Gchil7551.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7551.t1
Unique NameGchil7551.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length163
Homology
BLAST of Gchil7551.t1 vs. uniprot
Match: A0A2V3J2N1_9FLOR (Transcription initiation factor IIA subunit 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2N1_9FLOR)

HSP 1 Score: 170 bits (431), Expect = 3.360e-52
Identity = 83/104 (79.81%), Postives = 92/104 (88.46%), Query Frame = 0
Query:   58 MAGAFQHYRLSSLGRDLTDTLDELISNDMFDSDYNDMVLEHYEKAIMDALGTQVKTKATIRGAIKHYRNHDDIWTFYLKEIDVKIDGKHVKSDQKTEMMAVSKR 161
            MA AFQHYRLS LG+DL DTL+EL+SN+MFD  + D+VLEHYEKAI +ALGT VKTKA IRGAI HYRNHDDIWTF+LK IDVKIDGKHVKS+ KTEMMAVSKR
Sbjct:    1 MADAFQHYRLSILGQDLMDTLEELVSNEMFDPQHKDLVLEHYEKAITEALGTHVKTKAIIRGAIDHYRNHDDIWTFFLKTIDVKIDGKHVKSNAKTEMMAVSKR 104          
BLAST of Gchil7551.t1 vs. uniprot
Match: A0A1X6PCT7_PORUM (Transcription initiation factor IIA subunit 2 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PCT7_PORUM)

HSP 1 Score: 90.9 bits (224), Expect = 1.170e-20
Identity = 43/100 (43.00%), Postives = 65/100 (65.00%), Query Frame = 0
Query:   62 FQHYRLSSLGRDLTDTLDELISNDMFDSDYNDMVLEHYEKAIMDALGTQVKTKATIRGAIKHYRNHDDIWTFYLKEIDVKIDGKHVKSDQKTEMMAVSKR 161
            FQHYR S +G  L + +DE++  D+ D D  +M+L  ++KAI  AL T VKTKA++RG + HYRN ++IWTFYLK   +K++    + D +  ++A   R
Sbjct:    4 FQHYRYSQVGLALQEVMDEMVEADLLDVDTQNMMLLQFDKAISSALSTCVKTKASLRGDLDHYRNVENIWTFYLKNAVIKLENVEHRVDDRLRIIACDGR 103          
BLAST of Gchil7551.t1 vs. uniprot
Match: A0A5J4YRZ1_PORPP (Transcription initiation factor IIA subunit 2 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YRZ1_PORPP)

HSP 1 Score: 87.0 bits (214), Expect = 3.520e-19
Identity = 39/103 (37.86%), Postives = 67/103 (65.05%), Query Frame = 0
Query:   62 FQHYRLSSLGRDLTDTLDELISNDMFDSDYNDMVLEHYEKAIMDALGTQVKTKATIRGAIKHYRNHDDIWTFYLKEIDVKIDG--KHVKSDQKTEMMAVSKRP 162
            + HYR+S++G  L D LDE+++N M   +  +MV   +++AI  AL TQV+ +AT++G + HYRN D++WTF+L    +K++   + +  D K +++A   RP
Sbjct:    7 YMHYRVSAVGMALDDALDEMVNNAMMTEEQAEMVRSQFDRAISTALATQVRNRATLKGRVNHYRNCDNVWTFFLDSATIKLEAGAEELVIDDKLKIVACDGRP 109          
BLAST of Gchil7551.t1 vs. uniprot
Match: A0A7S0ZDF9_9RHOD (Transcription initiation factor IIA subunit 2 n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZDF9_9RHOD)

HSP 1 Score: 82.8 bits (203), Expect = 1.610e-17
Identity = 38/102 (37.25%), Postives = 68/102 (66.67%), Query Frame = 0
Query:   62 FQHYRLSSLGRDLTDTLDELISNDMFDSDYNDMVLEHYEKAIMDALGTQVKTKATIRGAIKHYRNHDDIWTFYLKEIDVKID--GKHVKSDQKTEMMAVSKR 161
            +QHYR+S++G  L D+L++++ ++    +  +++   ++KAI  AL +QVK KAT++G + HYRN D++WTF+L    +KID  G++   D K +++A   R
Sbjct:    4 YQHYRVSTVGIQLEDSLEDMLDSETLTEEQAEIIRNQFDKAISAALASQVKNKATLKGKLHHYRNCDNVWTFFLDSASIKIDANGENHIVDDKLKIIACDGR 105          
BLAST of Gchil7551.t1 vs. uniprot
Match: A0A7S1TNQ3_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TNQ3_9RHOD)

