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Homology
BLAST of Gchil8497.t1 vs. uniprot
Match: A0A2V3IZ01_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ01_9FLOR) HSP 1 Score: 117 bits (293), Expect = 5.060e-28 Identity = 72/158 (45.57%), Postives = 96/158 (60.76%), Query Frame = 0
Query: 5 NTRPTTIEQDEP-----FPATRLPRRIDMDPNRWEPQAPRSSETHSSTAKLRRTNTSSAKHDISFLLNGPRNSTSTSTQGGQQVPSPVGQPRGEAEAIRKLWKEQQLWARNEIHEVSTPGPSRMRSSHETSWSLTKTHVKRTCAQCGKSFTQSADLKK 157
+T P I+ +P F I M N EP+ P++S + SS +KLRR NTSS KH+ISFLLNGP+ S + Q +P +P+ E+ A+R W+EQQLWA NEI E++ P P+ S + TS + + K+TCAQCGK FTQSADLKK
Sbjct: 39 STTPEAIKPSQPSVLLVFSFRASKEEISMQSNHMEPRCPKNSTSSSSYSKLRRANTSS-KHEISFLLNGPKPSNCDPVRNDQLETTP--RPQQESPAMR--WREQQLWAVNEIRELTNPIPN--SSENSTSSAAARVDAKKTCAQCGKRFTQSADLKK 189
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 198..221
e-value: 0.013
score: 24.7
coord: 169..192
e-value: 0.0026
score: 27.0
coord: 227..250
e-value: 0.043
score: 23.0
coord: 140..163
e-value: 0.05
score: 22.7 |
| IPR013087 | Zinc finger C2H2-type | PFAM | PF00096 | zf-C2H2 | coord: 141..160
e-value: 4.8E-4
score: 20.4
coord: 200..221
e-value: 6.5E-4
score: 20.0 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 171..192 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 200..221 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 229..250 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 142..163 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 140..168
score: 12.008791 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 227..255
score: 11.821743 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 198..226
score: 12.549152 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 169..197
score: 13.920835 |
| None | No IPR available | GENE3D | 3.30.160.60 | Classic Zinc Finger | coord: 141..163
e-value: 1.5E-6
score: 30.1 |
| None | No IPR available | GENE3D | 3.30.160.60 | Classic Zinc Finger | coord: 196..274
e-value: 8.8E-14
score: 53.3 |
| None | No IPR available | GENE3D | 3.30.160.60 | Classic Zinc Finger | coord: 164..195
e-value: 9.3E-8
score: 33.6 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 18..32 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..95 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 36..85 |
| None | No IPR available | PANTHER | PTHR24404 | ZINC FINGER PROTEIN | coord: 40..266 |
| IPR036236 | Zinc finger C2H2 superfamily | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 178..236 |
| IPR036236 | Zinc finger C2H2 superfamily | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 141..189 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Gchil8497.t1 ID=Gchil8497.t1|Name=Gchil8497.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=346bp
MAVCNTRPTTIEQDEPFPATRLPRRIDMDPNRWEPQAPRSSETHSSTAKL
RRTNTSSAKHDISFLLNGPRNSTSTSTQGGQQVPSPVGQPRGEAEAIRKL
WKEQQLWARNEIHEVSTPGPSRMRSSHETSWSLTKTHVKRTCAQCGKSFT
QSADLKKHINCVHLKVRAFKCEQCPSAFGEKGNLNRHVKAVHGREKPWIC
NKCGMPFPFRDSLTRHVRAVHLATRPFACDLCNSTFKKKDHLDRHRYALH
GRRNPSVVHSSPEHVSPQSFNRNIFICDILPPITADAVQLSLVFPDSPRN
TPSLRIGSYPSCLAYCPPGLKVKRHSSRKMYDETFFSHTFHSSKL* back to top
Annotated Terms
The following terms have been associated with this polypeptide:
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