Gchil7337.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil7337.t1
Unique Name	Gchil7337.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	337

Homology

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BLAST of Gchil7337.t1 vs. uniprot
Match: A0A2V3J5R9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5R9_9FLOR)

HSP 1 Score: 297 bits (761), Expect = 4.660e-96
Identity = 182/349 (52.15%), Postives = 227/349 (65.04%), Query Frame = 0

Query:    1 MASSSADFVLDEGLDEDEDVLVFQSG------QRRSADPVRPTIPEPLQQPSSSADADEKSPAA--EAPTSVIIDGLPISSSRADLDQFLDSAFVANVRLIRLEKDHLLRVRVQFQDSVAAAAALRKDGADFRGSIMSVKVATDERWEAS--SSVQTQRRPQQPQK--IVLPDAEAVQSGFWNAFAAAKSVAEQLEKSARHLGEDLERRLHVSEKVEQTKSAIASLDEQYGVSQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVSGAAGAVAREVDETFRVGDRARNVFNDAINHDTVGSVAKGVVGALEGDTQTTKKRTKPSAERGDDPPTSEQSSSGR-FEVGG 336
            M SS+ADFVLDEGLDEDEDVL FQS       Q +++ P  P+ P P   PS    +  ++     +APT+VIIDGLPIS+SRADLD  LD A + NVRL RLEKD LLRVRVQF+ +  AA AL KDG DFRG+++SVK AT+ERW+AS   S +    P+ P+   + LPDA+AVQSGFW+AFAAAK+VAE+LE+ ARHLG+DLERRLHV+EKVEQTK AI  LD+QY VS+T                              +VSG A  VAREVDE+FRVGDRARN    A+ +D V  VAK  +  L+ +    K +++P  E  + PP S   +SG+ FEVGG
Sbjct:    1 MTSSAADFVLDEGLDEDEDVLAFQSSLHPPPIQEKNSPPQTPSEP-PQSLPSXXXXSXXQNAPLPQDAPTAVIIDGLPISASRADLDALLDGAPITNVRLRRLEKDRLLRVRVQFEHAQTAAKALEKDGTDFRGAVISVKKATEERWQASFLDSPRHTPNPRSPRSPTLSLPDAKAVQSGFWSAFAAAKNVAERLEQGARHLGDDLERRLHVTEKVEQTKRAIDQLDQQYSVSKTVVEMTERGKQAAVQVDKSLGLSDGVNKVSTDVSGVARIVAREVDESFRVGDRARNAVQGAMQNDAVSGVAKRAMATLDRNASPGKSKSQPMTEEPEQPPPSTDDASGQHFEVGG 348

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BLAST of Gchil7337.t1 vs. uniprot
Match: R7QRC8_CHOCR (RRM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRC8_CHOCR)

HSP 1 Score: 164 bits (416), Expect = 2.610e-44
Identity = 113/313 (36.10%), Postives = 162/313 (51.76%), Query Frame = 0

Query:    1 MASSSADFVLDEGLDEDEDVLVFQSGQRRSADPVRPTI--PEPLQQPSSSADADEKSPAAEAP--TSVIIDGLPISSSRADLDQFLDSAF--VANVRLIRLEKDHLLRVRVQFQDSVAAAAALRKDGADFRGS--IMSVKVATDERWEASSSVQ--------TQRRPQQPQKIVLPDAEAVQSGFWNAFAAAKSVAEQLEKSARHLGEDLERRLHVSEKVEQTKSAIASLDEQYGVSQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVSGAAGAVAREVDETFRVGDRARNVFNDAINHDTVGSVAKGVV 297
            MA   +DFVLDEGLD+DED+L F S ++R       T   P+P   P+                 T+VIIDG+P +SSR DLD F  +    + +++L R+E  ++LR R++F    AAA+AL++DG  F  S   +SVK A+ ERW      Q        T   P      +LPD  AV SGFW+AF+AA+   E+LE+ A  LGE LE +LH+SEKV++T+ A+  +D +  VS+                               +V  AA  +A EVDE F + ++AR   N A+ +DTVG   + +V
Sbjct:    1 MAQEFSDFVLDEGLDDDEDILAFHSNRQRGGGGYAETAGTPQPNASPTXXXXXXXXXXXXXXXXXTTVIIDGMPPTSSRPDLDAFFSACGGKILSLQLRRIEASNILRARIKFDSEEAAASALQRDGQVFPRSDLAVSVKPASMERWNDGCGSQRGNGAPGATLTSPTNSIMQMLPDTNAVTSGFWSAFSAARXXXERLEEKATKLGEQLEEKLHLSEKVDETRDALVEVDRKLQVSEKVGKMAVAGKSAAQGIDETYGISKQVGKVAADVGSAARTMASEVDEDFHLSEKARVATNLALQNDTVGPAVRSIV 313

The following BLAST results are available for this feature:

BLAST of Gchil7337.t1 vs. uniprot

BLAST of Gchil7337.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J5R9_9FLOR	4.660e-96	52.15	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
R7QRC8_CHOCR	2.610e-44	36.10	RRM domain-containing protein n=1 Tax=Chondrus cri...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 47..144 e-value: 8.4E-6 score: 27.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 320..336
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 305..319
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 293..336
None	No IPR available	CDD	cd00590	RRM_SF	coord: 64..132 e-value: 9.03552E-4 score: 35.3585
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 52..139

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000007_pilon	contig	tig00000007_pilon:523177..524187 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7337.t1	Gchil7337.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00000007_pilon 523177..524187 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil7337.t1 ID=Gchil7337.t1|Name=Gchil7337.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=337bp
MASSSADFVLDEGLDEDEDVLVFQSGQRRSADPVRPTIPEPLQQPSSSAD
ADEKSPAAEAPTSVIIDGLPISSSRADLDQFLDSAFVANVRLIRLEKDHL
LRVRVQFQDSVAAAAALRKDGADFRGSIMSVKVATDERWEASSSVQTQRR
PQQPQKIVLPDAEAVQSGFWNAFAAAKSVAEQLEKSARHLGEDLERRLHV
SEKVEQTKSAIASLDEQYGVSQTVSEAARKSKEAAVGVDKTYGISNGVNK
VASNVSGAAGAVAREVDETFRVGDRARNVFNDAINHDTVGSVAKGVVGAL
EGDTQTTKKRTKPSAERGDDPPTSEQSSSGRFEVGG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf