Gchil7102.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7102.t1
Unique NameGchil7102.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length346
Homology
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BLAST of Gchil7102.t1 vs. uniprot
Match: A0A2V3IXJ5_9FLOR (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXJ5_9FLOR)

HSP 1 Score: 281 bits (719), Expect = 1.090e-89
Identity = 155/339 (45.72%), Postives = 210/339 (61.95%), Query Frame = 0 
Query:    4 RLGHVFWALLFLIMFAVALAVNLIRFPSYEQVECKKRGRNSFSRIPLAGSDPKEFCILKVNVTVTRESSQFDTEASTKPTTCKQPE-LDVRRCWLSESNKYFIPIDREDAQEYKQASRVFHRLRVAFIAFAGVFALFFIYVVIRSFDSRLFNCCCP-TFSRNDTNNMHDNDPYLRPPSSNFS-ATTLNDIAFPNSALQYRISLFIRQHSMIPDQIKKIADEQWTCCICLEQIPDVQRLPHIVRLRCSHAIHAECFRMWVSKGRAVCCICNSPVFSDSQIDDNDSYAPSSPSMVGSRPPGSLIVEITEYSPSSPATSDVVQASQPQADSNAIQRNSAQHD 339
            R  HV  ++++L+M A+AL+VN    PSY+  EC++ G     +           C  +VNVTVT+++ +F+ EA T+ + C   + + V  CWLS SN  FIPID  DA+ Y+  +R F+RLRVAFI FA  F LFF Y V+R  +  +F  C P T S  +   +   +   R PSSNFS A+   +IAFP S  Q RIS  I +  M P+QIK +A++QWTCCICLEQI +   +  + RLRC+H+IHAEC + W+ KGRA CCICN+ VFS+   D N+S A S PS++  RP GS  +EITEY+PSSPATS V Q SQ Q+D+     N  + D
Sbjct:    4 RWRHVCGSIIWLVMLAIALSVNFKAIPSYQIAECEQTGDQLVDK-------GNTGCTWRVNVTVTKDNEKFEKEARTRKSNCDGDKVITVGECWLSRSNDVFIPIDSRDAKHYESGARTFNRLRVAFIVFAIFFGLFFSYAVVRMIEPNIFRLCRPSTSSVRNNGRLRSENVSPRRPSSNFSTASPRQEIAFPTSVYQQRISSLIERSLMSPEQIKALAEQQWTCCICLEQIEEGPSISAVARLRCNHSIHAECLKTWLGKGRAACCICNAEVFSEPFTDWNESVAHSLPSVLEGRPTGSFAIEITEYTPSSPATSIVAQFSQAQSDTTQANDNITEGD 335
The following BLAST results are available for this feature:
BLAST of Gchil7102.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IXJ5_9FLOR1.090e-8945.72RING-type domain-containing protein n=1 Tax=Gracil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 199..281
e-value: 3.5E-10
score: 41.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 308..338
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 125..145
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 30..124
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..29
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 146..345
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 216..277
NoneNo IPR availableTMHMMTMhelixcoord: 125..144
NoneNo IPR availableTMHMMTMhelixcoord: 10..32
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 225..270
score: 9.774726

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:136528..137565 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7102.t1Gchil7102.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004441_pilon 136528..137565 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7102.t1 ID=Gchil7102.t1|Name=Gchil7102.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=346bp
MALRLGHVFWALLFLIMFAVALAVNLIRFPSYEQVECKKRGRNSFSRIPL
AGSDPKEFCILKVNVTVTRESSQFDTEASTKPTTCKQPELDVRRCWLSES
NKYFIPIDREDAQEYKQASRVFHRLRVAFIAFAGVFALFFIYVVIRSFDS
RLFNCCCPTFSRNDTNNMHDNDPYLRPPSSNFSATTLNDIAFPNSALQYR
ISLFIRQHSMIPDQIKKIADEQWTCCICLEQIPDVQRLPHIVRLRCSHAI
HAECFRMWVSKGRAVCCICNSPVFSDSQIDDNDSYAPSSPSMVGSRPPGS
LIVEITEYSPSSPATSDVVQASQPQADSNAIQRNSAQHDNSFVIV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING