Gchil7311.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7311.t1
Unique NameGchil7311.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length1089
Homology
BLAST of Gchil7311.t1 vs. uniprot
Match: A0A2V3J6L3_9FLOR (RRM domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6L3_9FLOR)

HSP 1 Score: 1293 bits (3346), Expect = 0.000e+0
Identity = 769/1096 (70.16%), Postives = 855/1096 (78.01%), Query Frame = 0
Query:    1 MVNEHAERDPEWSHDRLRDPRPGKKPRLSAVPDDRRDQTSLTPXXXXXXXXXXXXXXXXXRILLANLDYNTTEQDIEDFFRVSGVDVKHVSLVKVSPGNRVNGNAYVYVLDLRSVDVALDLDGAEFRGRKLRVSTMPEDQRTVCVRGMPRPSDEKDVRELFRGCNIVEARSRPVKGGPPDMNTWFVDFADEQSFRRALDKDRSLPGLTICIATAQGRGTPRTRDYRDNGMPPPPLPSDGDRRIAGRDDRLRXXXXXXXXXXXXXXRERERDXXXXXXXXXXXXXXXXXXGREERVVDPXXXXXXXXXXXXXXXXXXXXXXYDRRVRNDSPRRYDRRADGDRNGDVGNGFSRSAATGGRGHSRSRSPPARYERERRYDRYEHDRRDRRGGAGYDDLYDRHRDRRYSPDYXXXXXXXXXXDRRDRDRYRXXXXXXXERGYGRXXXXXXER-RDSRSGRYDREPVEPRYDRERKVDPPLDPTVTTVLTNLPFCEDRERVVDTLARTLEDLNDALRIKEIMPVGRRCGACVVVFRDEDSYSKALAMNSITISTRKVNILPLEVPSVARVQKLQPGFIPEDIIDDMRRNYGVESLYIKLKQSDQLLLGIEDSRFLIRLLDIDGRPLLHSRYATVSYIPSRNHSNDMGGRSRRSPHDEFGGPGXXXXXXXXXXXXXXXXESRDDEDGAPDRRRFDXXXXXXXXXXXXXXXXXTDRDARGHNGKS-EWRVQFVGPHDRIEESLVKNALTHVGLTDLVVIPIDDCTVEVHGGQSGEKTMKQVLDLPNAILPSALNLRGLSARLSSSSASKK-RPSPTP----PSSGDV--DGPSAKKMKRCDDNAGSGKVPNSLQAALTDRFYVSPMTPPPGETATLKGNKGAPDPELPRICERLETLRSAITGRDSKASDGQNYADFCSNLESLCVPQVLKYTTRENTDPLPPIVWTGTLSKGTKAACNGYLVLRATQGEEYVKKTVAAFPTDVKVEFRGRFDDDAFDHLLTSEAVVVVVKAKDEESSGMDSTPTDKRAPRSREYLKGILQSLRNKQRLGIGRYMWEGQKYLTLCIPPNPFVFKKLRLPWRYQDFAGHDSLLLVVGPKSASQK 1087
            MVNEHAERDPEWSHDR+RDPRPGKKPRL+   DDRRD  SLTP                 RILLANLDYNTTE DIEDFFR +GVDV+ VSLVKVSPGNRVNGNAYVYV+D RSV +ALDLDGAEFRGRKLRVSTMPEDQRTVCVRGMPRPS EKDVRELFRGCNI++ARSRPVKGGPPDMNTWFVDF DE SFRRALDKDRSLPGLTICIATAQGRGTPR RD+RDNG PPPP  +D DRR+  RDDR R   XXXXXXXXXXX         XXXXXXX XXX    GRE     P  XXXXXXXXXXXXXXXXXXXX       +SPRR+DRRA+GDRNGDVGNG+SR     GR HSRS SPP+RY+R+RR DRY+++RRDRRG   YD+ YDRHRDRRYSP+Y          +RRDRDRYRXXXXXXX      XXXXXX   RD R GRYDREPV+     +RK D PLDP+VTTVLTNLPFCEDRERVVDTLA TLE LNDAL+IK+I+PVGRRCGACVV+FRDE+SYS+ALAMNSITIS RKVNILPLEVPSVARVQKLQPGF PEDIIDDMRR+YGVE+LYIKL+QSDQLLLGI+DSRFL+RLLDIDGRPL+HSRYATVSYIPSRNH+ND+  RSRRSP ++F GPG   XXXXXXXX         DE+GAPDRRR D                 TDRDAR ++ K  EW+VQF GP + ++E L+K+AL +VG+  L V  +DD TVEVHGG +GE T  +VLD+PN  LPS L+ +GL AR +    S    P P P    P + D   +  S KKMK  DDN   GKVP SLQ ALTDRF+VSPMTP PG+    KG +  P+PELP+ICERLETLRSAITGR SK SDG NY++FC NL SLC PQVLKYTT ENTDPLPPIVW GTLSKG KA C G+LVLR++Q +E  K  V A P+DVKVE RG+F+D AFDHLLT EAVVVVVKA++E + G D++  D R P +REY KGILQSLRNKQRLGIGRYMWEG+KYL+LCIPPNP VFKKLRLPWRYQDFAGHDSLLLVVGPK+A QK
Sbjct:    1 MVNEHAERDPEWSHDRMRDPRPGKKPRLT---DDRRDDPSLTPTRPPDPSIP--------RILLANLDYNTTEHDIEDFFRDAGVDVREVSLVKVSPGNRVNGNAYVYVIDHRSVHIALDLDGAEFRGRKLRVSTMPEDQRTVCVRGMPRPSSEKDVRELFRGCNIIDARSRPVKGGPPDMNTWFVDFGDEDSFRRALDKDRSLPGLTICIATAQGRGTPRNRDFRDNGPPPPP--NDMDRRLPLRDDRPRDDRXXXXXXXXXXXXXDRPPRDDXXXXXXXHXXXRLPDGRESLDRHPDRXXXXXXXXXXXXXXXXXXXXXX-----ESPRRHDRRAEGDRNGDVGNGYSR-----GRAHSRSMSPPSRYDRDRRNDRYDYERRDRRG---YDEPYDRHRDRRYSPEYYRDREYDRDYERRDRDRYRXXXXXXXXXXXXXXXXXXXXXXRDPRGGRYDREPVDXXXXXDRKGDRPLDPSVTTVLTNLPFCEDRERVVDTLAGTLEQLNDALKIKDIIPVGRRCGACVVIFRDEESYSRALAMNSITISGRKVNILPLEVPSVARVQKLQPGFAPEDIIDDMRRSYGVETLYIKLRQSDQLLLGIDDSRFLVRLLDIDGRPLMHSRYATVSYIPSRNHANDVA-RSRRSPPNDFNGPGGRGXXXXXXXXRDRDGR---DEEGAPDRRRSDGGDRRDNGSDHARRD--TDRDARNYSSKQPEWKVQFFGPQNHVKEGLIKDALAYVGVHGLAVRSLDDYTVEVHGGNTGEGTFHKVLDIPNVRLPSPLSFKGLIARPARPPRSHSLHPDPKPQKKRPFTSDTGAEESSPKKMKHADDNR-HGKVPTSLQTALTDRFHVSPMTPSPGDATLSKGKRSPPNPELPQICERLETLRSAITGRGSKDSDGLNYSEFCGNLRSLCEPQVLKYTTMENTDPLPPIVWNGTLSKGNKAKCRGFLVLRSSQKDEQFKPVVEAIPSDVKVELRGKFEDGAFDHLLTPEAVVVVVKAEEEGARGTDASVADGRTPNNREYFKGILQSLRNKQRLGIGRYMWEGKKYLSLCIPPNPCVFKKLRLPWRYQDFAGHDSLLLVVGPKAAPQK 1063          
BLAST of Gchil7311.t1 vs. uniprot
Match: R7QLC4_CHOCR (RRM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLC4_CHOCR)

HSP 1 Score: 673 bits (1737), Expect = 1.330e-221
Identity = 519/1125 (46.13%), Postives = 648/1125 (57.60%), Query Frame = 0
Query:   21 RPGKKPRLSAV-PDDRRDQTSLTPXXXXXXXXXXXXXXXXXRILLANLDYNTTEQDIEDFFRVSGVDVKHVSLVKVSPGNRVNGNAYVYVLDLRSVDVALDLDGAEFRGRKLRVSTMPEDQRTVCVRGMPRPSDEKDVRELFRGCNIVEARSRPVKGGPPDMNTWFVDFADEQSFRRALDKDRSLPGLTICIATAQGRGTPRTRDYRDNGMPPPPLPSDGDRRIAG-RDDRLRXXXXXXXXXXXXXXRERERDXXXXXXXXXXXXXXXXXXGREERVVDPXXXXXXXXXXXXXXXXXXXXXXYDRRVRNDSPRRYDRRADGDRNGDVGNGFSRSAATGGRGHSRSRSPPARYERERR-------YDRYEHDRRDRRGGAGYDDLYD---RHRDRRYSPDYXXXXXXXXXXDRRDRDRYRXXXXXXXERGYGRXXXXXXERR------------------DSRSGRYDREPVEPRY---DRERKVDPPLDPTVTTVLTNLPFCEDRERVVDTLARTLEDLNDALRIKEIMPVGRRCGACVVVFRDEDSYSKALAMNSITISTRKVNILPLEVPSVARVQKLQPGFIPEDIIDDMRRNYGVESLYIKLKQSDQLLLGIEDSRFLIRLLDIDGRPLLHSRYATVSYIPSRNHSNDMGGRSR--RSPHDEFGGPGXXXXXXXXXXXXXXXXESRDDEDGAPDRRR--------FDXXXXXXXXXXXXXXXXXTDRDARGHNGKSEWRVQFVGPHDRIEESLVKNALTHVGLTDLVVIPIDDCTVEVHGGQSGEKTMKQVLDLPNAILPSALNLRGLSARLSSSSASKKRPSPTPPSSG--DVDGPSAKKMK-------RCDDNAGSGKVPNSLQAALTDRFYVSPMTPPPGE-TATLKGNKGAPDPELPRICERLETLRSAITGRDSKASDGQNYADFCSNLESLCVPQVLKYTTRENTDPLPPIVWTGTLSKGTKAACNGYLVLRATQGEEYVKKTVAAFPTDVKVEFRGRFDDDAFDHLLTSEAVVVVVKAKDEESSGMDSTPTDKRA-------PRSREYLKGILQSLRNKQRLGIGRYMWEGQ--KYLTLCIPPNPFVFKKLRLPWRYQDFAGHDSLLLVVGPKS 1083
            RPGKKPRLS   P  +    + TP                 R+LLANL YNTTE+ + D FR +G +V  V LVKV P NRVNGNA+V+++D RSVD+AL LDG EF GR LRVS MPEDQRT CVRG+   S   DV +LFRGC+IV  RSRPVKGGPPD+NTWFVDF DE+SF RAL KDR+ PGL ICIATAQGRG              P LP +   RI G RDD  R   XXXXXXXX    +R  D XXXXXXXXXXXX           VDP                         R R   P+        +RNG +GNG         R  SRSRSP   Y+R+R         D  + D  DR   A YD  Y      RDRR SP         XXX  RDRD   XXXXXXX      XXXXXX                     DSR GRYDR+  E       R+R+ D  LDP VT VLTNLPFCE+R++V+DTL RTLEDL DAL+I++I+PVGRRCGACVVVFR+  S ++A+ + SI+I+ RKVNILPLEVPS+ARVQKL  GF  EDI+DD++R+YGV +L+++ KQSDQLLLG+EDSRFL+RLLDIDGR L++SRYATVSYIPSR+HS+ MGGR R  R  +D+  G G                ESRDD  G+P   R          XXXXXXXXXXXXXXXXX          ++ W V+        ++  + NA  + G+T L     D  +  +  G +    M +V+ L N         +  S++ +  S   KR      S G   +     KK+K       +  +  GS      +Q        +SPMTP PG+ T  LK  +   DP LP   +RLE +RS I  R  +    +NY  FC +L +L  PQ L +T     DP+PP VW+G++ KG  + C+G+LVL + Q EE V+KT++  P D+K+E RG+++D+AF HLL  E+VVV++KA  E+         DKRA       PRS++ L GIL+SLR KQ++GI RY   GQ  KY+ LCIPPNP++F+KLR+PWR +D+AGHDSLLL+VGPK+
Sbjct:   76 RPGKKPRLSLERPGAQGSPGAFTPSGSGRGGGSPTPLPSSSRLLLANLSYNTTEEQLVDLFRDAGAEVDKVRLVKVPPDNRVNGNAFVWLMDSRSVDIALGLDGREFLGRTLRVSDMPEDQRTACVRGLRPRSTSDDVHDLFRGCSIVGVRSRPVKGGPPDVNTWFVDFGDEESFTRALAKDRTAPGLMICIATAQGRG--------------PRLPRE---RIPGPRDDYDRGGPXXXXXXXXRGEYDRRDDRXXXXXXXXXXXXGPYDRAPPVLDVDP-------------------------RERMPPPK--------ERNG-MGNGGPPP-----RSKSRSRSPRGGYDRDRGGSSRDRIRDPMDRDY-DRSRRADYDRGYPPRGHERDRRISPPRDDRYRERXXXXGRDRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDSRGGRYDRDIREASRHAEQRDRRGDQGLDPAVTAVLTNLPFCENRQQVIDTLGRTLEDLPDALKIQDIIPVGRRCGACVVVFRESGSQNRAVQLQSISINGRKVNILPLEVPSIARVQKLSHGFSVEDILDDIQRHYGVRTLFVRTKQSDQLLLGVEDSRFLVRLLDIDGRRLVNSRYATVSYIPSRHHSDGMGGRGRPSRDAYDDPNGRGGGYRDR----------ESRDDR-GSPGNERKRGGDPGPXXXXXXXXXXXXXXXXXXXXXXXXXXXPDEAGWEVRLAELPPAADDRELLNAFENAGVTGLSFDRHDPRSGLLRCGSARLSDMDKVIGLVNR--KEGFLFKNSSSKATVISRGGKRSHAEYESDGIEKLGHSPPKKLKTSSEVEWKAQEEMGSLPPGQGIQ--------ISPMTPSPGDYTLPLKTKREPLDPSLPDTVKRLEKVRSNILERPPEDDSSENYESFCRSLHALREPQKLIHTMSNTIDPIPPQVWSGSVRKGPTSRCDGFLVLNSNQSEEAVRKTISELPKDIKIEHRGKWEDEAFAHLLKPESVVVILKAAKEDGK------VDKRAEKSGSAIPRSKDVLNGILRSLRGKQKMGISRYTLPGQSKKYVALCIPPNPYMFEKLRVPWRARDYAGHDSLLLIVGPKN 1116          
The following BLAST results are available for this feature:
BLAST of Gchil7311.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J6L3_9FLOR0.000e+070.16RRM domain-containing protein n=1 Tax=Gracilariops... [more]
R7QLC4_CHOCR1.330e-22146.13RRM domain-containing protein n=1 Tax=Chondrus cri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 142..213
e-value: 0.31
score: 11.1
coord: 61..134
e-value: 2.9E-7
score: 40.2
coord: 480..554
e-value: 5.2
score: 0.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 63..132
e-value: 2.4E-7
score: 30.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 60..138
score: 11.639343
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 3..136
e-value: 2.9E-11
score: 45.5
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 137..215
e-value: 5.7E-8
score: 34.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 364..385
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 791..835
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 669..719
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 213..385
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 791..806
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 445..470
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 240..342
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 636..719
NoneNo IPR availablePANTHERPTHR23236EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4Hcoord: 47..134
NoneNo IPR availableCDDcd00590RRM_SFcoord: 143..200
e-value: 3.53651E-5
score: 41.1365
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 476..665
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 56..200

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:67474..70740 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7311.t1Gchil7311.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000007_pilon 67474..70740 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7311.t1 ID=Gchil7311.t1|Name=Gchil7311.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=1089bp
MVNEHAERDPEWSHDRLRDPRPGKKPRLSAVPDDRRDQTSLTPPPPPRGA
PDASPPPPPPRILLANLDYNTTEQDIEDFFRVSGVDVKHVSLVKVSPGNR
VNGNAYVYVLDLRSVDVALDLDGAEFRGRKLRVSTMPEDQRTVCVRGMPR
PSDEKDVRELFRGCNIVEARSRPVKGGPPDMNTWFVDFADEQSFRRALDK
DRSLPGLTICIATAQGRGTPRTRDYRDNGMPPPPLPSDGDRRIAGRDDRL
RDERFRDEPPRDERPRERERDRDREERPHREERPSRDERGREERVVDPRD
STDRHAERSRDDLDRHGREEYDRRVRNDSPRRYDRRADGDRNGDVGNGFS
RSAATGGRGHSRSRSPPARYERERRYDRYEHDRRDRRGGAGYDDLYDRHR
DRRYSPDYYRDREYDRDYDRRDRDRYRRDYDGRYERGYGREREYGRERRD
SRSGRYDREPVEPRYDRERKVDPPLDPTVTTVLTNLPFCEDRERVVDTLA
RTLEDLNDALRIKEIMPVGRRCGACVVVFRDEDSYSKALAMNSITISTRK
VNILPLEVPSVARVQKLQPGFIPEDIIDDMRRNYGVESLYIKLKQSDQLL
LGIEDSRFLIRLLDIDGRPLLHSRYATVSYIPSRNHSNDMGGRSRRSPHD
EFGGPGGRGGGGGGGGGGGRDRESRDDEDGAPDRRRFDGGDHDRRESGGD
HGRRETDRDARGHNGKSEWRVQFVGPHDRIEESLVKNALTHVGLTDLVVI
PIDDCTVEVHGGQSGEKTMKQVLDLPNAILPSALNLRGLSARLSSSSASK
KRPSPTPPSSGDVDGPSAKKMKRCDDNAGSGKVPNSLQAALTDRFYVSPM
TPPPGETATLKGNKGAPDPELPRICERLETLRSAITGRDSKASDGQNYAD
FCSNLESLCVPQVLKYTTRENTDPLPPIVWTGTLSKGTKAACNGYLVLRA
TQGEEYVKKTVAAFPTDVKVEFRGRFDDDAFDHLLTSEAVVVVVKAKDEE
SSGMDSTPTDKRAPRSREYLKGILQSLRNKQRLGIGRYMWEGQKYLTLCI
PPNPFVFKKLRLPWRYQDFAGHDSLLLVVGPKSASQKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf