Gchil8639.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8639.t1
Unique NameGchil8639.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length121
Homology
BLAST of Gchil8639.t1 vs. uniprot
Match: A0A2V3IMZ3_9FLOR (INO80 complex subunit C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMZ3_9FLOR)

HSP 1 Score: 205 bits (521), Expect = 1.370e-66
Identity = 102/107 (95.33%), Postives = 105/107 (98.13%), Query Frame = 0
Query:   14 MKTKRWRGIYEVMTAKSKSWKSSRSLITNEHYDMMPPSIATYVNIDAPPSMLPAKKYCDITGLPAKYMDPVTKIRFVSKEAFRKARDLPDHKVEEFLSLRQAQIRIK 120
            MKTKR RGIYEVMTAKSKSWK+SRSL+TNEHYDMM PSIATYVNIDAPPSMLPAKKYCDITGLPAKYMDPVTKIRFVSKEAFRKARDLPDHKVEEFL+LRQAQIRIK
Sbjct:    1 MKTKRKRGIYEVMTAKSKSWKNSRSLLTNEHYDMMSPSIATYVNIDAPPSMLPAKKYCDITGLPAKYMDPVTKIRFVSKEAFRKARDLPDHKVEEFLALRQAQIRIK 107          
BLAST of Gchil8639.t1 vs. uniprot
Match: A0A7S2ZR98_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZR98_9RHOD)

HSP 1 Score: 115 bits (288), Expect = 9.930e-31
Identity = 52/99 (52.53%), Postives = 74/99 (74.75%), Query Frame = 0
Query:   22 IYEVMTAKSKSWKSSRSLITNEHYDMMPPSIATYVNIDAPPSMLPAKKYCDITGLPAKYMDPVTKIRFVSKEAFRKARDLPDHKVEEFLSLRQAQIRIK 120
            + EV + K +++KS + L  +E+++++PP + TY NID+PPS LP KKYCD+TG  A Y DP T +RF S EAFR  R LP+H+V++FLSLRQA+ R+K
Sbjct:   38 VNEVTSRKGRNYKSLKQLAGSENFELLPPEVPTYYNIDSPPSTLPPKKYCDLTGFKANYTDPKTGLRFCSPEAFRFLRSLPEHRVQDFLSLRQAEARLK 136          
BLAST of Gchil8639.t1 vs. uniprot
Match: A0A2K1JHA4_PHYPA (YL1_C domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JHA4_PHYPA)

HSP 1 Score: 95.9 bits (237), Expect = 9.870e-23
Identity = 44/93 (47.31%), Postives = 64/93 (68.82%), Query Frame = 0
Query:   28 AKSKSWKSSRSLITNEHYDMMPPSIATYVNIDAPPSMLPAKKYCDITGLPAKYMDPVTKIRFVSKEAFRKARDLPDHKVEEFLSLRQAQIRIK 120
            ++ + WK  + +I  E+Y + P    +YV+I+APPSM PAKKYCDITG  A Y DP TK+R+ + E F+K R LPD +++ +LSLR A + +K
Sbjct:   68 SRGRHWKHLKQIIQAENYHLHPADEPSYVSIEAPPSMYPAKKYCDITGFEAPYTDPRTKLRYSNAEVFKKIRFLPDEQIQGYLSLRNAAVVLK 160          
BLAST of Gchil8639.t1 vs. uniprot
Match: A0A1Y1IAK7_KLENI (YL1_C domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IAK7_KLENI)

HSP 1 Score: 96.3 bits (238), Expect = 1.470e-22
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = 0
Query:   33 WKSSRSLITNEHYDMMPPSIATYVNIDAPPSMLPAKKYCDITGLPAKYMDPVTKIRFVSKEAFRKARDLPDHKVEEFLSLRQAQIRIK 120
            WK  + ++  E+Y ++P    TY NI+APPSM PAKKYCD+TG  AKY DP TK+R+   EAF+  R LPD  V+ +L+LR A + ++
Sbjct:  103 WKRLKQIVQGENYHLLPADEPTYANIEAPPSMYPAKKYCDMTGFEAKYTDPRTKMRYADAEAFKFVRALPDATVQAYLTLRNAAVVLR 190          
BLAST of Gchil8639.t1 vs. uniprot
Match: A0A176WLG8_MARPO (YL1_C domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WLG8_MARPO)

