Gchil8254.t3 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8254.t3
Unique NameGchil8254.t3
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length259
Homology
BLAST of Gchil8254.t3 vs. uniprot
Match: R7QG36_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG36_CHOCR)

HSP 1 Score: 231 bits (588), Expect = 1.270e-66
Identity = 125/255 (49.02%), Postives = 166/255 (65.10%), Query Frame = 0
Query:    1 MRWRLRLAEYDFEVIYKKGTQNAQADALSRLPTNGEALAVDDEDIPCFVVD--DGTPGNPDWLHDKWNESPESDDDIDALLVSDDSKKPPPGD-FVPIPPEEMVREQQGDPFCTKIRAWLNGVAQLPFEVNDLGYVVRTVQSSPQVMVPHTLQSSVLHLSHYAKLGGHAGGRKLYLTLRRNFYWPAMAVDCYATVRFCTECAKNRVKLRKYSTKLKLFPARAPLEFVAIDTLGEFLTTRRGHKFLIVITDRFSKL 252
            +RWRLRL+E+DFE+ YKKG  N+QADALSRL T GE +   D++IPCF+ +  +GT            E+ ES D ID +L  +    P   D F  + PEE++REQ  DPFC +I+           E  D G  V       Q+++P +L+  VL LSHYAKL GH GGRKLY TLRR FYW  MA+DCYA  + C  CA+ RVKLRK + ++KLF ++APLEF AID LGE +TT+RG+++++VI+DR+SKL
Sbjct:  235 IRWRLRLSEFDFEIKYKKGKGNSQADALSRLRTAGETVDEIDDEIPCFMAEPAEGTV-----------ENEESFDAIDDILALEGGTAPDRLDQFQAVTPEELIREQAVDPFCNRIK-----------EEIDAGKFV-------QLVIPQSLKDRVLGLSHYAKLAGHPGGRKLYKTLRRYFYWSTMALDCYAVAKNCAACARERVKLRKNTKEMKLFTSKAPLEFAAIDILGELITTKRGNRYILVISDRYSKL 460          
BLAST of Gchil8254.t3 vs. uniprot
Match: R7Q4V7_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4V7_CHOCR)

HSP 1 Score: 213 bits (543), Expect = 1.280e-61
Identity = 117/256 (45.70%), Postives = 156/256 (60.94%), Query Frame = 0
Query:    1 MRWRLRLAEYDFEVIYKKGTQNAQADALSRLPTNGEALAVDDEDIPCFVVDDGTPGNPDWLHDKWNESPESDDDIDALLVSDDSKKPPPGD-FVPIPPEEMVREQQGDPFCTKIRAWLNG--VAQLPFEVNDL-GYVVRTVQSSPQVMVPHTLQSSVLHLSHYAKLGGHAGGRKLYLTLRRNFYWPAMAVDCYATVRFCTECAKNRVKLRKYSTKLKLFPARAPLEFVAIDTLGEFLTTRRGHKFLIVITDRFSKL 252
            +RWRLRL+E+DF++ YKKG  N+QADALSRL T GE                    N D             D +D +L  +    P   D F  + PEE++REQ  DPFC  I+  ++   V     E  +L G + RT     QV++P +++  VL LSHYAKL GH GGRKLY TLRR FYWP MA+DCYA  + C  CA+ RVKLR+ + ++KLF  +APLEFVAID LGE + T+RG+++++VI+DR+SKL
Sbjct:  203 IRWRLRLSEFDFKIKYKKGKANSQADALSRLRTAGET-------------------NEDRF-----------DALDDILALEGGTAPDRFDQFQAVTPEELIREQAVDPFCNCIKEEMDAGKVRTFSMETEELEGTLCRTAAEFVQVVIPQSVRDRVLGLSHYAKLAGHPGGRKLYKTLRRYFYWPTMALDCYAVAKNCAACARERVKLRRNTKEMKLFTPKAPLEFVAIDILGELIITKRGNRYILVISDRYSKL 428          
BLAST of Gchil8254.t3 vs. uniprot
Match: R7QL13_CHOCR (Integrase catalytic domain-containing protein n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QL13_CHOCR)

HSP 1 Score: 207 bits (528), Expect = 2.240e-60
Identity = 117/255 (45.88%), Postives = 152/255 (59.61%), Query Frame = 0
Query:    1 MRWRLRLAEYDFEVIYKKGTQNAQADALSRLPTNGEALAVDDEDIPCFVVD--DGTPGNPDWLHDKWNESPESDDDIDALLVSDDSKKPPPGDFVPIPPEEMVREQQGDPFCTKIRAWLNGVAQLPFEVNDL-GYVVRTVQSSPQVMVPHTLQSSVLHLSHYAKLGGHAGGRKLYLTLRRNFYWPAMAVDCYATVRFCTECAKNRVKLRKYSTKLKLFPARAPLEFVAIDTLGEFLTTRRGHKFLIVITDRFSKL 252
            +RWRLRL E+DFE+ YKKG  N+QADALSRL T GE +   D +IPCF  +  +GT            E  ES D  D +L  +    P          + + + Q    F T              E  +L G + RT     QV++P +L+  VL LSHYAKL GH GGRKLY TLRR FYWP MA+DCYA  + C  CA+ RVK RK + ++KLF  +APLEFVAID LGE +TT+RG+++++VI+DR+SKL
Sbjct:  230 IRWRLRLPEFDFEIKYKKGKANSQADALSRLRTAGETVDEIDNEIPCFTAEPAEGTV-----------EDEESIDAADDILALEGGTAP----------DRLDQFQAVRTFST--------------ETEELEGTLCRTAVEFVQVVIPQSLRDRVLGLSHYAKLAGHPGGRKLYKTLRRYFYWPTMALDCYAVAKNCAACARERVKFRKNTKEMKLFTPKAPLEFVAIDILGELITTKRGNRYILVISDRYSKL 449          
BLAST of Gchil8254.t3 vs. uniprot
Match: R7Q5U0_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5U0_CHOCR)

HSP 1 Score: 196 bits (499), Expect = 6.770e-56
Identity = 112/256 (43.75%), Postives = 147/256 (57.42%), Query Frame = 0
Query:    1 MRWRLRLAEYDFEVIYKKGTQNAQADALSRLPTNGEALAVDDEDIPCFVVDDGTPGNPDWLHDKWNESPESDDDIDALLV----SDDSKKPPPGDFVPIPPEEMVREQQGDPFCTKIRAWLNGVAQLPFEVNDLGYVVRTVQSSPQVMVPHTLQSSVLHLSHYAKLGGHAGGRKLYLTLRRNFYWPAMAVDCYATVRFCTECAKNRVKLRKYSTKLKLFPARAPLEFVAIDTLGEFLTTRRGHKFLIVITDRFSKL 252
            MRWRLRL E+DF+V YKKG  N QADALSRL T+GE     DE+IPCF+         D   D + +   +    DA+L     S D          PI  EEM+R                            G +VR V ++PQV+ P   Q+ +L++ H+A L GH  GRK++ TL R+ YWP++AVDCY T R C  CAK RVKLR+ + +LKLFPA APL+ ++ID LGE + T RG ++L+VITDRFS+L
Sbjct:  252 MRWRLRLGEFDFDVKYKKGKLNTQADALSRLFTSGETTVPVDEEIPCFLGRFSEMEPVDKFSDDFEDLESA--RFDAILTRERYSTDENL-----LDPITREEMLRG---------------------------GVLVRNVNATPQVVAPQDFQARILYMGHHALLAGHPRGRKMFYTLTRDCYWPSLAVDCYVTARNCIHCAKERVKLRRKTKRLKLFPATAPLKLLSIDLLGELIRTPRGIRWLLVITDRFSRL 473          
BLAST of Gchil8254.t3 vs. uniprot
Match: R7QFB9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFB9_CHOCR)

HSP 1 Score: 191 bits (484), Expect = 4.110e-52
Identity = 106/255 (41.57%), Postives = 139/255 (54.51%), Query Frame = 0
Query:    1 MRWRLRLAEYDFEVIYKKGTQNAQADALSRLPTNGEALAVDDEDIPCFVVDDGTPGNPDWLHDKWNESPESDDDIDALLVSDDSKKPPPGDFVPIPPEEMVREQQGDPFCTKIRAWLNG--VAQLPFEVNDL-GYVVRTVQSSPQVMVPHTLQSSVLHLSHYAKLGGHAGGRKLYLTLRRNFYWPAMAVDCYATVRFCTECAKNRVKLRKYSTKLKLFPARAPLEFVAIDTLGEFLTTRRGHKFLIVITDRFSKL 252
            +RWRLRL+E+DFE+ YKKG  N+QADALSRL T  E L                                                              +REQ  DPFC +I+  ++   V     E  +  G + RT     QV++P +L+  VL LSHYAKL G  GGRKLY TLRR FYWP MA+DCYA  + C  CA+ RVKLR+ + ++KLF  +APLEFVAID LGE +T +RG+++++VI+DR+SKL
Sbjct:  265 IRWRLRLSEFDFEIKYKKGKANSQADALSRLRTAEETL--------------------------------------------------------------IREQAVDPFCNRIKEEMDAGKVRTFSMETEEFEGTLCRTAAEFAQVVIPQSLRDRVLSLSHYAKLAGRPGGRKLYKTLRRYFYWPTMALDCYAVAKNCAACARERVKLRRNTKEMKLFTPKAPLEFVAIDILGEQITRKRGNRYILVISDRYSKL 457          
BLAST of Gchil8254.t3 vs. uniprot
Match: R7QCX0_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCX0_CHOCR)

HSP 1 Score: 184 bits (467), Expect = 7.080e-52
Identity = 105/254 (41.34%), Postives = 143/254 (56.30%), Query Frame = 0
Query:    1 MRWRLRLAEYDFEVIYKKGTQNAQADALSRLPTNGEALAVDDEDIPCFVVD--DGTPGNPDWLHDKWNESPESDDDIDALLVSDDSKKPPPGDFVPIPPEEMVREQQGDPFCTKIRAWLNGVAQLPFEVNDLGYVVRTVQSSPQVMVPHTLQSSVLHLSHYAKLGGHAGGRKLYLTLRRNFYWPAMAVDCYATVRFCTECAKNRVKLRKYSTKLKLFPARAPLEFVAIDTLGEFLTTRRGHKFLIVITDRFSKL 252
            +RWRLRL+E+DFE+ YKKG  N+QADALSRL T GE +   D++I CF+ +  +GT               E +D+ DAL                   ++++  + G P    I + L+                                  VL LSHYAKL GH GGRKLY TLRR FYWP MA++CYA  + C  CA+ RVKLR+ + ++KLF  +APLEFVAID LGE +TT+RG+++++VI+DR+SKL
Sbjct:  191 IRWRLRLSEFDFEIKYKKGKANSQADALSRLQTAGETVDEIDDEILCFMAEPAEGTV--------------EDEDNSDAL-------------------DDILAFKGGPPLIASINSKLD---------------------------------RVLGLSHYAKLAGHPGGRKLYKTLRRYFYWPTMALNCYAVAKNCATCARERVKLRRNTKQMKLFTPKAPLEFVAIDILGELITTKRGNRYILVISDRYSKL 378          
BLAST of Gchil8254.t3 vs. uniprot
Match: R7QNI8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNI8_CHOCR)

HSP 1 Score: 185 bits (470), Expect = 6.230e-50
Identity = 104/253 (41.11%), Postives = 144/253 (56.92%), Query Frame = 0
Query:    2 RWRLRLAEYDFEVIYKKGTQNAQADALSRLPTNGEALAVDDEDIPCFVVDDGTPGNPDWLHDKWNESPESDDDIDALLVSDDSKKPPPGDFVPIPPEEMVREQQGDPFCTKIRAWLNGVAQLPFEVNDLGYVVRT--VQSSPQVMVPHTLQSSVLHLSHYAKLGGHAGGRKLYLTLRRNFYWPAMAVDCYATVRFCTECAKNRVKLRKYSTKLKLFPARAPLEFVAIDTLGEFLTTRRGHKFLIVITDRFSKL 252
            RWRLRLAEYD +V Y KG +N  ADALSR+P+ G      DE+IPC+ V +          D+     E+ D  D +                       R ++G+ F    R+         F VN    V R   +    Q++VP TL+  +L+LSHY    GH GGR+L+ TLR+ FYWP+M+VD Y+TVR C +CAK R+ LRK++++LK FP   PLE++AID LGE   T RG+++L+V+TDR+SKL
Sbjct:  223 RWRLRLAEYDSDVTYVKGIKNCLADALSRIPSTGGTTVPIDEEIPCYSVMN--------FDDEPQHHEETYDPTDEVTS---------------------RLEKGEGFAELRRS--------RFFVNQERLVCRKAHLDGVEQIVVPTTLRERLLYLSHYPATSGHLGGRRLFYTLRQRFYWPSMSVDSYSTVRMCPDCAKARINLRKHNSELKTFPPSGPLEYIAIDILGELPRTPRGNRYLLVMTDRYSKL 438          
BLAST of Gchil8254.t3 vs. uniprot
Match: R7QLF2_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLF2_CHOCR)

HSP 1 Score: 178 bits (451), Expect = 1.900e-47
Identity = 103/255 (40.39%), Postives = 149/255 (58.43%), Query Frame = 0
Query:    2 RWRLRLAEYDFEVIYKKGTQNAQADALSRLPTNGEALAVDDEDIPCFVVD--DGTPGNPDWLHDKWNESPESDDDIDALLVSDDSKKPPPGDFVPIPPEEMVREQQGDPFCTKIRAWLNGVAQLPFEVNDLGYVVRT--VQSSPQVMVPHTLQSSVLHLSHYAKLGGHAGGRKLYLTLRRNFYWPAMAVDCYATVRFCTECAKNRVKLRKYSTKLKLFPARAPLEFVAIDTLGEFLTTRRGHKFLIVITDRFSKL 252
            RWRLRLAEY++EV Y+ G ++  AD +SRL T+G      D+++ CFVV   +G+      +H  W+ + +  D    L V+ + +     D   I     +REQ  D FC +  A   G     F+V+  G++VR   +  + Q +VP+ L+  VL+L+H+ +L GH GG ++Y TLRR +YWP +A D +ATVR CT  A  R  L K    L+LFPA  P+EFVA+D LG    T  G++ ++VITDRFSKL
Sbjct:  289 RWRLRLAEYNYEVQYRPGVKHQLADGVSRLRTDGGDTTPVDDEVSCFVVQSQEGSASLLGKVH--WDLTQDRPDGFYVLAVTPEER-----DVSSISVANFLREQADDAFC-RAAADTVGEPNSKFDVDRYGFLVRKSPLDGTLQRVVPNRLRPRVLYLAHHPRLAGHPGGTRMYYTLRREYYWPHLASDAFATVRNCTSWAATRGTLFKNQKDLRLFPAAGPMEFVAMDLLGPLPKTAHGNQHVLVITDRFSKL 535          
BLAST of Gchil8254.t3 vs. uniprot
Match: R7QG64_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG64_CHOCR)

HSP 1 Score: 170 bits (431), Expect = 9.290e-47
Identity = 99/252 (39.29%), Postives = 128/252 (50.79%), Query Frame = 0
Query:    1 MRWRLRLAEYDFEVIYKKGTQNAQADALSRLPTNGEALAVDDEDIPCFVVDDGTPGNPDWLHDKWNESPESDDDIDALLVSDDSKKPPPGDFVPIPPEEMVREQQGDPFCTKIRAWLNGVAQLPFEVNDLGYVVRTVQSSPQVMVPHTLQSSVLHLSHYAKLGGHAGGRKLYLTLRRNFYWPAMAVDCYATVRFCTECAKNRVKLRKYSTKLKLFPARAPLEFVAIDTLGEFLTTRRGHKFLIVITDRFSKL 252
            +RWRLRL+E+DFE+ YKKG  N+QADALSRL T G  +    ++IP                                                                            L FE    G + RT     QV++P +L+  +L LSHYAKL GH G RKLY TLRR FYWP MA+DCYA  +   ECA+ RVKLR+ + ++KLF   APLEFVAID L E +TT+RG+ +++VI+DR+SKL
Sbjct:  186 IRWRLRLSEFDFEIKYKKGKANSQADALSRLLTQGGTVDEISDEIP----------------------------------------------------------------------------LEFE----GTLCRTAAEFVQVVIPQSLRDRILGLSHYAKLAGHPGDRKLYKTLRRYFYWPTMALDCYAAAKNSAECARERVKLRRNTKEMKLFTPNAPLEFVAIDILEELITTKRGNGYILVISDRYSKL 357          
BLAST of Gchil8254.t3 vs. uniprot
Match: R7QJW9_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJW9_CHOCR)

