Gchil7710.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7710.t1
Unique NameGchil7710.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length282
Homology
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BLAST of Gchil7710.t1 vs. uniprot
Match: A0A2V3ITV0_9FLOR (DNA (Cytosine-5)-methyltransferase CMT2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITV0_9FLOR)

HSP 1 Score: 80.5 bits (197), Expect = 6.460e-15
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 0 
Query:  197 APTAKALGNAQ--EYVLDRIFEHGEHEDTRELLYRVRWYGFSPEADTWEPTAHIPRSQLVRYHRRMRLPLPREIDSSIVGL 275
            +P A+A    +  EYV+  I +   HED  +L YRVRW G+ P  D W P  ++PRS +VRYHRR +LPLP  +  ++VGL
Sbjct:   73 SPNAQAREGVEDSEYVIACIVDKAFHEDGPKLQYRVRWCGYPPNVDAWYPIENLPRSHVVRYHRRKKLPLPANLVDALVGL 153
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BLAST of Gchil7710.t1 vs. uniprot
Match: R7QG36_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG36_CHOCR)

HSP 1 Score: 73.2 bits (178), Expect = 7.210e-11
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 0 
Query:  206 AQEYVLDRIFEHGEHEDTRELLYRVRWYGFSPEADTWEPTAHIPRSQLVRYHRRMRLPLPREIDSSIVG 274
            +QEYV+D+I +HG  E+  +L+ +VRWYG++ E  TWEP   IPRS +V Y RR +LPLP +   +  G
Sbjct:  798 SQEYVIDKIVDHGYDEE--KLILKVRWYGYTIEDATWEPIEQIPRSAVVIYFRRKKLPLPTQASHAQPG 864
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BLAST of Gchil7710.t1 vs. uniprot
Match: A0A2V3IQG0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQG0_9FLOR)

HSP 1 Score: 61.2 bits (147), Expect = 8.780e-8
Identity = 27/70 (38.57%), Postives = 46/70 (65.71%), Query Frame = 0 
Query:  207 QEYVLDRIFEHGEHEDTRELLYRVRWYGFSPEADTWEPTAHIPRSQLVRYHRRMRLPLPREIDSSIVGLM 276
            ++YV+ RI   G  ++    L+RVRWYG+  +++TWEPTAH+  S ++ Y RR +L     I++++V L+
Sbjct:  105 EKYVIKRIVALGWDDEDNSPLFRVRWYGYPSDSNTWEPTAHLSLSLVLAYCRRAKLD-EENINATLVSLI 173
The following BLAST results are available for this feature:
BLAST of Gchil7710.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3ITV0_9FLOR6.460e-1545.68DNA (Cytosine-5)-methyltransferase CMT2 n=1 Tax=Gr... [more]
R7QG36_CHOCR7.210e-1147.83Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3IQG0_9FLOR8.780e-838.57Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023780Chromo domainPFAMPF00385Chromocoord: 210..259
e-value: 5.1E-7
score: 29.5
NoneNo IPR availableGENE3D2.40.50.40coord: 204..262
e-value: 1.5E-9
score: 39.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 137..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..136
IPR023779Chromo domain, conserved sitePROSITEPS00598CHROMO_1coord: 228..248
IPR000953Chromo/chromo shadow domainPROSITEPS50013CHROMO_2coord: 209..269
score: 11.272401
IPR016197Chromo-like domain superfamilySUPERFAMILY54160Chromo domain-likecoord: 205..261

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025321_piloncontigtig00025321_pilon:441981..442826 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7710.t1Gchil7710.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00025321_pilon 441981..442826 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7710.t1 ID=Gchil7710.t1|Name=Gchil7710.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=282bp
MARAEEKTPDLPPPTVAYANHGDVPKYRDMPRGTRTPVSTEMEPESRKDV
LEFGPKDLETSARENAPLPLQTEPSGEVPLAVPPISAPIPRWQEEEEASP
SVVVQAPSYTGQRSESDKPGEVHPRMEMRSSKKYASMEPGKQDSSLSEKG
SQGMSTLPLPAERQLVDEQTLSDAETANTETLGSALRHFKPVNRSLAPTA
KALGNAQEYVLDRIFEHGEHEDTRELLYRVRWYGFSPEADTWEPTAHIPR
SQLVRYHRRMRLPLPREIDSSIVGLMGTSHF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023780Chromo_domain
IPR023779Chromodomain_CS
IPR000953Chromo/chromo_shadow_dom
IPR016197Chromo-like_dom_sf