Gchil7088.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7088.t1
Unique NameGchil7088.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length225
Homology
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BLAST of Gchil7088.t1 vs. uniprot
Match: R7QR64_CHOCR (USP domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QR64_CHOCR)

HSP 1 Score: 168 bits (426), Expect = 2.120e-44
Identity = 86/160 (53.75%), Postives = 108/160 (67.50%), Query Frame = 0 
Query:   43 WYEQSCTQ----VDSHNDPVGTFDSLPHKELIWVATASGMLHAHHVLVMARTVSTFIAEPTFDPSNHGDVRHILVSDSFVLTALGYVSAVLQHGGVLSSSMRCETIKYAKSIALNPVSDSYMCTGGESRMLVVIHIQQQRIMRQATLRGAPGVTAAVWTA 198
            WYE SC +    V   ND +      P KELIW  TA GMLH+H    M R VS+++AEP+ DPS   DVR I+VS   VL A+GY  AVL  GG   ++MR +TIK A+ +ALNP S+S++C GGESRML +I +QQ+RI+RQATLRGA GVT A+W A
Sbjct:   42 WYEVSCVEAGAGVPGRNDAIRALAFDPVKELIWAGTAGGMLHSHFASDMTRVVSSYVAEPSADPSITDDVRDIVVSSHSVLAAMGYGLAVLTRGGAFLAAMRADTIKNARGLALNPHSESHVCIGGESRMLAIIDLQQERILRQATLRGATGVTKALWGA 201
The following BLAST results are available for this feature:
BLAST of Gchil7088.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7QR64_CHOCR2.120e-4453.75USP domain-containing protein n=1 Tax=Chondrus cri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 39..207
e-value: 4.8E-11
score: 44.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..31

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000131_piloncontigtig00000131_pilon:563642..564316 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7088.t1Gchil7088.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000131_pilon 563642..564316 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7088.t1 ID=Gchil7088.t1|Name=Gchil7088.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=225bp
MNSHFMSSGAPVGDEEHLPSSHTEAGHYNKHDENLEDMLPQCWYEQSCTQ
VDSHNDPVGTFDSLPHKELIWVATASGMLHAHHVLVMARTVSTFIAEPTF
DPSNHGDVRHILVSDSFVLTALGYVSAVLQHGGVLSSSMRCETIKYAKSI
ALNPVSDSYMCTGGESRMLVVIHIQQQRIMRQATLRGAPGVTAAVWTAPH
HYGDASVQARATYPASDPAKSAAA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf