Gchil8496.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8496.t1
Unique NameGchil8496.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length978
Homology
BLAST of Gchil8496.t1 vs. uniprot
Match: A0A2V3IYQ1_9FLOR (Methyl-CpG-binding domain-containing protein 9 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYQ1_9FLOR)

HSP 1 Score: 793 bits (2047), Expect = 4.680e-270
Identity = 504/1002 (50.30%), Postives = 630/1002 (62.87%), Query Frame = 0
Query:    1 MPTVKLRTATP---WKLDEDQSVANAQ---------QTTKSSHNYSHIHDLVAKSSPVTMANTPVQLVTNAKIVSKNPDPSDAHNTDGRVSLNLRIRQHYP-TTAVLSQQQPLKITIKKTITSGQTKEVQQSKPTQGDGADQGRTLISVEQNKPNSK---------VEPQLQLPSAQQHVPQPD---EADSNKQPNEYPSNLTAKLSTKDHQSGSKAIAMKEVSPVTVTQQGDGTPGSNDDEHAPTVPHDKLRLLPILPVPNASVTT---HKSILDSRISPSQVEERVCLSCSNGPPLRGLVPCVACDHALHIHCATPPMEHMPSYPWRCPSCLVRKKSALETKSVAVQTDDRISNYLKDDSRTWLPAKLRNKPRMADVLPPEPKRRTLPDPAISVPFKYSRPIRLENGAVVPIRYVIDGSRAWYSDDDEPEEDYVAAYADADAYDLPANIKSCEFCAVRHPGTFGSGRFCSTKCARTVGGLSRRKYPEFDGPDGLERPRGXXXXXXXXXXXXXXXXXXXXXXXR-LLAGVSHDDVGQLAADFLPESPDDSDLDGNAMRTVGAAPPPKSRYGRTVRSRAGNRLDFDVPSNENSLREPSVERPLMHGSSYVGNNDAKRGVRSQANMWFYAPGKLMDRHMGTSNDSDQVVDQEEPIGIRRTKSDHGSSFAREAYECNEGGVFAHKHGKQRKRNAVHAFEM-GD-QAFPAIPARERMDGLHDDINQSLTIKRMKTE--VDGLWDSSR-YARRRTKRPAYYGSEYDAR--DDPNIVGPGKHRRPLTKPGKGYKFCHNCGAQIANRRFFCTHCGAENPSAKRKAIKFPAEVKEPKPRGRPPKSSKTNSPMSQAPRIQEAPRPAEALRSGATHHIVGVGRPEVSVQSEEDPRPGEESRSGLGERYALQIEDLRVLRENGYGSIEEMMANPPIEVDDLFARYWPTRCYKLYLRITKPR-KALSSRDAAVQGSSNDIVHEVHEQSPESASLSEEDKQSLFSDGIPQADED 965
            MPTV    A P   W +D D  ++N           Q   S+     IHDLV KSSP  +   PVQLVT+AKIV   P  +D  N DGRVSLNLRIR+ YP +TA    QQ         I+S   + +  +     D        +S + N+P  K          +P    PS +   P      +  ++KQ  + P     KL  K   SG KA   KEVSPVTVTQQ +G+  SN    AP+VP +KL+LL IL VPN +      H  I++     ++  +RVC  CS   P   L+ CV CD ALHIHC+ PP+  +PS+PWRCP CL +++S++ TKSVAVQTDDR S YL D SR WLP KLR KP++A +LPP+P+RR+LP PA+SVPFKYSRPIRLENGAVVPIRYV+DG RAW+SDD+E +EDY AAYAD DAYDLP NIKSCE+CAVRHPGTFGSGRFCSTKCARTVGGLSRRKYPE DG +G +RPRGXXXXXXXXXXXXXXXXXXXXXXX  ++A V H+ V  + A+FLP+S DDSDLD N + +  A    ++R+ R VR+R G RLDFD+ SN+NSL + S ERP +HGSS++ +    R   S A  W+++    ++ H    NDSDQ  D E+   IR  +++H     R +YE  +   + HK GKQRKR+A+HAFE  GD +    +P  +R+  L + I+    +KR+KT+  +D LWDS R YARRR K+PA+YGSE D R  ++ N+ G  K R PL+KPGKGYKFCH C AQIANRRF+CT CGAENPSA+RK IK P+E KEPKPRGRPPKSS+ N   + A           AL +  +H                           L + Y L+ ED RVLRENGY +IEEMMANPP EVDDLF  YWPTRCYKLYLRI + + + L+SR    Q S++ IV  V   SPES S+S+EDK S F+      DE+
Sbjct:  138 MPTVNF--AHPHNMWIVDGDPPISNPPXXXXXXXXXQVLPSTVPQPQIHDLVTKSSPANLPEGPVQLVTDAKIVKGPPQSADPDNADGRVSLNLRIREQYPVSTAQHGTQQ---------ISSQPMENISLADDPNSDH-------LSKDVNRPKLKQPSLTVVNNTDPDHGRPSIKAGAPISAVVCKESTSKQAQKPPVKAILKLPHKGLLSGLKAKEKKEVSPVTVTQQQEGSGKSNILPAAPSVPQEKLQLLSILHVPNGASLEQGKHSEIVNKL---TETSKRVCFICSQTSPTAALILCVECDQALHIHCSNPPLSRLPSFPWRCPQCLNKRRSSVTTKSVAVQTDDRTSVYLSDGSRDWLPLKLRYKPKIAGLLPPQPRRRSLPAPAVSVPFKYSRPIRLENGAVVPIRYVVDGCRAWFSDDEEQDEDYSAAYADVDAYDLPPNIKSCEYCAVRHPGTFGSGRFCSTKCARTVGGLSRRKYPEHDGTEGGDRPRGXXXXXXXXXXXXXXXXXXXXXXXSAMIANVPHEHVMHMGAEFLPDSADDSDLDANEVPSAAAL--QRNRFRRPVRNRTGGRLDFDLQSNDNSLPDASAERPPLHGSSHI-DVQGTRKTGSNAGNWYFSSQIGLEGHAAVGNDSDQPADGEDRNRIREPRTEHRFD-GRGSYEYTD--TYPHKPGKQRKRSAIHAFEAYGDSRRLSQLPPIDRIGNL-ESIDGDQPVKRVKTDRDMDSLWDSPRAYARRRIKKPAFYGSELDRRMREEANM-GTRKARPPLSKPGKGYKFCHKCSAQIANRRFYCTECGAENPSARRKVIKVPSEAKEPKPRGRPPKSSRQNGSSTLA----------AALAAAESH---------------------------LRKPYILEAEDRRVLRENGYATIEEMMANPPEEVDDLFDAYWPTRCYKLYLRIRRSQHETLTSRREDRQKSTH-IVRHVEGNSPESVSISDEDKHSHFASESAPNDEE 1072          
BLAST of Gchil8496.t1 vs. uniprot
Match: R7QR76_CHOCR (PHD-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QR76_CHOCR)

HSP 1 Score: 303 bits (775), Expect = 8.490e-85
Identity = 250/733 (34.11%), Postives = 343/733 (46.79%), Query Frame = 0
Query:  251 ISPSQVEE------RVCLSCSNGPPLRGLVPCVACDHALHIHCATPPMEHMPSYPWRCPSCL---VRKKSALETKSVAVQTDDRISNYLKDDSRTWLPAKLRNKPRMADVLPPEPKRRTLPDPAISVPFKYSRPIRLENGAVVPIRYVIDGSRAWYSDD--DEPEEDYVAAYADADAYDLPANIKSCEFCAVRHPGTFGSGRFCSTKCARTVGGLSRRKYPEFDGPDGLERPRGXXXXXXXXXXXXXXXXXXXXXXXRLLAG------------VSHDDVGQLAADFLPESPDDSDLDGNAMRTVGAAPPPKSRYGRTVRSRAGNRLDFDVPSNENSLREPSVERPLMHGSSYVGNNDAKRGVRSQANMWFYAPGKLMDRHMGTSNDSDQVVDQEEPIGIRRTKSD-HGSSFAREAYE------CNEG--GVFAHKHGKQRK--RNAVHAF------EMGDQAFPAIP-ARERMDGLHD-----------DINQSLTIKRMKTEVDGLWDSSRYARRRTKRPAYYGSEYDARDDPNIVGPGKHRRPLTKPGKGYKFCHNCGAQIANRRFFCTHCGAENPSAKRKAIKFPAEVKEPKPRGRPPKSSKTNSPMSQAPRIQEAPRPAEALRSGATHHIVGVGRPEVSVQSEEDPRPGEESRSGLGERYALQIEDLRVLRENGYGSIEEMMANPPIEVDDLFAR-YWPTRCYKLYLRITKPRKALSSRDAAVQGSSN 930
            +S S  EE      R+C  C    P   ++PC  C   +H HC  PP+  +P+YPWRCP CL     + +A   +S   QTDDR+S YL D  R WLP KLRNKP  A  LP +P+ + LP PAI+ P +Y RP+RL +GAVVPIRYV D  RA+ S D  D+  ED V  YA +D + +  N+KSCE+C+  HPGTFGSGRFCS+KCARTVGGLSRRK+ +    +  E  RG          XXXXXXXXXXXXX                     D   L    +PE  D+ D D   +     +   +SRYGR VR+R    +D +V   ENS   PS +             DA+ G +S  N+ F A  +      G S +     + E      +   D H S+   +A          EG  G   +++G QRK  RN   +F      E G + +   P A  R D  H              N++  +     E+ G   S+     R K     GS+ +    P +         + +PGKGYKFCH CG  IANRRFFCT CGA NPSAKR                       T      A  I     P    +  ++ H       E+S     DPR             AL+I++L++L   GY + + +++NPP+E  +  +  Y  T C++ Y R+ + R+  +++ A+ + SS+
Sbjct:  196 VSSSDSEEGTITGPRICQFCRKSAPSAAMIPCAECRDGMHTHCVNPPLSTIPAYPWRCPKCLKVRANRMAACMVRSAGTQTDDRVSIYLADKQRDWLPLKLRNKPNQAPCLPSKPRHKALPSPAIAPPVRYGRPVRLASGAVVPIRYVADSFRAYSSGDEADDGFEDDVI-YAASDDFQIAHNLKSCEYCSTPHPGTFGSGRFCSSKCARTVGGLSRRKFNQERRDEYAEGGRGLVVEGISNRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXERTHFSDRPTLPLGIIPED-DEDDPDPEVLPNAHVS--HRSRYGRVVRNRTPGAIDANVNGRENSSGGPSYD-------------DAEDG-KSPTNLPFQASARESASTAGWSRNVRHASELEGDTKEMQFSDDSHNSTHKMKAQSQGPHLPATEGSDGHALNENGFQRKSNRNKKRSFTYMENPENGLEMYSDQPDAMSRHDNTHSRDEPYVPQAKKHRNETRLLGTETPELAGKVSSAEQKDIRQKGTFRGGSDKNRSGKP-LTSAKSRSSGVLRPGKGYKFCHECGELIANRRFFCTLCGAANPSAKR-----------------------TPRVQVNAKDISGGKPPQHKAKGSSSKHA------ELS-----DPRKSP----------ALRIQELQLLSACGYKTEKNILSNPPVEPPENDSPPYTATVCWEAYQRVLRERRR-TAKKASTKASSS 864          
