Gchil8289.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8289.t1
Unique NameGchil8289.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length376
Homology
BLAST of Gchil8289.t1 vs. uniprot
Match: A0A2V3IXQ6_9FLOR (Protein PIN-LIKES 5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXQ6_9FLOR)

HSP 1 Score: 357 bits (917), Expect = 4.690e-119
Identity = 188/341 (55.13%), Postives = 240/341 (70.38%), Query Frame = 0
Query:   45 VFVAMLGTVQNAINHSHDGKTQASAQELWIPLCFSVIISLAMMVVAYPLSTMLARNKSEFTKRVIFMCIVLGNCNSMPLLIMQSLCDGYQPLRSNEQCFMKATAYGTLYISFVTFLG----------AAQAMNQEEQSLLGETYPSPPKEAKLDTRTILKQCLLSPPTVAMAVTGLLACIPGVANEFLKENGTLRPVMDSFAMVGSIAVPLSSVIVGGDLYEALTAPKTNGDSRRRFGRNAIFAICMVRLVLFPFLGRWVYKLVGLRDFIADDELGAFILVQFGVLTANNAMIIANLLEDTLPDHVDGVRLDVAKCLFVQYLLAPILVTINTAFALEIQYS 375
            +F+AML T+       +D + +AS+QE WIPL FSV++S+  MVV + LS  LARNK+EFTKR IFMCIVLGN NSMPLLIM+SLCD +QPL+  E CFMKAT YGTLY +F  FLG          A      EEQ LLGET P   K    D  T++K+ LL+PPT  + +T  L  IPG A+ FLK+N  LR V ++  +VGS+AVP+SSVIVGGDLYE+LT+ +   D R+ FG   +  IC++RLVLFPF+GRW+Y   GL+DFIA  ELG F+L +FGV+TANNAMIIA ++    P   + ++ DVAKCLF+QYL+AP+LVT+NTA AL+IQY 
Sbjct:   14 IFIAMLDTL-------NDSEGKASSQEWWIPLFFSVVVSIITMVVGFLLSRALARNKAEFTKRTIFMCIVLGNSNSMPLLIMKSLCDSFQPLQEKELCFMKATTYGTLYNTFFIFLGFSVIYPYVLDADDDQEHEEQPLLGETPPRQRKTLTCDFITVIKRSLLAPPTATVILTSSLRWIPGFADVFLKDNSPLRSVTEAIELVGSVAVPMSSVIVGGDLYESLTSHRKCSDHRKEFGNGIVAMICLIRLVLFPFVGRWLYTYFGLQDFIALKELGVFMLTEFGVVTANNAMIIAGIITAMYPRRGETMKRDVAKCLFLQYLVAPVLVTLNTALALQIQYD 347          
BLAST of Gchil8289.t1 vs. uniprot
Match: A0A2V3ISQ9_9FLOR (Protein PIN-LIKES 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISQ9_9FLOR)

HSP 1 Score: 241 bits (616), Expect = 8.420e-73
Identity = 147/415 (35.42%), Postives = 232/415 (55.90%), Query Frame = 0
Query:    1 MEAFATVFQVSFGGSVELLTLCAAGAALSHLGHWNAKVSAALSN----------VFVAMLGTVQNAINHSHDGKTQASA-QELWIPLCFSVIISLAMMVVAYPLSTMLARNKSEFTKRVIFMCIVLGNCNSMPLLIMQSLCDGYQPLRSNEQCFMKATAYGTLYISFVTFLG-------------AAQAMNQEEQSLLGETYPSPPKEAKLDTRTI-----------LKQCLLSPPTVAMAVTGLLACIPGVANEFLKENGTLRPVMDSFAMVGSIAVPLSSVIVGGDLYEALTAPKTNGDSRRR-----FGRNAIFAICMVRLVLFPFLGRWVYKLVGLRDFIADDELGAFILVQFGVLTANNAMIIANLLEDTLPDHVDGVRLDVAKCLFVQYLLAPILVTINTAFALEIQYS 375
            M   A +   S GGSVELLTL + GA L H+G +   V++ALS           VF ++L T  +A+    +     SA QE+W+P+  ++II +   ++A+P++ ++AR+K E  KR IF C++LGN N+MPLL+MQSLCD + PL+   QC+ K+  Y +L+++ V  +              ++ A + EE +LL +  P+P     LD   +           + + L+SPP +A+  +   A IPG+ + FL E G LRP + S  +VG I VP+S +IVG +LY +L +   + +  +R     FG      I  VR+VL P + R +Y+     + + +  LG F LV+F V TANN +I+ ++  ++LP     +R DV+K +F Q+L  PI +T+NTA AL +Q+S
