Gchil7255.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7255.t1
Unique NameGchil7255.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length358
Homology
BLAST of Gchil7255.t1 vs. uniprot
Match: A0A2V3J6P7_9FLOR (Nuclear nucleic acid-binding protein C1D n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6P7_9FLOR)

HSP 1 Score: 235 bits (599), Expect = 1.630e-71
Identity = 119/151 (78.81%), Postives = 131/151 (86.75%), Query Frame = 0
Query:    1 MERSHEDAQLEYTKFSYALEQLQRTLRPALSAVDSLRSAGNEEDLDPLSRARMHIALAYAVNSLFCMYLRTQGIEPSTHPVAEEIARVQDAFMRMRKVEVGESTDHKPKPDRDRRKHIVNAKKSATRLAALVFPEEEDLLRALQGKPGRLE 151
            MERSH+ AQL  TKFSYA+EQLQR LRP LSA+D LRS+ NEE+LD +SR RMHI+LAYAVNSLFCMYLRTQGI+P+THP+AEEI RVQDAFMRMRKVE GEST HK  P RDRRKHI N+KKSA RLAALVFPEE+DLLRALQGK  R E
Sbjct:    1 MERSHQQAQLALTKFSYAVEQLQRALRPVLSAIDGLRSSSNEEELDAISRTRMHISLAYAVNSLFCMYLRTQGIDPATHPIAEEIVRVQDAFMRMRKVEAGESTSHKQLPKRDRRKHIANSKKSAARLAALVFPEEDDLLRALQGKTRRPE 151          
BLAST of Gchil7255.t1 vs. uniprot
Match: A0A7S1T4K4_9RHOD (Nuclear nucleic acid-binding protein C1D (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T4K4_9RHOD)

HSP 1 Score: 68.9 bits (167), Expect = 7.120e-11
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 0
Query:   15 FSYALEQLQRTLRPALSAVDSLRSAGNEEDLDPLSRARMHIALAYAVNSLFCMYLRTQGIEPSTHPVAEEIARVQDAFMRMRKV 98
            F  A+  +++ L+P L       + G + D   L  A +H+ALAY +NSLF M+LRTQG++ S HPV EEI RV+ A+ ++++V
Sbjct:   12 FENAIRAIEQGLQPVLEEASVGSADGGDVDTR-LREAEVHVALAYTLNSLFYMFLRTQGVDASQHPVREEIDRVKIAYAKLQRV 94          
BLAST of Gchil7255.t1 vs. uniprot
Match: UPI001CFED7CF (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFED7CF)

HSP 1 Score: 67.8 bits (164), Expect = 6.170e-10
Identity = 32/82 (39.02%), Postives = 56/82 (68.29%), Query Frame = 0
Query:   15 FSYALEQLQRTLRPALSAVDSLRSAGNEEDLDPLSRARMHIALAYAVNSLFCMYLRTQGIEPSTHPVAEEIARVQDAFMRMR 96
            F+ +L+Q++  ++P L    + +++     LDP SRA++++  AY VN+LF +YL+TQGI P  HP+ +EIAR+Q  F +++
Sbjct:   18 FNRSLKQVESMVQPLLEQPLTTKTS----KLDPESRAKVNLCCAYTVNTLFYLYLKTQGINPDDHPIKQEIARIQLYFKKLK 95          
BLAST of Gchil7255.t1 vs. uniprot
Match: A0A8J4PQY2_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PQY2_9MYCE)

HSP 1 Score: 66.6 bits (161), Expect = 9.660e-10
Identity = 40/116 (34.48%), Postives = 67/116 (57.76%), Query Frame = 0
Query:    7 DAQLEYTKFSYALEQLQRTLRPALSAVDSLRSAGNEEDLDPLSRARMHIALAYAVNSLFCMYLRTQGIEPSTHPVAEEIARVQDAFMRMRKVEVGESTDHKPKP--DRDRRKHIVN 120
            D Q + T F   L++L+  L P      SL+   ++E L P+  A+++I +AYA+NSLF MYL+TQG+ P  H V  E+ R++   ++++ +     T+ KPK   D D  K +++
Sbjct:    9 DIQQDITNFENILDKLEGQLDPFFKV--SLKE--HQEKLTPVESAKLNITVAYALNSLFFMYLQTQGVSPHDHQVKNELERIKPYILKLKSMT--NKTEEKPKMQIDSDAAKRMID 118          
BLAST of Gchil7255.t1 vs. uniprot
Match: A0A6A5BJN0_NAEFO (Nuclear nucleic acid-binding protein C1D n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BJN0_NAEFO)

HSP 1 Score: 67.4 bits (163), Expect = 1.030e-9
Identity = 32/82 (39.02%), Postives = 56/82 (68.29%), Query Frame = 0
Query:   15 FSYALEQLQRTLRPALSAVDSLRSAGNEEDLDPLSRARMHIALAYAVNSLFCMYLRTQGIEPSTHPVAEEIARVQDAFMRMR 96
            F+ +L+Q++  ++P L    + +++     LDP SRA++++  AY VN+LF +YL+TQGI P  HP+ +EIAR+Q  F +++
Sbjct:   17 FNRSLKQVESLVQPLLEQPLTSKTS----KLDPESRAKVNLCCAYTVNTLFYLYLKTQGINPDDHPIKQEIARIQLYFKKLK 94          
BLAST of Gchil7255.t1 vs. uniprot
Match: A0A7S0WQV9_9CHLO (Nuclear nucleic acid-binding protein C1D (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WQV9_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 3.920e-9
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 0
Query:   15 FSYALEQLQRTLRPALSAVDSLRSAGNEEDLDPLSRARMHIALAYAVNSLFCMYLRTQGIEPSTHPVAEEIARVQDAFMRMRKVEVGEST 104
            F  AL  ++++L+P L A  S R   ++  L PL RA +H+ LA A N+LF MYL+TQG+    HPV  E+ RVQ   M + KVE  ++T
Sbjct:   17 FETALSSIEKSLQPVLGA--SARHLDSQ--LKPLERAELHVTLAAAANTLFRMYLKTQGVPLDAHPVNRELERVQ---MYLDKVERAKNT 99          
BLAST of Gchil7255.t1 vs. uniprot
Match: A0A0L0DEP2_THETB (Nuclear nucleic acid-binding protein C1D n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DEP2_THETB)

HSP 1 Score: 65.5 bits (158), Expect = 4.870e-9
Identity = 33/73 (45.21%), Postives = 54/73 (73.97%), Query Frame = 0
Query:   18 ALEQLQRTLRPALSA-VDSLRSAGNEEDLDPLSRARMHIALAYAVNSLFCMYLRTQGIEPSTHPVAEEIARVQ 89
            AL Q++ T++P L   ++ +      E+LD   +A++++ALAY++NSLF +YL+TQG +PS HPVA+E+ARV+
Sbjct:   17 ALAQVEATMQPLLEKPLEEVM-----ENLDNADKAKLNVALAYSLNSLFHIYLKTQGQDPSAHPVADELARVK 84          
BLAST of Gchil7255.t1 vs. uniprot
Match: A0A7S0IES0_MICPS (Nuclear nucleic acid-binding protein C1D n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0IES0_MICPS)

HSP 1 Score: 65.1 bits (157), Expect = 7.830e-9
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 0
Query:    6 EDAQLEYTKFSYALEQLQRTLRPALSAVDSLRSAGNEEDLDPLSRARMHIALAYAVNSLFCMYLRTQGIEPSTHPVAEEIARV 88
            ED + +  KF  A+++++  L P LSA      A     L+PL RAR+HIALA AV++L+ MY++T G++P+ H ++ E+ RV
Sbjct:   42 EDVKEQLEKFEAAVQEMEDGLTPLLSADRKEMEAA----LNPLERARVHIALANAVSTLYAMYIKTVGMDPADHGISRELERV 120          
BLAST of Gchil7255.t1 vs. uniprot
Match: UPI0001869040 (nuclear nucleic acid-binding protein C1D-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0001869040)

HSP 1 Score: 63.9 bits (154), Expect = 1.030e-8
Identity = 39/132 (29.55%), Postives = 66/132 (50.00%), Query Frame = 0
Query:   15 FSYALEQLQRTLRPALSAVDSLRSAGNEEDLDPLSRARMHIALAYAVNSLFCMYLRTQGIEPSTHPVAEEIARVQDAFMRMRKVEVGESTDHKPKPDRDRRKHIVNAKKSATRLAALVFPEEEDLLRALQGK 146
            FS +L+ ++   +P L       +  + E L+ L +A++H+   YA+NSLF +YL TQGI+P  HP+  E+ R++    R++++E             D+RK     K +A R+      E   +    QGK
Sbjct:   19 FSDSLKSVEEVFKPFLQM-----ALEDVEKLESLDQAKLHLTAVYAINSLFWIYLTTQGIDPKDHPIKNELDRIRSYMNRVKEIE-------------DKRKAAKLDKAAAKRIVKSALWEPSKMPGGSQGK 132          
BLAST of Gchil7255.t1 vs. uniprot
Match: A0A6I9XV36_9SAUR (Nuclear nucleic acid-binding protein C1D n=8 Tax=Colubroidea TaxID=34989 RepID=A0A6I9XV36_9SAUR)

HSP 1 Score: 63.9 bits (154), Expect = 1.340e-8
Identity = 33/99 (33.33%), Postives = 56/99 (56.57%), Query Frame = 0
Query:    1 MERSHEDAQLEYTKFSYALEQLQRTLRPALSAVDSLRSAGNEEDLDPLSRARMHIALAYAVNSLFCMYLRTQGIEPSTHPVAEEIARVQDAFMRMRKVE 99
            M+ S ED   E   +  A E    ++   L  + S+  +   + LDPL +A++ +  AY +NS+F +YL TQGI P  HPV +E+ R++    ++R++E
Sbjct:   24 MDPSKEDYPTEIHDYLVAFETAVGSVDAVLKTMMSISRSELLQKLDPLEQAKVDLVSAYTLNSMFWVYLATQGINPKEHPVKQELERIRTYMNKVREIE 122          
The following BLAST results are available for this feature:
BLAST of Gchil7255.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6P7_9FLOR1.630e-7178.81Nuclear nucleic acid-binding protein C1D n=1 Tax=G... [more]
A0A7S1T4K4_9RHOD7.120e-1141.67Nuclear nucleic acid-binding protein C1D (Fragment... [more]
UPI001CFED7CF6.170e-1039.02uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A8J4PQY2_9MYCE9.660e-1034.48Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A6A5BJN0_NAEFO1.030e-939.02Nuclear nucleic acid-binding protein C1D n=1 Tax=N... [more]
A0A7S0WQV9_9CHLO3.920e-943.33Nuclear nucleic acid-binding protein C1D (Fragment... [more]
A0A0L0DEP2_THETB4.870e-945.21Nuclear nucleic acid-binding protein C1D n=1 Tax=T... [more]
A0A7S0IES0_MICPS7.830e-940.96Nuclear nucleic acid-binding protein C1D n=2 Tax=M... [more]
UPI00018690401.030e-829.55nuclear nucleic acid-binding protein C1D-like n=1 ... [more]
A0A6I9XV36_9SAUR1.340e-833.33Nuclear nucleic acid-binding protein C1D n=8 Tax=C... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 291..312
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 268..293
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 307..324
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 210..252
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..202
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..176
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..357
NoneNo IPR availablePANTHERPTHR15341:SF3NUCLEAR NUCLEIC ACID-BINDING PROTEIN C1Dcoord: 13..342
IPR007146Sas10/Utp3/C1DPFAMPF04000Sas10_Utp3coord: 17..92
e-value: 2.1E-11
score: 44.3
IPR011082Exosome-associated factor Rrp47/DNA strand repair C1DPANTHERPTHR15341SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSORcoord: 13..342

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:876912..877985 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7255.t1Gchil7255.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004441_pilon 876912..877985 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7255.t1 ID=Gchil7255.t1|Name=Gchil7255.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=358bp
MERSHEDAQLEYTKFSYALEQLQRTLRPALSAVDSLRSAGNEEDLDPLSR
ARMHIALAYAVNSLFCMYLRTQGIEPSTHPVAEEIARVQDAFMRMRKVEV
GESTDHKPKPDRDRRKHIVNAKKSATRLAALVFPEEEDLLRALQGKPGRL
ESKREGKITGSEIEKNPAHAKDSKTKTPTQSENVNFKIAENERQKQVNEA
TEFGGDDEVETESAIQKEIDEVRKDDPDDKVETRSGIKEEGKVNEVMKYD
SDAEFKTGSGIQVEVGEVVDPGKDKQDRKSTLPTPEERTTKKKSKKDRKE
KEQKKKKEKRKDRPSGEEKESHQKGRTKSKKRKSKSDISSSDKREKKRKK
RDKQKTL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007146Sas10/Utp3/C1D
IPR011082Exosome-assoc_fac/DNA_repair