Gchil7293.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7293.t1
Unique NameGchil7293.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length361
Homology
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BLAST of Gchil7293.t1 vs. uniprot
Match: A0A2V3J3J9_9FLOR (THO complex subunit 6-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3J9_9FLOR)

HSP 1 Score: 457 bits (1177), Expect = 1.430e-158
Identity = 225/360 (62.50%), Postives = 278/360 (77.22%), Query Frame = 0 
Query:    1 MAFFDTSAYKRYLRRRISDSTTLVFALAFDPSGSFLAAGTTNGLLKIFSLSSIALYYYTAPLTPQECTVQDLSKHGSINGIEITCTHLYVATDSGLLCFDWKRLINPKHGNYSNGKTVPIVLLGGVQINAVITLGEQSKATSVLAATGEGAFVKVIDGGKKLEQIGENIGKVAYPHCVAGNTNPDVFLAGCNDRMIRHFDIRVSKPLKHVYSLEYKTPPQENAYISSLALHGDSNFVMIADSDKNLTSFHIPSASIVSSTKIPFCPQAIVFSDGYFYCGGSDITNTGLSHVDSCIQRCDVSFQTFETLASSTSSVYAMAVSSAGAIAAGGHSLLKSNDEELAERADVYLCPPVRSFSVFI 360
            MA FD  AYK +LR+R++DSTTLVFAL+FD SGSFL AGT NGLLKIFSLS+IAL  Y +P     C V+DLS+HGSING+ +T   LYVATD+GLLCF WK LI P  G+  N   VP V+L G QINAVI LG++ + +SV+AATG GAF+ V DGGKK  QIG++IG+ AYPHC+ G+ + ++FLAGCND MIR FD+R+ KP+ HVYS+E +   +   YISSLAL+ DS F MIADS+ N+TSFH+P++S VSS + PF PQAIVF+DGYFYCGGSDI N   S    C++RCDV  +    ++SSTSS+YA+A S  GAIAAGGHSL K+ND+ELAERADVYLCPP+RSFSVF+
Sbjct:    1 MALFDIEAYKSHLRKRVADSTTLVFALSFDTSGSFLVAGTINGLLKIFSLSAIALSCYVSPSQSHLCAVRDLSRHGSINGLAVTEQELYVATDNGLLCFSWKHLIAPISGDQPNVHVVPNVILAGTQINAVIKLGQKKRTSSVVAATGTGAFMIVSDGGKKFHQIGDSIGEAAYPHCITGDADSNIFLAGCNDYMIRQFDVRLPKPIVHVYSVEQQRRGRFKPYISSLALNSDSTFAMIADSNHNITSFHLPTSSTVSSLRAPFSPQAIVFADGYFYCGGSDINNGDKSPDSRCLRRCDVRCEDLHVVSSSTSSIYALAASPVGAIAAGGHSLQKTNDQELAERADVYLCPPIRSFSVFV 360
The following BLAST results are available for this feature:
BLAST of Gchil7293.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J3J9_9FLOR1.430e-15862.50THO complex subunit 6-like n=1 Tax=Gracilariopsis ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 206..250
e-value: 45.0
score: 6.5
coord: 10..49
e-value: 0.18
score: 20.9
coord: 161..200
e-value: 29.0
score: 7.8
IPR001680WD40 repeatPFAMPF00400WD40coord: 24..48
e-value: 0.092
score: 13.7
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 5..327
e-value: 1.2E-14
score: 56.0
IPR042626THO complex subunit 6PANTHERPTHR44411THO COMPLEX SUBUNIT 6 HOMOLOGcoord: 7..332
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 38..360
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..37
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 21..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 30..37
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..20
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 19..330

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:975005..976154 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7293.t1Gchil7293.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004441_pilon 975005..976154 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7293.t1 ID=Gchil7293.t1|Name=Gchil7293.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=361bp
MAFFDTSAYKRYLRRRISDSTTLVFALAFDPSGSFLAAGTTNGLLKIFSL
SSIALYYYTAPLTPQECTVQDLSKHGSINGIEITCTHLYVATDSGLLCFD
WKRLINPKHGNYSNGKTVPIVLLGGVQINAVITLGEQSKATSVLAATGEG
AFVKVIDGGKKLEQIGENIGKVAYPHCVAGNTNPDVFLAGCNDRMIRHFD
IRVSKPLKHVYSLEYKTPPQENAYISSLALHGDSNFVMIADSDKNLTSFH
IPSASIVSSTKIPFCPQAIVFSDGYFYCGGSDITNTGLSHVDSCIQRCDV
SFQTFETLASSTSSVYAMAVSSAGAIAAGGHSLLKSNDEELAERADVYLC
PPVRSFSVFI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR042626THOC6
IPR036322WD40_repeat_dom_sf