Sbjct:    1 MSTAAQILGSSIGGSVELLTLSSVGALLVHIGVFQQAVTSALSRAVYLIFIPALVFGSILETTHSALKSVRETNGDPSALQEIWVPVVLALIIYVITAIIAFPVTRLIARSKQEAVKRAIFACLILGNANTMPLLVMQSLCDTFLPLQQGGQCYPKSMGYASLFLTVVNIVSWTALFQYLMYAPDSSLAASDEEHALL-QPRPAPQHIRPLDHEDVDVSRPDPVKEAIMRALVSPPFIAVVSSMTCAIIPGLGDAFLHEQGLLRPFLLSINIVGGIVVPVSCMIVGSELYRSLASSSEDEELVKRRPQEQFGTQTFVVILFVRMVLLPLVAREIYRAFNFSERVHNHLLGIFGLVEFNVPTANNTVIMISIAAESLPRIGRQLRQDVSKAVFWQFLATPIFLTLNTAAALNLQFS 414          
BLAST of Gchil8289.t1 vs. uniprot
Match: A0A2V3J3L9_9FLOR (Protein PIN-LIKES 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3L9_9FLOR)

HSP 1 Score: 218 bits (556), Expect = 5.970e-64
Identity = 134/408 (32.84%), Postives = 216/408 (52.94%), Query Frame = 0
Query:    1 MEAFATVFQVSFGGSVELLTLCAAGAALSHLGHWNAKVSAALSN----------VFVAMLGTVQNAINHSHDGKTQASAQELWIPLCFSVIISLAMMVVAYPLSTMLARNKSEFTKRVIFMCIVLGNCNSMPLLIMQSLCDGYQPLRSNEQCFMKATAYGTLYISFVTFLG------------AAQAMNQEEQSLLGET-------YPSPPKEAKLDTRTILKQCLLSPPTVAMAVTGLLACIPGVANEFLKENGTLRPVMDSFAMVGSIAVPLSSVIVGGDLYEALTAPKTNGD----SRRRFGRNAIFAICMVRLVLFPFLGRWVYKLVGLRDFIADDELGAFILVQFGVLTANNAMIIANLLEDTLPDHVDGVRLDVAKCLFVQYLLAPILVTINTAFALEIQYS 375
            M + + + Q S  GSVELLTLCAAGA L H   ++A V+  LS           VF ++L T  +AI      +   + Q++W+P+  + ++     + AYP++ ++A  K +  +R +F C+VLGN N MPLL+MQSLCD + PL     C+ K+  Y +L+++ +  +              +    +EE  LL +T       +P    E +      +K+ L S   +A+     +A +  + N FL ++G LRP + S  ++G++ VP++S+IVG +LY +L   +            FG +    I   RLV FP++ R +Y L+GL   + D  LG F LV+F   TAN  +++ +++   LP   D +R DVAK +F Q+L  PI +T+NTA AL +QY+
Sbjct:    1 MASSSRILQSSLSGSVELLTLCAAGALLVHTQVFDADVTTQLSRAMKNLFIPALVFGSILHTAHSAIETLITSRDSIALQQIWVPVALAFLVFGMAAIFAYPITKLIASGKQQAVQRAVFACLVLGNANVMPLLVMQSLCDTFPPLMRTPHCYDKSMGYASLFLTVINIISWTVLYQFLRDSKDSDHFREEEAPLLSQTGFRSSINHPMDLDEPRAPIIDAIKRVLCSHIFLAVVAALAIAIVYPLGNAFLDDDGVLRPFLLSINILGNVVVPVNSLIVGAELYNSLYGCRDEDRYIKYKDEEFGSSTFLVILFWRLVAFPWIARILYVLLGLDSKLGDPLLGIFGLVEFNNPTANTTVMLISVVSTRLPRIGDQLRYDVAKTVFWQFLATPIFLTLNTAAALHLQYA 408          
BLAST of Gchil8289.t1 vs. uniprot
Match: A0A2C9WD10_MANES (Uncharacterized protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9WD10_MANES)

HSP 1 Score: 60.5 bits (145), Expect = 1.980e-6
Identity = 77/310 (24.84%), Postives = 129/310 (41.61%), Query Frame = 0
Query:   72 LWIPLCFSVIISLAMMVVAYPLSTMLARNKS--EFTKRVIFMCIVLGNCNSMPLLIMQSLC-DGYQPLRSNEQCFMKATAYGTL-----------YISFVTFLGAAQA----------MNQEEQSLLGETYPSPPK----------------------------EAKLDTRTILKQC----LLSPPTVAMAVTGLLACIPGVANEFLKENGTLRPVMDSFAMVGSIAVPLSSVIVGGDLYEALTAPKTNGDSRRRFGRNAIFAICMVRLVLFPFLGRWVYKLVGLRDFIADDELGAFILV-QFGVLTANN 324
            LW  + F+++++    +V   L  ML +  S  +  K +I  C   GN  ++PL+++ ++C +   P  S + C+    AY +L           Y+  +  + +++            N E   L+ E Y +  +                            + K+ TR I ++     L +P T    V  ++  IP +   F+  +  LR V DS  +VG+ A+P++++IVGG+L + L        S  RF    I  I  VR VL P LG  + K       +  D L  FIL+ QF V  A N
Sbjct:   72 LWF-MPFNILVTF---IVGSALGWMLIKITSPPKHLKGLILGCCAAGNMGNLPLIVIPAICKEKGSPFGSPDVCYTYGIAYASLSMAIGAVYLWSYVYNIIRICSSEINQEVADVDVKANGEAPKLVQENYYNSEELTYGLLLPDNTDSQTNIKTFSRTRIVWDKIKIWTRMISEKLNLKSLFAPSTSGAVVGFVIGVIPQIRTLFIGASAPLRVVEDSAFLVGNAAIPVTTLIVGGNLLKGLKG------SGIRF--TLIVGILAVRFVLLPLLGIVIVKSAVQFGLVHSDPLYQFILLLQFAVPPAMN 369          
BLAST of Gchil8289.t1 vs. uniprot
Match: A0A7J7P4K1_9MAGN (Uncharacterized protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7P4K1_9MAGN)

HSP 1 Score: 59.3 bits (142), Expect = 4.720e-6
Identity = 41/138 (29.71%), Postives = 67/138 (48.55%), Query Frame = 0
Query:  195 QCLLSPPTVAMAVTGLLACIPGVANEFLKENGTLRPVMDSFAMVGSIAVPLSSVIVGGDLYEALTAPKTNGDSRRRFGRNAIFAICMVRLVLFPFLGRWVYKLVGLRDFIADDELGAFILV-QFGVLTANNAMIIANL 331
            Q LLSP      V  ++  IP +    + ++  LR + +S  +VG  A+P+ ++I+GG+L + L  P+          ++ I  I +VR +L P +G  V K      F+  D L  F+L+ QF +  A N   I  L
Sbjct:  250 QRLLSPSICGAIVGFIIGLIPQIRKTVIGDSAPLRVIQNSADLVGEGAIPVLTLIIGGNLLKGLKGPQMQ--------KSVIVGIMVVRYILLPLIGIAVVKGAHHIGFVHSDPLYQFVLMLQFALPPAANISTITQL 379          
BLAST of Gchil8289.t1 vs. uniprot
Match: UPI001262AD66 (protein PIN-LIKES 1-like isoform X1 n=2 Tax=Pistacia vera TaxID=55513 RepID=UPI001262AD66)

HSP 1 Score: 58.2 bits (139), Expect = 9.890e-6
Identity = 56/237 (23.63%), Postives = 102/237 (43.04%), Query Frame = 0
Query:  103 EFTKRVIFMCIVLGNCNSMPLLIMQSLC-DGYQPLRSNEQCFMKATAYGTL-----------YISFVTFLGAAQAMNQEEQSLLGETYPSPPKEAKLDTRTILKQCLLSPPT--VAMAVTGLLACIPGVANEFLKENGTLRPVMDSFAMVGSIAVPLSSVIVGGDLYEALTAPKTNGDSRRRFGRNAIFAICMVRLVLFPFLGRWVYKLVGLRDFIADDELGAFILV-QFGVLTANN 324
            +  K +I  C   GN  ++P++I+ ++C +   P  + E C+    AY +L           Y+  +  + +++  N++ +  L  T  S     K       +  L+   T  +   V  L+  +P + N  +     LR + DS +++G  A+P+ S++VGG+L   L   K +G          I  I  VR ++ P LG  + K       +    L  F+L+ Q+ V  A N
Sbjct:  101 QHLKGLILGCCSAGNLGNLPIIIIPAVCREKGSPFGAPETCYKYGMAYVSLSMAIGAVYFWSYVYNIVRVSSSKVNNEDNREELPSTMNSAEGTPKFLQGDYTEAPLVCTKTEGIEKVVGFLIGVVPQIRNLMIGGTAPLRVITDSASLLGDAAIPIVSLVVGGNLLRGL---KGSGIEV-----CVIVGIIAVRYIVLPLLGIVIVKGAVRVGMVHSHPLYQFVLLLQYAVPPAMN 329          
The following BLAST results are available for this feature:
BLAST of Gchil8289.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IXQ6_9FLOR4.690e-11955.13Protein PIN-LIKES 5 n=1 Tax=Gracilariopsis chorda ... [more]
A0A2V3ISQ9_9FLOR8.420e-7335.42Protein PIN-LIKES 3 n=1 Tax=Gracilariopsis chorda ... [more]
A0A2V3J3L9_9FLOR5.970e-6432.84Protein PIN-LIKES 3 n=1 Tax=Gracilariopsis chorda ... [more]
A0A2C9WD10_MANES1.980e-624.84Uncharacterized protein n=1 Tax=Manihot esculenta ... [more]
A0A7J7P4K1_9MAGN4.720e-629.71Uncharacterized protein n=1 Tax=Kingdonia uniflora... [more]
UPI001262AD669.890e-623.63protein PIN-LIKES 1-like isoform X1 n=2 Tax=Pistac... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004776Membrane transport proteinPFAMPF03547Mem_transcoord: 68..162
e-value: 4.9E-7
score: 28.5
IPR045033Protein PIN-LIKES 1/3/4/5/7PANTHERPTHR31651FAMILY NOT NAMEDcoord: 6..368
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 223..233
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 234..255
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 167..202
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 108..125
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 203..222
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 146..166
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 94..107
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 275..297
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 126..145
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 371..375
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 309..332
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 352..370
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 256..274
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 333..351
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..71
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 298..308
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 72..93
NoneNo IPR availableTMHMMTMhelixcoord: 72..94
NoneNo IPR availableTMHMMTMhelixcoord: 276..295
NoneNo IPR availableTMHMMTMhelixcoord: 146..163
NoneNo IPR availableTMHMMTMhelixcoord: 196..218
NoneNo IPR availableTMHMMTMhelixcoord: 233..255
NoneNo IPR availableTMHMMTMhelixcoord: 107..126
NoneNo IPR availableTMHMMTMhelixcoord: 310..332
NoneNo IPR availableTMHMMTMhelixcoord: 352..374
NoneNo IPR availableTMHMMTMhelixcoord: 39..57
NoneNo IPR availableTMHMMTMhelixcoord: 10..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:1168059..1169560 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8289.t1Gchil8289.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004384_pilon 1168059..1169560 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8289.t1 ID=Gchil8289.t1|Name=Gchil8289.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=376bp
MEAFATVFQVSFGGSVELLTLCAAGAALSHLGHWNAKVSAALSNVFVAML
GTVQNAINHSHDGKTQASAQELWIPLCFSVIISLAMMVVAYPLSTMLARN
KSEFTKRVIFMCIVLGNCNSMPLLIMQSLCDGYQPLRSNEQCFMKATAYG
TLYISFVTFLGAAQAMNQEEQSLLGETYPSPPKEAKLDTRTILKQCLLSP
PTVAMAVTGLLACIPGVANEFLKENGTLRPVMDSFAMVGSIAVPLSSVIV
GGDLYEALTAPKTNGDSRRRFGRNAIFAICMVRLVLFPFLGRWVYKLVGL
RDFIADDELGAFILVQFGVLTANNAMIIANLLEDTLPDHVDGVRLDVAKC
LFVQYLLAPILVTINTAFALEIQYS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004776Mem_trans
IPR045033PILS1/3/4/5/7