Gchil7336.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7336.t1
Unique NameGchil7336.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length154
Homology
BLAST of Gchil7336.t1 vs. uniprot
Match: A0A2V3J6V1_9FLOR (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6V1_9FLOR)

HSP 1 Score: 145 bits (367), Expect = 2.490e-42
Identity = 70/88 (79.55%), Postives = 79/88 (89.77%), Query Frame = 0
Query:    1 MLPLSLLKSATGCPILIELKNGETYNAKLRNMDLWMNLTLEDAIRTSSDGLSFWRLPTVLIRGNTVKYIRVPELVLSILDEERAARQQ 88
            MLPLSLLKSATGCPILIELKNGETYNAKL +MDLWMN++L DA+RTS DG  FW +P + IRGNT+KYIRVPELVL I++EERAARQQ
Sbjct:    1 MLPLSLLKSATGCPILIELKNGETYNAKLHSMDLWMNMSLTDAVRTSRDGNDFWHVPQLYIRGNTIKYIRVPELVLGIVEEERAARQQ 88          
BLAST of Gchil7336.t1 vs. uniprot
Match: R7QMG7_CHOCR (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMG7_CHOCR)

HSP 1 Score: 115 bits (287), Expect = 3.790e-30
Identity = 54/86 (62.79%), Postives = 67/86 (77.91%), Query Frame = 0
Query:    1 MLPLSLLKSATGCPILIELKNGETYNAKLRNMDLWMNLTLEDAIRTSSDGLSFWRLPTVLIRGNTVKYIRVPELVLSILDEERAAR 86
            MLPLSLLKS+TG PIL+ELKNG+TYN  L N+D WMN+ L D IRTS DG  FW +P + IRGNT+KY+RVP+ VL  + +E+ AR
Sbjct:    1 MLPLSLLKSSTGYPILVELKNGDTYNGHLSNIDQWMNVNLNDVIRTSKDGDHFWSVPEMYIRGNTIKYLRVPDAVLDAVADEKHAR 86          
BLAST of Gchil7336.t1 vs. uniprot
Match: R7QHR4_CHOCR (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHR4_CHOCR)

HSP 1 Score: 115 bits (287), Expect = 1.780e-29
Identity = 54/86 (62.79%), Postives = 67/86 (77.91%), Query Frame = 0
Query:    1 MLPLSLLKSATGCPILIELKNGETYNAKLRNMDLWMNLTLEDAIRTSSDGLSFWRLPTVLIRGNTVKYIRVPELVLSILDEERAAR 86
            MLPLSLLKS+TG PIL+ELKNG+TYN  L N+D WMN+ L D IRTS DG  FW +P + IRGNT+KY+RVP+ VL  + +E+ AR
Sbjct:   77 MLPLSLLKSSTGYPILVELKNGDTYNGHLSNIDQWMNVNLNDVIRTSKDGDHFWSVPEMYIRGNTIKYLRVPDAVLDAVADEKHAR 162          
BLAST of Gchil7336.t1 vs. uniprot
Match: A0A068RWB1_9FUNG (U6 snRNA-associated Sm-like protein LSm4 n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RWB1_9FUNG)

HSP 1 Score: 108 bits (271), Expect = 7.700e-28
Identity = 55/100 (55.00%), Postives = 69/100 (69.00%), Query Frame = 0
Query:    1 MLPLSLLKSATGCPILIELKNGETYNAKLRNMDLWMNLTLEDAIRTSSDGLSFWRLPTVLIRGNTVKYIRVPELVLSILDEERAARQQAHQRSRTRRSGG 100
            MLPLSLL +A G P+L+ELKNGET+N  L N D WMNLTL + I+TS DG  FWRLP   IRGNT+KY+ VPE ++ ++ EE    +Q + R    R GG
Sbjct:    1 MLPLSLLHTAAGHPLLVELKNGETFNGHLVNCDNWMNLTLREVIQTSPDGDKFWRLPECYIRGNTIKYLNVPEEIVDMVKEEEG--RQRNMRGNRGRGGG 98          
BLAST of Gchil7336.t1 vs. uniprot
Match: W7TE23_9STRA (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TE23_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.940e-27
Identity = 49/90 (54.44%), Postives = 69/90 (76.67%), Query Frame = 0
Query:    1 MLPLSLLKSATGCPILIELKNGETYNAKLRNMDLWMNLTLEDAIRTSSDGLSFWRLPTVLIRGNTVKYIRVPELVLSILDEERAARQQAH 90
            MLPLSLLK+A G P+L+ELKNG+TYN +L + D WMN+TL D I TS DG  FW++P   +RGN++KY+RVPE V+ +++EE   R++ +
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERERTY 90          
BLAST of Gchil7336.t1 vs. uniprot
Match: A0A7I8IZY5_SPIIN (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8IZY5_SPIIN)

HSP 1 Score: 108 bits (270), Expect = 1.980e-27
Identity = 57/106 (53.77%), Postives = 72/106 (67.92%), Query Frame = 0
Query:    1 MLPLSLLKSATGCPILIELKNGETYNAKLRNMDLWMNLTLEDAIRTSSDGLSFWRLPTVLIRGNTVKYIRVPELVLSILDEERAARQQAHQRSRTRR--SGGSRSK 104
            MLPLSLLK+A G P+L+ELKNGETYN  L N D WMN+ L + I TS DG  FWR+P   IRGNT+KY+RVP+ V+  + EE +  + A  R R R   +GG  +K
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETSKSRSARGRGRGREEATGGRPAK 106          
BLAST of Gchil7336.t1 vs. uniprot
Match: A0A8H7SAW3_9FUNG (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7SAW3_9FUNG)

HSP 1 Score: 108 bits (269), Expect = 2.060e-27
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = 0
Query:    1 MLPLSLLKSATGCPILIELKNGETYNAKLRNMDLWMNLTLEDAIRTSSDGLSFWRLPTVLIRGNTVKYIRVPELVLSILDEERAARQQAHQ 91
            MLPLSLL +A G P+L+ELKNGET+N  L N D WMNLTL + I+TS DG  FWRLP   IRGNT+KY+ VPE ++ ++ EE    +QA +
Sbjct:    1 MLPLSLLHTAAGHPLLVELKNGETFNGHLVNCDNWMNLTLREVIQTSPDGDRFWRLPECYIRGNTIKYLNVPEEIVDMVKEEEIKARQARR 91          
BLAST of Gchil7336.t1 vs. uniprot
Match: A0A1X6P2E3_PORUM (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P2E3_PORUM)

HSP 1 Score: 110 bits (274), Expect = 2.540e-27
Identity = 51/84 (60.71%), Postives = 68/84 (80.95%), Query Frame = 0
Query:    1 MLPLSLLKSATGCPILIELKNGETYNAKLRNMDLWMNLTLEDAIRTSSDGLSFWRLPTVLIRGNTVKYIRVPELVLSILDEERA 84
            MLPL+LL+S+TG P+L+ELKNG+TY+  L ++D WMNL L DA+RTS++G SFW +P V IRGNTVKY+R PE ++ I+ EE A
Sbjct:    1 MLPLTLLRSSTGHPVLVELKNGDTYSGVLVSIDSWMNLNLADAVRTSAEGDSFWSVPKVYIRGNTVKYVRAPEEIVDIVAEEAA 84          
BLAST of Gchil7336.t1 vs. uniprot
Match: A0A7S2UV99_9STRA (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV99_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.610e-27
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 0
Query:    1 MLPLSLLKSATGCPILIELKNGETYNAKLRNMDLWMNLTLEDAIRTSSDGLSFWRLPTVLIRGNTVKYIRVPELVLSILDEERAARQQAHQRSRTRRSGGSRSK 104
            MLPLSLLK+A G P+L+ELKNG+TYN +L + D WMN+ L + I TS DG  FWRLP   IRGN++KY+R+P+ V+ +++EE     Q   R  TR  GG  SK
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDSWMNINLREVICTSRDGDRFWRLPECYIRGNSIKYLRIPDEVIDMVNEEAM---QKEVRMATRGRGGRGSK 101          
BLAST of Gchil7336.t1 vs. uniprot
Match: A0A397T5Z1_9GLOM (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397T5Z1_9GLOM)

HSP 1 Score: 107 bits (267), Expect = 2.680e-27
Identity = 54/104 (51.92%), Postives = 73/104 (70.19%), Query Frame = 0
Query:    1 MLPLSLLKSATGCPILIELKNGETYNAKLRNMDLWMNLTLEDAIRTSSDGLSFWRLPTVLIRGNTVKYIRVPELVLSILDEERAARQQAHQRSRTRRSGGSRSK 104
            MLPLSLL +A G P+L+ELKNGET+N  L N D WMNLTL + I+TS +G  FWRLP   IRGNT+KY+RVP+ ++ ++ E+   ++QA        SGG+R +
Sbjct:    1 MLPLSLLNTAQGHPMLVELKNGETFNGHLVNCDNWMNLTLREVIQTSPEGDRFWRLPECYIRGNTIKYLRVPDEIMEMVKEDSIRQRQAA-------SGGNRGR 97          
The following BLAST results are available for this feature:
BLAST of Gchil7336.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6V1_9FLOR2.490e-4279.55U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=G... [more]
R7QMG7_CHOCR3.790e-3062.79U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=C... [more]
R7QHR4_CHOCR1.780e-2962.79U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=C... [more]
A0A068RWB1_9FUNG7.700e-2855.00U6 snRNA-associated Sm-like protein LSm4 n=2 Tax=L... [more]
W7TE23_9STRA1.940e-2754.44U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=N... [more]
A0A7I8IZY5_SPIIN1.980e-2753.77U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=S... [more]
A0A8H7SAW3_9FUNG2.060e-2757.14U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=M... [more]
A0A1X6P2E3_PORUM2.540e-2760.71U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=P... [more]
A0A7S2UV99_9STRA2.610e-2752.88U6 snRNA-associated Sm-like protein LSm4 (Fragment... [more]
A0A397T5Z1_9GLOM2.680e-2751.92U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=G... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..71
e-value: 8.2E-16
score: 68.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 6..70
e-value: 7.0E-14
score: 51.3
NoneNo IPR availableGENE3D2.30.30.100coord: 1..73
e-value: 4.0E-24
score: 86.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..153
NoneNo IPR availablePANTHERPTHR23338:SF16U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM4coord: 1..125
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..125
IPR034101Sm-like protein Lsm4CDDcd01723LSm4coord: 2..77
e-value: 2.57109E-37
score: 120.758
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 3..129

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:434070..434531 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7336.t1Gchil7336.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000007_pilon 434070..434531 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7336.t1 ID=Gchil7336.t1|Name=Gchil7336.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=154bp
MLPLSLLKSATGCPILIELKNGETYNAKLRNMDLWMNLTLEDAIRTSSDG
LSFWRLPTVLIRGNTVKYIRVPELVLSILDEERAARQQAHQRSRTRRSGG
SRSKSSGARKGASGGASGGAGGRGGGAGAGGDGTGGGRTGGSSGRRKEPQ
WLR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027141LSm4/Sm_D1/D3
IPR034101Lsm4
IPR010920LSM_dom_sf