The following BLAST results are available for this feature:
BLAST of Gchil8496.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IYQ1_9FLOR4.680e-27050.30Methyl-CpG-binding domain-containing protein 9 n=1... [more]
R7QR76_CHOCR8.490e-8534.11PHD-type domain-containing protein n=1 Tax=Chondru... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 260..306
e-value: 4.9E-5
score: 32.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 247..329
e-value: 3.4E-11
score: 44.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 843..857
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 459..474
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 475..495
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..225
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 929..960
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..189
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 783..799
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 458..495
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 783..861
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 258..308
score: 8.5021
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 252..311

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000116_piloncontigtig00000116_pilon:166437..169370 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8496.t1Gchil8496.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000116_pilon 166437..169370 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8496.t1 ID=Gchil8496.t1|Name=Gchil8496.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=978bp
MPTVKLRTATPWKLDEDQSVANAQQTTKSSHNYSHIHDLVAKSSPVTMAN
TPVQLVTNAKIVSKNPDPSDAHNTDGRVSLNLRIRQHYPTTAVLSQQQPL
KITIKKTITSGQTKEVQQSKPTQGDGADQGRTLISVEQNKPNSKVEPQLQ
LPSAQQHVPQPDEADSNKQPNEYPSNLTAKLSTKDHQSGSKAIAMKEVSP
VTVTQQGDGTPGSNDDEHAPTVPHDKLRLLPILPVPNASVTTHKSILDSR
ISPSQVEERVCLSCSNGPPLRGLVPCVACDHALHIHCATPPMEHMPSYPW
RCPSCLVRKKSALETKSVAVQTDDRISNYLKDDSRTWLPAKLRNKPRMAD
VLPPEPKRRTLPDPAISVPFKYSRPIRLENGAVVPIRYVIDGSRAWYSDD
DEPEEDYVAAYADADAYDLPANIKSCEFCAVRHPGTFGSGRFCSTKCART
VGGLSRRKYPEFDGPDGLERPRGRGRGRGRGRGRGRGRGRRGRGRARLLA
GVSHDDVGQLAADFLPESPDDSDLDGNAMRTVGAAPPPKSRYGRTVRSRA
GNRLDFDVPSNENSLREPSVERPLMHGSSYVGNNDAKRGVRSQANMWFYA
PGKLMDRHMGTSNDSDQVVDQEEPIGIRRTKSDHGSSFAREAYECNEGGV
FAHKHGKQRKRNAVHAFEMGDQAFPAIPARERMDGLHDDINQSLTIKRMK
TEVDGLWDSSRYARRRTKRPAYYGSEYDARDDPNIVGPGKHRRPLTKPGK
GYKFCHNCGAQIANRRFFCTHCGAENPSAKRKAIKFPAEVKEPKPRGRPP
KSSKTNSPMSQAPRIQEAPRPAEALRSGATHHIVGVGRPEVSVQSEEDPR
PGEESRSGLGERYALQIEDLRVLRENGYGSIEEMMANPPIEVDDLFARYW
PTRCYKLYLRITKPRKALSSRDAAVQGSSNDIVHEVHEQSPESASLSEED
KQSLFSDGIPQADEDAADVGIVDMGAN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD