Gchil8330.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8330.t1
Unique NameGchil8330.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length170
Homology
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BLAST of Gchil8330.t1 vs. uniprot
Match: A0A2V3IHN8_9FLOR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHN8_9FLOR)

HSP 1 Score: 150 bits (378), Expect = 7.160e-39
Identity = 79/167 (47.31%), Postives = 115/167 (68.86%), Query Frame = 0 
Query:    1 MDTVSRYSVGSVVPDTTISSAIVSFDSQWILPFGPPGKVFYDPAFKTVELKKYLSGYGIDTKSLHLRRRNKNVIESNHRIIRDIYLRLKHSNSTMDILNPSLLVQQSLYISNELNGNNLMSAHELAKGYTRPLVSSTSLDTIPEDIVHAQKALHVRHKLSLILRSKS 167
            M+  SRYS G +VP+T+++ AI + ++ WI PF     V +DPAF    L  YL+  GI  + +  +R NKNV+ES H++IRDI  RLKH++S+       LL+QQSL I N+L GN+L+SA+ELAKG+TRP++S  +   +P++IV A +AL  + KL+LILRSK+
Sbjct:    1 MEAHSRYSAGLIVPNTSMAHAISALETVWISPFWISPAVLFDPAFHNDPLPTYLNSLGIHPRPIPPQRHNKNVLESKHKVIRDISERLKHASSSTTPTQLPLLIQQSLRICNDLYGNDLLSAYELAKGFTRPVISMAATIIVPDEIVKAHQALVTKRKLTLILRSKA 167
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BLAST of Gchil8330.t1 vs. uniprot
Match: A0A2V3ISC9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISC9_9FLOR)

HSP 1 Score: 82.8 bits (203), Expect = 8.120e-17
Identity = 40/88 (45.45%), Postives = 59/88 (67.05%), Query Frame = 0 
Query:    1 MDTVSRYSVGSVVPDTTISSAIVSFDSQWILPFGPPGKVFYDPAFKTVELKKYLSGYGIDTKSLHLRRRNKNVIESNHRIIRDIYLRL 88
            MD  +RYS G +VP+T+++ AI +F++ WI PF  P  V + PAF++     YL+  GI  + +  RR NKNV+ES H++IRDI+ RL
Sbjct:   86 MDADTRYSAGIIVPNTSMAHAISAFEAVWISPFWIPAAVLFHPAFQSDPFTSYLNSLGIHPRPILPRRHNKNVLESKHKVIRDIFERL 173
The following BLAST results are available for this feature:
BLAST of Gchil8330.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IHN8_9FLOR7.160e-3947.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2V3ISC9_9FLOR8.120e-1745.45Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..128
e-value: 3.3E-5
score: 25.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:2026012..2026521 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8330.t1Gchil8330.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004384_pilon 2026012..2026521 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8330.t1 ID=Gchil8330.t1|Name=Gchil8330.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=170bp
MDTVSRYSVGSVVPDTTISSAIVSFDSQWILPFGPPGKVFYDPAFKTVEL
KKYLSGYGIDTKSLHLRRRNKNVIESNHRIIRDIYLRLKHSNSTMDILNP
SLLVQQSLYISNELNGNNLMSAHELAKGYTRPLVSSTSLDTIPEDIVHAQ
KALHVRHKLSLILRSKSLA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf