Gchil7478.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil7478.t1
Unique Name	Gchil7478.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	364

Homology

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BLAST of Gchil7478.t1 vs. uniprot
Match: A0A2V3J277_9FLOR (C2H2-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J277_9FLOR)

HSP 1 Score: 286 bits (732), Expect = 4.270e-91
Identity = 188/373 (50.40%), Postives = 235/373 (63.00%), Query Frame = 0

Query:    1 MSSSPRQLRICTQCGKKFGKQLKLERHLLEAHGATLSIPPPTTPPSPSFLLVETQLESALAEATRCFQLGNPSCRLCVHKKPFKNSRDLAQHLVSKHTQQLMCAESVPLACPPTSSEVSAKPDARHKRPSNVAFSDPHKRVRIEHSLQIDHHPQAKRAKLS--MTVASSLHNHPSVSPQTVPAKPIHATDQAPLP-NPPLNAAVANRAHT-PATVSTKHVPDNGHQPKANNNIASAENXXXXXXXXXXXXXXXXXXSAIKRTKSAPVVNPSAALSSNSSSRSGTPSSGCKPPITPKRSKPVMAPKHSIKNASSPAAAPA-----ANASAAATNPTANFNPLRVVHKQTTM-MDFSTVGVGANTRKSYYTLKNS 363
            M+SSPR L  C++C KKFGK  KLERHLLE+HGATLSIPPPT PPSPSFLLVETQLESALAEA R FQL +P+CRLCV K+PFKNSRDLAQHLVSKH+  LMCAE++PL   P++SEVSA P+ R K  +  A+S+  KR +IE S      P  KRAK +       + +   S +  TVP +P+  +    +P NP   +A+ N     P+T +T H       P     I+++++                      RTKS  + N ++ALSSNSSSRSGTPSSG KPP+TPKR+K V+ PK S+K A+SP    A     A  +AA   P    NPLR V +  ++ +DFS  G GANTRKSYYTLKNS
Sbjct:    1 MASSPRALHTCSKCAKKFGKVTKLERHLLESHGATLSIPPPTDPPSPSFLLVETQLESALAEANRRFQLADPTCRLCVVKRPFKNSRDLAQHLVSKHSDALMCAEALPLPSLPSTSEVSANPNPRDKVRATPAYSN--KRTQIEQSTVESDQPPLKRAKTAPKQRQTPTTYQQSSSANPTVP-RPVSKSLPKDVPGNPKTASALPNDVSPKPSTENTTHTTTKNAPP-----ISASQSKQSKPKHASSPDRSPVN----NRTKSNALANHASALSSNSSSRSGTPSSGTKPPVTPKRTKAVLPPKESMKRAASPNRDKATQNATAKPTAAVPTPVPFLNPLRNVSRVLSIPLDFSAAGFGANTRKSYYTLKNS 361

The following BLAST results are available for this feature:

BLAST of Gchil7478.t1 vs. uniprot

BLAST of Gchil7478.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J277_9FLOR	4.270e-91	50.40	C2H2-type domain-containing protein n=1 Tax=Gracil...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013087	Zinc finger C2H2-type	SMART	SM00355	c2h2final6	coord: 9..32 e-value: 0.17 score: 20.9 coord: 72..97 e-value: 30.0 score: 9.1
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 11..32
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 9..32 score: 9.369337
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 205..237
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..182
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 264..319
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 264..287
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..237

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000007_pilon	contig	tig00000007_pilon:1395082..1396173 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7478.t1	Gchil7478.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00000007_pilon 1395082..1396173 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil7478.t1 ID=Gchil7478.t1|Name=Gchil7478.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=364bp
MSSSPRQLRICTQCGKKFGKQLKLERHLLEAHGATLSIPPPTTPPSPSFL
LVETQLESALAEATRCFQLGNPSCRLCVHKKPFKNSRDLAQHLVSKHTQQ
LMCAESVPLACPPTSSEVSAKPDARHKRPSNVAFSDPHKRVRIEHSLQID
HHPQAKRAKLSMTVASSLHNHPSVSPQTVPAKPIHATDQAPLPNPPLNAA
VANRAHTPATVSTKHVPDNGHQPKANNNIASAENASAGNASAGNASAGNV
SASAIKRTKSAPVVNPSAALSSNSSSRSGTPSSGCKPPITPKRSKPVMAP
KHSIKNASSPAAAPAANASAAATNPTANFNPLRVVHKQTTMMDFSTVGVG
ANTRKSYYTLKNS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013087	Znf_C2H2_type