HSP 1 Score: 79.7 bits (195), Expect = 4.340e-16
Identity = 35/82 (42.68%), Postives = 56/82 (68.29%), Query Frame = 0
Query:   62 FQHYRLSSLGRDLTDTLDELISNDMFDSDYNDMVLEHYEKAIMDALGTQVKTKATIRGAIKHYRNHDDIWTFYLKEIDVKID 143
            +QHYR+S++G  L D+L+E+I ++    +  ++V   ++KAI  AL  QVK KA ++G + HYRN D++WTF+L    +KID
Sbjct:   26 YQHYRVSTVGCQLEDSLEEMIDSETMTEEQAEIVRNQFDKAISLALSAQVKNKANLKGKLHHYRNCDNVWTFFLDSATIKID 107          
BLAST of Gchil7551.t1 vs. uniprot
Match: A0A6A6XYX9_9PEZI (Transcription initiation factor IIA subunit 2 n=2 Tax=Mytilinidiaceae TaxID=281242 RepID=A0A6A6XYX9_9PEZI)

HSP 1 Score: 77.0 bits (188), Expect = 2.550e-15
Identity = 40/102 (39.22%), Postives = 64/102 (62.75%), Query Frame = 0
Query:   62 FQHYRLSSLGRDLTDTLDELISNDMFDSDYNDMVLEHYEKAIMDALGTQVKTKATIRGAIKHYRNHDDIWTFYLKEIDVKIDGKHVKSDQKTEMMAVS-KRP 162
            ++ YR SSLG  LTDTLDE ISN   +      +L H +KA+ D L  +VK + T +G +  YR  D++WTF +K+I +K+D  +  + +K ++++ + KRP
Sbjct:    7 YELYRRSSLGSSLTDTLDEFISNGGIEPQLALKILTHLDKAVADVLAEKVKARMTFKGHLDTYRFCDEVWTFIIKDIALKLDNTNSITAEKIKIVSCNAKRP 108          
BLAST of Gchil7551.t1 vs. uniprot
Match: A0A6A6VW84_9PEZI (Transcription initiation factor IIA subunit 2 n=1 Tax=Pseudovirgaria hyperparasitica TaxID=470096 RepID=A0A6A6VW84_9PEZI)

HSP 1 Score: 76.3 bits (186), Expect = 5.080e-15
Identity = 38/102 (37.25%), Postives = 65/102 (63.73%), Query Frame = 0
Query:   62 FQHYRLSSLGRDLTDTLDELISNDMFDSDYNDMVLEHYEKAIMDALGTQVKTKATIRGAIKHYRNHDDIWTFYLKEIDVKIDGKH-VKSDQKTEMMAVSKRP 162
            ++ YR SS+G  LTDTLD+LIS    +      ++ +++KAI D +  +VKT+ T +G +  YR  DD+WTF +K+I+ K+D  + +++D+   +   SK+P
Sbjct:    8 YELYRRSSVGTTLTDTLDQLISEQRLEPQLAMKIIANFDKAIADVIADKVKTRLTFKGHLDTYRFCDDVWTFIIKDINFKLDNTNPLQADKVRIVSCSSKKP 109          
BLAST of Gchil7551.t1 vs. uniprot
Match: A0A5C3MBH7_9AGAR (Transcription initiation factor IIA subunit 2 n=1 Tax=Crucibulum laeve TaxID=68775 RepID=A0A5C3MBH7_9AGAR)

HSP 1 Score: 74.3 bits (181), Expect = 2.490e-14
Identity = 37/101 (36.63%), Postives = 64/101 (63.37%), Query Frame = 0
Query:   58 MAGAF-QHYRLSSLGRDLTDTLDELISNDMFDSDYNDMVLEHYEKAIMDALGTQVKTKATIRGAIKHYRNHDDIWTFYLKEIDVKIDGKHVKSDQKTEMMA 157
            MA A+ + YR S++G  LTD+LDELI++          VL+ ++K++ D +   VKTK T++G +++YRN DD+WTF+++    K++G       K +++A
Sbjct:    1 MASAYYEFYRGSTIGMALTDSLDELITSGAITPQLAMKVLQQFDKSLADGMFKNVKTKVTLKGHLRNYRNCDDVWTFFVRNPAFKMEGNEQVGAPKIKIIA 101          
BLAST of Gchil7551.t1 vs. uniprot
Match: A0A1Y2G6C7_9FUNG (Transcription initiation factor IIA subunit 2 n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2G6C7_9FUNG)

HSP 1 Score: 74.3 bits (181), Expect = 2.560e-14
Identity = 36/94 (38.30%), Postives = 58/94 (61.70%), Query Frame = 0
Query:   58 MAGAFQHYRLSSLGRDLTDTLDELISNDMFDSDYNDMVLEHYEKAIMDALGTQVKTKATIRGAIKHYRNHDDIWTFYLKEIDVKIDGKHVKSDQ 151
            M+  ++HYR SS+G  L D+LDELI +   +      VL  ++ +I DAL T+V+T+AT +  + +YR+ DD+WTF L     + D + V +D+
Sbjct:    1 MSQYYEHYRKSSIGLSLIDSLDELIQSGHINPQLAMRVLAQFDMSIADALSTRVRTRATFKAHLDNYRSLDDVWTFVLSSPTFRYDNESVTADK 94          
BLAST of Gchil7551.t1 vs. uniprot
Match: A0A0L0SEK5_ALLM3 (Transcription initiation factor IIA subunit 2 n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SEK5_ALLM3)

HSP 1 Score: 74.3 bits (181), Expect = 2.690e-14
Identity = 33/93 (35.48%), Postives = 59/93 (63.44%), Query Frame = 0
Query:   59 AGAFQHYRLSSLGRDLTDTLDELISNDMFDSDYNDMVLEHYEKAIMDALGTQVKTKATIRGAIKHYRNHDDIWTFYLKEIDVKIDGKHVKSDQ 151
            A  + HYR S+LG  L D LDE+I          + +LEH++K + ++L  ++  +A+ RG++  YRN D++WTF+L+++  K++G  V +D+
Sbjct:    9 ASGYMHYRNSTLGTTLMDALDEMIHTAQIQPAVANRLLEHFDKTMCESLA-RISPRASFRGSLSTYRNCDEVWTFFLRDVQFKMEGGTVHADK 100          
The following BLAST results are available for this feature:
BLAST of Gchil7551.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J2N1_9FLOR3.360e-5279.81Transcription initiation factor IIA subunit 2 n=1 ... [more]
A0A1X6PCT7_PORUM1.170e-2043.00Transcription initiation factor IIA subunit 2 n=1 ... [more]
A0A5J4YRZ1_PORPP3.520e-1937.86Transcription initiation factor IIA subunit 2 n=1 ... [more]
A0A7S0ZDF9_9RHOD1.610e-1737.25Transcription initiation factor IIA subunit 2 n=1 ... [more]
A0A7S1TNQ3_9RHOD4.340e-1642.68Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A6A6XYX9_9PEZI2.550e-1539.22Transcription initiation factor IIA subunit 2 n=2 ... [more]
A0A6A6VW84_9PEZI5.080e-1537.25Transcription initiation factor IIA subunit 2 n=1 ... [more]
A0A5C3MBH7_9AGAR2.490e-1436.63Transcription initiation factor IIA subunit 2 n=1 ... [more]
A0A1Y2G6C7_9FUNG2.560e-1438.30Transcription initiation factor IIA subunit 2 n=1 ... [more]
A0A0L0SEK5_ALLM32.690e-1435.48Transcription initiation factor IIA subunit 2 n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015871Transcription initiation factor IIA, gamma subunit, C-terminalPFAMPF02751TFIIA_gamma_Ccoord: 118..150
e-value: 2.0E-7
score: 31.1
IPR009083Transcription factor IIA, alpha-helical domainGENE3D1.10.287.190coord: 61..112
e-value: 3.0E-14
score: 54.6
IPR009088Transcription factor IIA, beta-barrelGENE3D2.30.18.10coord: 113..161
e-value: 3.5E-8
score: 35.5
IPR009088Transcription factor IIA, beta-barrelSUPERFAMILY50784Transcription factor IIA (TFIIA), beta-barrel domaincoord: 110..152
IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalPFAMPF02268TFIIA_gamma_Ncoord: 62..107
e-value: 4.0E-11
score: 42.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..31
NoneNo IPR availablePANTHERPTHR10966:SF0TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2coord: 61..157
NoneNo IPR availableSUPERFAMILY47396Transcription factor IIA (TFIIA), alpha-helical domaincoord: 62..112
IPR003194Transcription initiation factor IIA, gamma subunitPANTHERPTHR10966TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2coord: 61..157

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1871229..1871788 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7551.t1Gchil7551.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000007_pilon 1871229..1871788 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7551.t1 ID=Gchil7551.t1|Name=Gchil7551.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=163bp
MATLSPAIHRSTPTYNSRRRANPFTLPPFHPSDSTNPRKRLCLLVRSVTV
RRQAVFIMAGAFQHYRLSSLGRDLTDTLDELISNDMFDSDYNDMVLEHYE
KAIMDALGTQVKTKATIRGAIKHYRNHDDIWTFYLKEIDVKIDGKHVKSD
QKTEMMAVSKRP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015871TFIIA_gsu_C
IPR009083TFIIA_a-hlx
IPR009088TFIIA_b-brl
IPR015872TFIIA_gsu_N
IPR003194TFIIA_gsu