HSP 1 Score: 172 bits (437), Expect = 7.490e-46
Identity = 98/247 (39.68%), Postives = 129/247 (52.23%), Query Frame = 0
Query:    3 WRLRLAEYDFEVIYKKGTQNAQADALSRLPTNGEALAVDDEDIPCFVVDDGTPGNPDWLHDKWNESPESDDDIDALLVSDDSKKPPPGDFVPIPPEEMVREQQGDPFCTKIRAWLNGVAQLPFEVNDLGYVVRTVQSSPQVMVPHTLQSSVLHLSHYAKLGGHAGGRKLYLTLRRNFYWPAMAVDCYATVRFCTECAKNRVKLRKYSTKLKLFPARAPLEFVAIDTLGEFLTTRRGHKFLIVITDRF 249
            WRLRL+E+DFE+ YK+G  N+QADALSRL T GE +   D++IPCF+ +  T         +W                                    R+      C                        RT     QV++P +L+  VL LSHYAKL GH GGR+LY TLRR FYWP MA+DCYA  + C  CA+ RVKLR+ + ++KLF  +APLEFVAID LGE +TT+RG+++ + I   F
Sbjct:  231 WRLRLSEFDFEIKYKRGKANSQADALSRLRTAGETVHEIDDEIPCFMSERPTV--------QWR----------------------------------TRKILTRTLC------------------------RTAAEFVQVVIPQSLRDGVLGLSHYAKLAGHPGGRELYKTLRRYFYWPTMALDCYAVAKNCAACARERVKLRRNTKEMKLFTPKAPLEFVAIDILGELITTKRGNRYQLHIAQVF 411          
The following BLAST results are available for this feature:
BLAST of Gchil8254.t3 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QG36_CHOCR1.270e-6649.02Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7Q4V7_CHOCR1.280e-6145.70Integrase catalytic domain-containing protein n=1 ... [more]
R7QL13_CHOCR2.240e-6045.88Integrase catalytic domain-containing protein n=2 ... [more]
R7Q5U0_CHOCR6.770e-5643.75Integrase catalytic domain-containing protein n=1 ... [more]
R7QFB9_CHOCR4.110e-5241.57Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QCX0_CHOCR7.080e-5241.34Integrase catalytic domain-containing protein n=1 ... [more]
R7QNI8_CHOCR6.230e-5041.11Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QLF2_CHOCR1.900e-4740.39Integrase catalytic domain-containing protein n=1 ... [more]
R7QG64_CHOCR9.290e-4739.29Integrase catalytic domain-containing protein n=1 ... [more]
R7QJW9_CHOCR7.490e-4639.68Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041588Integrase zinc-binding domainPFAMPF17921Integrase_H2C2coord: 145..203
e-value: 5.7E-13
score: 48.7
NoneNo IPR availableGENE3D1.10.340.70coord: 121..201
e-value: 1.5E-12
score: 49.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:903867..904720 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8254.t3Gchil8254.t3Gracilaria chilensis NLEC103_M9 malemRNAtig00004384_pilon 903867..904720 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8254.t3 ID=Gchil8254.t3|Name=Gchil8254.t3|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=259bp
MRWRLRLAEYDFEVIYKKGTQNAQADALSRLPTNGEALAVDDEDIPCFVV
DDGTPGNPDWLHDKWNESPESDDDIDALLVSDDSKKPPPGDFVPIPPEEM
VREQQGDPFCTKIRAWLNGVAQLPFEVNDLGYVVRTVQSSPQVMVPHTLQ
SSVLHLSHYAKLGGHAGGRKLYLTLRRNFYWPAMAVDCYATVRFCTECAK
NRVKLRKYSTKLKLFPARAPLEFVAIDTLGEFLTTRRGHKFLIVITDRFS
KLGIGGFW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041588Integrase_H2C2