HSP 1 Score: 95.5 bits (236), Expect = 1.670e-22
Identity = 43/93 (46.24%), Postives = 63/93 (67.74%), Query Frame = 0
Query:   28 AKSKSWKSSRSLITNEHYDMMPPSIATYVNIDAPPSMLPAKKYCDITGLPAKYMDPVTKIRFVSKEAFRKARDLPDHKVEEFLSLRQAQIRIK 120
            ++ + WK  + +I  E+Y + P    TYV+I+APPSM PAKKYCDITG  A Y DP TK+R+ + + F++ R LPD  ++ +L+LR A + IK
Sbjct:   75 SRGRHWKHLKQIIQAENYQLYPADEPTYVSIEAPPSMYPAKKYCDITGFEAPYTDPRTKLRYANADIFKRIRSLPDEFIQGYLALRNAAVIIK 167          
BLAST of Gchil8639.t1 vs. uniprot
Match: A0A2G5ELW1_AQUCA (YL1_C domain-containing protein n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5ELW1_AQUCA)

HSP 1 Score: 93.2 bits (230), Expect = 5.220e-22
Identity = 42/88 (47.73%), Postives = 61/88 (69.32%), Query Frame = 0
Query:   33 WKSSRSLITNEHYDMMPPSIATYVNIDAPPSMLPAKKYCDITGLPAKYMDPVTKIRFVSKEAFRKARDLPDHKVEEFLSLRQAQIRIK 120
            WK  + +I  E+Y   PP+   YVNI++PPSM P+KK+CDITG  A Y+DP TKIR+ + + F++ R LP+  V+ +L+LR A I +K
Sbjct:   44 WKLLKQIIQAENYQNYPPNEPNYVNIESPPSMYPSKKFCDITGFEAPYVDPKTKIRYANADVFKRVRALPNDYVQRYLALRNAAIVLK 131          
BLAST of Gchil8639.t1 vs. uniprot
Match: A0A3S3P2R6_9MAGN (INO80 complex subunit C n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3P2R6_9MAGN)

HSP 1 Score: 92.8 bits (229), Expect = 6.110e-22
Identity = 41/93 (44.09%), Postives = 61/93 (65.59%), Query Frame = 0
Query:   28 AKSKSWKSSRSLITNEHYDMMPPSIATYVNIDAPPSMLPAKKYCDITGLPAKYMDPVTKIRFVSKEAFRKARDLPDHKVEEFLSLRQAQIRIK 120
            A+ + WK  + ++  E+Y   P +   Y+NI++PPSM P+KK+CDITG  A YMDP T +R+   E F++ R LP+  V+ +LSLR A I +K
Sbjct:   32 ARGRHWKHLKQILQAENYQTYPANEPNYINIESPPSMYPSKKFCDITGFEAPYMDPRTSLRYAHAEVFKRVRSLPNEYVQRYLSLRNAAIVLK 124          
BLAST of Gchil8639.t1 vs. uniprot
Match: A0A833VKM6_9POAL (INO80 complex subunit C n=2 Tax=Carex littledalei TaxID=544730 RepID=A0A833VKM6_9POAL)

HSP 1 Score: 92.0 bits (227), Expect = 1.230e-21
Identity = 40/93 (43.01%), Postives = 63/93 (67.74%), Query Frame = 0
Query:   28 AKSKSWKSSRSLITNEHYDMMPPSIATYVNIDAPPSMLPAKKYCDITGLPAKYMDPVTKIRFVSKEAFRKARDLPDHKVEEFLSLRQAQIRIK 120
            ++++ WK  + L+  E++  +PP    Y+NI++PPSM P KKYCDITG  A Y+DP TK+R+   E FR+ R+LP   V+ +L+LR A + ++
Sbjct:   32 SRARYWKHLKQLLQAENFISLPPDEPNYLNIESPPSMYPPKKYCDITGFEAPYVDPRTKLRYADPEVFRRVRNLPIEHVQRYLALRNAAVILR 124          
BLAST of Gchil8639.t1 vs. uniprot
Match: A0A1U8AVD9_NELNU (INO80 complex subunit C n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8AVD9_NELNU)

HSP 1 Score: 91.3 bits (225), Expect = 2.460e-21
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 0
Query:   28 AKSKSWKSSRSLITNEHYDMMPPSIATYVNIDAPPSMLPAKKYCDITGLPAKYMDPVTKIRFVSKEAFRKARDLPDHKVEEFLSLRQAQIRIK 120
            A+ + WK  + +I  E+Y   P +   YVNI++PPSM P+KK+CDITG  A Y+DP T +R+ + E F++ R LP+  V+ +L+LR A I +K
Sbjct:   32 ARGRHWKHLKQIIQAENYQTYPANEPNYVNIESPPSMYPSKKFCDITGFEAPYVDPRTNLRYANSEVFKRIRALPNEYVQRYLALRNAAIVLK 124          
BLAST of Gchil8639.t1 vs. uniprot
Match: W1P9S9_AMBTC (YL1_C domain-containing protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1P9S9_AMBTC)

HSP 1 Score: 91.3 bits (225), Expect = 2.460e-21
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 0
Query:   29 KSKSWKSSRSLITNEHYDMMPPSIATYVNIDAPPSMLPAKKYCDITGLPAKYMDPVTKIRFVSKEAFRKARDLPDHKVEEFLSLRQAQIRIK 120
            + + WK  + ++  E+Y   PP    YVNI+APPS+ PAKK+CDITG    Y DP TK+R+V+ + F++ R LP+  V+ +LS+R A + +K
Sbjct:   33 RGRQWKHLKHILQAENYQNYPPDEPNYVNIEAPPSIYPAKKFCDITGFETHYTDPKTKLRYVNTDVFKRIRYLPNDYVQRYLSIRNAAVVLK 124          
The following BLAST results are available for this feature:
BLAST of Gchil8639.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IMZ3_9FLOR1.370e-6695.33INO80 complex subunit C n=1 Tax=Gracilariopsis cho... [more]
A0A7S2ZR98_9RHOD9.930e-3152.53Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A2K1JHA4_PHYPA9.870e-2347.31YL1_C domain-containing protein n=2 Tax=Physcomitr... [more]
A0A1Y1IAK7_KLENI1.470e-2248.86YL1_C domain-containing protein n=1 Tax=Klebsormid... [more]
A0A176WLG8_MARPO1.670e-2246.24YL1_C domain-containing protein n=2 Tax=Marchantia... [more]
A0A2G5ELW1_AQUCA5.220e-2247.73YL1_C domain-containing protein n=2 Tax=Thalictroi... [more]
A0A3S3P2R6_9MAGN6.110e-2244.09INO80 complex subunit C n=1 Tax=Cinnamomum micrant... [more]
A0A833VKM6_9POAL1.230e-2143.01INO80 complex subunit C n=2 Tax=Carex littledalei ... [more]
A0A1U8AVD9_NELNU2.460e-2144.09INO80 complex subunit C n=1 Tax=Nelumbo nucifera T... [more]
W1P9S9_AMBTC2.460e-2143.48YL1_C domain-containing protein n=1 Tax=Amborella ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013272Vps72/YL1, C-terminalSMARTSM00993YL1_C_2coord: 69..98
e-value: 2.1E-11
score: 53.9
IPR013272Vps72/YL1, C-terminalPFAMPF08265YL1_Ccoord: 70..96
e-value: 4.6E-14
score: 51.9
IPR029525INO80 complex, subunit Ies6PANTHERPTHR31200INO80 COMPLEX SUBUNIT Ccoord: 11..119

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:861614..861976 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8639.t1Gchil8639.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000088_pilon 861614..861976 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8639.t1 ID=Gchil8639.t1|Name=Gchil8639.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=121bp
MGATVDVGPNKAIMKTKRWRGIYEVMTAKSKSWKSSRSLITNEHYDMMPP
SIATYVNIDAPPSMLPAKKYCDITGLPAKYMDPVTKIRFVSKEAFRKARD
LPDHKVEEFLSLRQAQIRIK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013272Vps72/YL1_C
IPR029525INO80C/Ies6