage and polyadenylation specificity factor su... [more]
A0A7S1ETJ6_9RHOD5.550e-7365.10Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
M2Y5S4_GALSU8.880e-5860.42CCCH-type zinc finger-containing protein n=1 Tax=G... [more]
UPI001E1DAA5D1.190e-4146.45cleavage and polyadenylation specificity factor su... [more]
UPI000644B54C2.180e-4154.55hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A2H2I163_CAEJA3.240e-4152.02Cleavage and polyadenylation specificity factor su... [more]
A0A5K4F9M8_SCHMA3.850e-4056.19Uncharacterized protein n=1 Tax=Schistosoma manson... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 46..73
e-value: 1.2
score: 15.6
coord: 102..128
e-value: 0.08
score: 22.1
coord: 74..100
e-value: 0.002
score: 27.4
coord: 131..156
e-value: 0.031
score: 23.5
coord: 157..180
e-value: 1.5
score: 14.9
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 46..71
score: 9.215966
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 74..101
score: 13.074886
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 130..157
score: 14.783703
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 159..181
score: 9.065741
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 102..129
score: 12.229868
NoneNo IPR availableGENE3D4.10.1000.10coord: 72..131
e-value: 2.2E-17
score: 64.8
NoneNo IPR availableGENE3D4.10.1000.10coord: 132..189
e-value: 7.4E-8
score: 34.1
NoneNo IPR availablePFAMPF14608zf-CCCH_2coord: 108..126
e-value: 0.29
score: 11.8
coord: 159..179
e-value: 0.011
score: 16.3
coord: 52..72
e-value: 0.41
score: 11.3
IPR045348CPSF complex subunit CPSF4-likePANTHERPTHR23102CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-RELATEDcoord: 25..189
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 47..75
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 76..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:922729..923430 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8655.t1Gchil8655.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000088_pilon 922729..923430 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8655.t1 ID=Gchil8655.t1|Name=Gchil8655.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=234bp
MPAPLAIGKSLTPGESEVAPHGKQIFKFEVENGLHEVRRLDETAWGTSTD
LCPDFYSENGCTRGERCQWRHARNDRLIVCKHYLRGLCKKQDMCDYLHSV
DYLRMPECFFFSKYGECSNNECPYRHVDPEKKRNECPYYARGFCRHGPKC
RHRHVKKVACTNYLAGFCKDGPDCVFGHARFEIPRTADDEDMFSNGIDRF
GFGRSRGPAPRLITHENGMLATAAGTMPHGGRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR045348CPSF4/Yth1
IPR036855Znf_CCCH_sf